Merge pull request #14 from ReproNim/fix-navigation

Fix navigation

content/_index.md

@@ -15,9 +15,8 @@ To deliver effective tools, training and principles to the neuroimaging communit
 
 
 {{< cards cols="3" >}}
-{{< card link="/getting-started/index.html" title="Getting Started" image="/images/tmp.png" subtitle="Getting Started with ReproNim" >}}
-{{< card link="/guide/index.html" title="Guide" image="/images/tmp.png" subtitle="ReproNim Guide" >}}
-{{< card link="/fellowship/index.html" title="Fellowship" image="/images/tmp.png" subtitle="ReproNim Fellowship Program" >}}
-{{< card link="/community/index.html" title="Community" image="/images/tmp.png" subtitle="Community Spotlight and News" >}}
-{{< card link="/why-reproducible-neuroimaging/index.html" title="Why" image="/images/tmp.png" subtitle="Why Reproducible Neuroimaging" >}}
+{{< card link="/docs/getting-started/" title="Getting Started" image="/images/tmp.png" subtitle="Getting Started with ReproNim" >}}
+{{< card link="/docs/tutorials/" title="Tutorials" image="/images/tmp.png" subtitle="ReproNim Guide" >}}
+{{< card link="/fellowship/" title="Fellowship" image="/images/tmp.png" subtitle="ReproNim Fellowship Program" >}}
+{{< card link="/about/why/" title="Why" image="/images/tmp.png" subtitle="Why Reproducible Neuroimaging" >}}
 {{< /cards >}}

content/about/_index.md

@@ -1,6 +1,6 @@
 ---
 title: About
-type: about
+type: docs
 ---
 
 - We are a National Center funded through the NIH

content/about/eab.md

@@ -1,5 +1,6 @@
 ---
 title: "External Advisory Board"
+type: docs
 date: 2024-10-25T14:55:28-04:00
 ---
 

content/why-reproducible-neuroimaging/_index.md → content/about/why.md

@@ -1,5 +1,6 @@
 ---
 title: "Why Reproducible Neuroimaging"
+type: docs
 date: 2024-10-25T14:41:08-04:00
 ---
 

content/community/_index.md

@@ -4,11 +4,20 @@ date: 2024-10-25T14:39:59-04:00
 draft: false
 ---
 
-- News stories
-    - From ReproNim users/fellows
-    - On Reproducibility in general
-- Papers published using ReproNim and statistics
-    - ReproNim by the numbers???
+#### Contact us
+
 - [The ReproNim Blog](https://repronim.wordpress.com/)
-- Webinars/office hours
 - Sign up for our mailing list
+- How to report site errors
+- Link to Training under Resources
+- Become a collaborator
+- Let us help you → service project
+- Become a fellow
+- Your materials here → Contribute training, news, highlights
+- Join our webinar series
+- Sign up for our mailing list
+
+#### Calendar
+
+- Webinars/office hours
+- Fellows application deadlines

content/community/news.md

@@ -0,0 +1,9 @@
+---
+title: "News"
+---
+
+## Stub 
+
+- From ReproNim users/fellows
+- On Reproducibility in general
+- Papers published using ReproNim and statistics

content/community/publications.md

@@ -0,0 +1,5 @@
+---
+title: "Publications"
+---
+- Papers published using ReproNim and statistics
+    - ReproNim by the numbers???

content/guide/_index.md → content/docs/_index.md

@@ -1,10 +1,8 @@
 ---
-title: ReproNim Guide
-type: resources
+title: Documentation
+type: docs
 ---
 
-## The ReproNim Guide/The ReproNim Handbook
-
 ### ReproNim Core Toolset (tools featured in use case for now)
 
 [Tool directory](tools/index.html)
@@ -26,3 +24,12 @@ Here we list test products, scripts, other things that might be useful, but at t
 - How do I convert from DICOM to BIDS
 - How do I create a data dictionary?
 - How to configure SPM/Freesurfer to …
+
+### Training Materials
+- ReproNim training materials
+
+
+### MISC
+- Sample NIH Data Management and Sharing Plan for neuroimaging
+- ReproNim User Personas
+- FAQs

content/docs/getting-started/estimating-cost.md

@@ -0,0 +1,15 @@
+---
+title: Estimating Cost
+linkTitle: Estimating Cost
+type: docs
+weight: 3
+---
+
+## How much will it cost?
+
+1. Direct Resource Cost: Are the infrastructure requirements currently met? (Cloud Infrastructure and Physical Hardware)
+1. What tools and standards need to be adopted?
+1. Do any lab members/collaborators already have experience with the new tools and standards?
+1. How comfortable are the collaborators with technical fundamentals like the command line?
+
+

content/getting-started/implementation.md → content/docs/getting-started/implementation.md

@@ -1,5 +1,5 @@
 ---
-title: Basic implementations
+title: Implementation
 linkTitle: Implementations
 type: docs
 weight: 5

content/getting-started/basics.md → content/docs/getting-started/principals.md

@@ -1,12 +1,10 @@
 ---
-title: The Basics of Reproducible Neuroimaging
-linkTitle: Basics
+title: Principals of Reproducible Neuroimaging
+linkTitle: Principals
 type: docs
 weight: 1
 ---
 
-## ReproNim Best Practices
-
 1. Proper planning:
     1. See:  Reproducible Results
     1. Good science basics, how many subjects etc
@@ -23,12 +21,5 @@ weight: 1
     1. Use containers where reasonable
 1. Re-executable publications
 
-## How much will it cost?
-
-1. Direct Resource Cost: Are the infrastructure requirements currently met? (Cloud Infrastructure and Physical Hardware)
-1. What tools and standards need to be adopted?
-1. Do any lab members/collaborators already have experience with the new tools and standards?
-1. How comfortable are the collaborators with technical fundamentals like the command line?
-
 ## Basic Implementations
 

content/guide/tools/_index.md → content/docs/tools/_index.md

@@ -1,6 +1,7 @@
 ---
 title: "Tools"
 date: 2024-10-28T15:14:39-04:00
+weight: 10
 ---
 
 ## ReproNim Core Tools

content/docs/tutorials/_index.md

@@ -0,0 +1,13 @@
+---
+title: Tutorials
+type: docs
+weight: 5 
+---
+
+### How to… 
+
+- How do I convert from DICOM to BIDS
+- How do I create a data dictionary?
+- How to configure SPM/Freesurfer to …
+
+

hugo.yaml

@@ -22,17 +22,17 @@ menu:
     #   pageRef: /docs
     #   weight: 1
     - name: About
-      pageRef: /about/index.html
+      pageRef: /about/
       weight: 2
-    - name: Resources
-      pageRef: /resources/index.html
+    - name: Documentation
+      pageRef: /docs/
       weight: 3
-    - name: Participate
-      pageRef: /participate/index.html
+    - name: Fellowship
+      pageRef: /fellowship/
+      weight: 5
+    - name: Community
+      pageRef: /community/
       weight: 7
-    - name: Help
-      pageRef: /help/index.html
-      weight: 15
     # - name: Contact ↗
     #   url: "https://github.com/imfing"
     #   weight: 15
@@ -47,10 +47,10 @@ params:
     displayLogo: true
     logo:
       path: images/logo-square-256.png
-      width: 50 
+      width: 50
 
   footer:
-    displayCopyright: false
+    displayCopyright: true
     displayPoweredBy: true
 
   editURL:

i18n/en.yaml

@@ -0,0 +1,14 @@
+# backToTop: "Scroll to top"
+# changeLanguage: "Change language"
+# changeTheme: "Change theme"
+# copyCode: "Copy code"
+copyright: "© 2024 ReproNIM Project"
+# dark: "Dark"
+# editThisPage: "Edit this page on GitHub →"
+# lastUpdated: "Last updated on"
+# light: "Light"
+# noResultsFound: "No results found."
+# onThisPage: "On this page"
+poweredBy: <a href="https://www.netlify.com"> <img src="https://www.netlify.com/v3/img/components/netlify-light.svg" alt="Deploys by Netlify" /> </a>
+# readMore: "Read more →"
+# searchPlaceholder: "Search..."