diff --git a/content/_index.md b/content/_index.md index f7b4cda..fbc0455 100644 --- a/content/_index.md +++ b/content/_index.md @@ -15,9 +15,8 @@ To deliver effective tools, training and principles to the neuroimaging communit {{< cards cols="3" >}} -{{< card link="/getting-started/index.html" title="Getting Started" image="/images/tmp.png" subtitle="Getting Started with ReproNim" >}} -{{< card link="/guide/index.html" title="Guide" image="/images/tmp.png" subtitle="ReproNim Guide" >}} -{{< card link="/fellowship/index.html" title="Fellowship" image="/images/tmp.png" subtitle="ReproNim Fellowship Program" >}} -{{< card link="/community/index.html" title="Community" image="/images/tmp.png" subtitle="Community Spotlight and News" >}} -{{< card link="/why-reproducible-neuroimaging/index.html" title="Why" image="/images/tmp.png" subtitle="Why Reproducible Neuroimaging" >}} +{{< card link="/docs/getting-started/" title="Getting Started" image="/images/tmp.png" subtitle="Getting Started with ReproNim" >}} +{{< card link="/docs/tutorials/" title="Tutorials" image="/images/tmp.png" subtitle="ReproNim Guide" >}} +{{< card link="/fellowship/" title="Fellowship" image="/images/tmp.png" subtitle="ReproNim Fellowship Program" >}} +{{< card link="/about/why/" title="Why" image="/images/tmp.png" subtitle="Why Reproducible Neuroimaging" >}} {{< /cards >}} diff --git a/content/about/_index.md b/content/about/_index.md index 08a0491..e3c72dd 100644 --- a/content/about/_index.md +++ b/content/about/_index.md @@ -1,6 +1,6 @@ --- title: About -type: about +type: docs --- - We are a National Center funded through the NIH diff --git a/content/about/eab.md b/content/about/eab.md index 4b37400..1290585 100644 --- a/content/about/eab.md +++ b/content/about/eab.md @@ -1,5 +1,6 @@ --- title: "External Advisory Board" +type: docs date: 2024-10-25T14:55:28-04:00 --- diff --git a/content/why-reproducible-neuroimaging/_index.md b/content/about/why.md similarity index 99% rename from content/why-reproducible-neuroimaging/_index.md rename to content/about/why.md index 2ce0548..9d4f66d 100644 --- a/content/why-reproducible-neuroimaging/_index.md +++ b/content/about/why.md @@ -1,5 +1,6 @@ --- title: "Why Reproducible Neuroimaging" +type: docs date: 2024-10-25T14:41:08-04:00 --- diff --git a/content/community/_index.md b/content/community/_index.md index 241bf38..3babf87 100644 --- a/content/community/_index.md +++ b/content/community/_index.md @@ -4,11 +4,20 @@ date: 2024-10-25T14:39:59-04:00 draft: false --- -- News stories - - From ReproNim users/fellows - - On Reproducibility in general -- Papers published using ReproNim and statistics - - ReproNim by the numbers??? +#### Contact us + - [The ReproNim Blog](https://repronim.wordpress.com/) -- Webinars/office hours - Sign up for our mailing list +- How to report site errors +- Link to Training under Resources +- Become a collaborator +- Let us help you → service project +- Become a fellow +- Your materials here → Contribute training, news, highlights +- Join our webinar series +- Sign up for our mailing list + +#### Calendar + +- Webinars/office hours +- Fellows application deadlines diff --git a/content/community/news.md b/content/community/news.md new file mode 100644 index 0000000..3e1e345 --- /dev/null +++ b/content/community/news.md @@ -0,0 +1,9 @@ +--- +title: "News" +--- + +## Stub + +- From ReproNim users/fellows +- On Reproducibility in general +- Papers published using ReproNim and statistics diff --git a/content/community/publications.md b/content/community/publications.md new file mode 100644 index 0000000..488f201 --- /dev/null +++ b/content/community/publications.md @@ -0,0 +1,5 @@ +--- +title: "Publications" +--- +- Papers published using ReproNim and statistics + - ReproNim by the numbers??? diff --git a/content/guide/_index.md b/content/docs/_index.md similarity index 74% rename from content/guide/_index.md rename to content/docs/_index.md index 74d73c9..4801e09 100644 --- a/content/guide/_index.md +++ b/content/docs/_index.md @@ -1,10 +1,8 @@ --- -title: ReproNim Guide -type: resources +title: Documentation +type: docs --- -## The ReproNim Guide/The ReproNim Handbook - ### ReproNim Core Toolset (tools featured in use case for now) [Tool directory](tools/index.html) @@ -26,3 +24,12 @@ Here we list test products, scripts, other things that might be useful, but at t - How do I convert from DICOM to BIDS - How do I create a data dictionary? - How to configure SPM/Freesurfer to … + +### Training Materials +- ReproNim training materials + + +### MISC +- Sample NIH Data Management and Sharing Plan for neuroimaging +- ReproNim User Personas +- FAQs diff --git a/content/getting-started/ecosystem.md b/content/docs/ecosystem.md similarity index 100% rename from content/getting-started/ecosystem.md rename to content/docs/ecosystem.md diff --git a/content/getting-started/_index.md b/content/docs/getting-started/_index.md similarity index 100% rename from content/getting-started/_index.md rename to content/docs/getting-started/_index.md diff --git a/content/docs/getting-started/estimating-cost.md b/content/docs/getting-started/estimating-cost.md new file mode 100644 index 0000000..cce7a8e --- /dev/null +++ b/content/docs/getting-started/estimating-cost.md @@ -0,0 +1,15 @@ +--- +title: Estimating Cost +linkTitle: Estimating Cost +type: docs +weight: 3 +--- + +## How much will it cost? + +1. Direct Resource Cost: Are the infrastructure requirements currently met? (Cloud Infrastructure and Physical Hardware) +1. What tools and standards need to be adopted? +1. Do any lab members/collaborators already have experience with the new tools and standards? +1. How comfortable are the collaborators with technical fundamentals like the command line? + + diff --git a/content/getting-started/implementation.md b/content/docs/getting-started/implementation.md similarity index 92% rename from content/getting-started/implementation.md rename to content/docs/getting-started/implementation.md index dc7f66c..bb9c23f 100644 --- a/content/getting-started/implementation.md +++ b/content/docs/getting-started/implementation.md @@ -1,5 +1,5 @@ --- -title: Basic implementations +title: Implementation linkTitle: Implementations type: docs weight: 5 diff --git a/content/getting-started/basics.md b/content/docs/getting-started/principals.md similarity index 60% rename from content/getting-started/basics.md rename to content/docs/getting-started/principals.md index 7fc682c..065c41a 100644 --- a/content/getting-started/basics.md +++ b/content/docs/getting-started/principals.md @@ -1,12 +1,10 @@ --- -title: The Basics of Reproducible Neuroimaging -linkTitle: Basics +title: Principals of Reproducible Neuroimaging +linkTitle: Principals type: docs weight: 1 --- -## ReproNim Best Practices - 1. Proper planning: 1. See: Reproducible Results 1. Good science basics, how many subjects etc @@ -23,12 +21,5 @@ weight: 1 1. Use containers where reasonable 1. Re-executable publications -## How much will it cost? - -1. Direct Resource Cost: Are the infrastructure requirements currently met? (Cloud Infrastructure and Physical Hardware) -1. What tools and standards need to be adopted? -1. Do any lab members/collaborators already have experience with the new tools and standards? -1. How comfortable are the collaborators with technical fundamentals like the command line? - ## Basic Implementations diff --git a/content/guide/tools/_index.md b/content/docs/tools/_index.md similarity index 96% rename from content/guide/tools/_index.md rename to content/docs/tools/_index.md index 039e709..a3fd7f6 100644 --- a/content/guide/tools/_index.md +++ b/content/docs/tools/_index.md @@ -1,6 +1,7 @@ --- title: "Tools" date: 2024-10-28T15:14:39-04:00 +weight: 10 --- ## ReproNim Core Tools diff --git a/content/guide/tools/bids/_index.md b/content/docs/tools/bids/_index.md similarity index 100% rename from content/guide/tools/bids/_index.md rename to content/docs/tools/bids/_index.md diff --git a/content/guide/tools/datalad/_index.md b/content/docs/tools/datalad/_index.md similarity index 100% rename from content/guide/tools/datalad/_index.md rename to content/docs/tools/datalad/_index.md diff --git a/content/guide/tools/neurobagel/_index.md b/content/docs/tools/neurobagel/_index.md similarity index 100% rename from content/guide/tools/neurobagel/_index.md rename to content/docs/tools/neurobagel/_index.md diff --git a/content/guide/tools/neurodocker/_index.md b/content/docs/tools/neurodocker/_index.md similarity index 100% rename from content/guide/tools/neurodocker/_index.md rename to content/docs/tools/neurodocker/_index.md diff --git a/content/guide/tools/nidm/_index.md b/content/docs/tools/nidm/_index.md similarity index 100% rename from content/guide/tools/nidm/_index.md rename to content/docs/tools/nidm/_index.md diff --git a/content/guide/tools/reproin/_index.md b/content/docs/tools/reproin/_index.md similarity index 100% rename from content/guide/tools/reproin/_index.md rename to content/docs/tools/reproin/_index.md diff --git a/content/guide/tools/reproschema/_index.md b/content/docs/tools/reproschema/_index.md similarity index 100% rename from content/guide/tools/reproschema/_index.md rename to content/docs/tools/reproschema/_index.md diff --git a/content/docs/tutorials/_index.md b/content/docs/tutorials/_index.md new file mode 100644 index 0000000..5271d12 --- /dev/null +++ b/content/docs/tutorials/_index.md @@ -0,0 +1,13 @@ +--- +title: Tutorials +type: docs +weight: 5 +--- + +### How to… + +- How do I convert from DICOM to BIDS +- How do I create a data dictionary? +- How to configure SPM/Freesurfer to … + + diff --git a/content/help/_index.md b/content/help/_index.md deleted file mode 100644 index 2f47b30..0000000 --- a/content/help/_index.md +++ /dev/null @@ -1,8 +0,0 @@ ---- -title: Help ---- - -- Contact us -- Site map/search -- How to report site errors -- Link to Training under Resources diff --git a/content/participate/_index.md b/content/participate/_index.md deleted file mode 100644 index 0cfd212..0000000 --- a/content/participate/_index.md +++ /dev/null @@ -1,11 +0,0 @@ ---- -title: Participate -type: participate ---- - -- Become a collaborator -- Let us help you → service project -- Become a fellow -- Your materials here → Contribute training, news, highlights -- Join our webinar series -- Sign up for our mailing list diff --git a/content/resources/_index.md b/content/resources/_index.md deleted file mode 100644 index a26b84a..0000000 --- a/content/resources/_index.md +++ /dev/null @@ -1,12 +0,0 @@ ---- -title: Resources -type: resources ---- - -- ReproNim training materials -- Sample NIH Data Management and Sharing Plan for neuroimaging -- ReproNim Guide - - Tools - - How to… -- ReproNim User Personas -- FAQs diff --git a/hugo.yaml b/hugo.yaml index 292d7cb..5f4118f 100644 --- a/hugo.yaml +++ b/hugo.yaml @@ -22,17 +22,17 @@ menu: # pageRef: /docs # weight: 1 - name: About - pageRef: /about/index.html + pageRef: /about/ weight: 2 - - name: Resources - pageRef: /resources/index.html + - name: Documentation + pageRef: /docs/ weight: 3 - - name: Participate - pageRef: /participate/index.html + - name: Fellowship + pageRef: /fellowship/ + weight: 5 + - name: Community + pageRef: /community/ weight: 7 - - name: Help - pageRef: /help/index.html - weight: 15 # - name: Contact ↗ # url: "https://github.com/imfing" # weight: 15 @@ -47,10 +47,10 @@ params: displayLogo: true logo: path: images/logo-square-256.png - width: 50 + width: 50 footer: - displayCopyright: false + displayCopyright: true displayPoweredBy: true editURL: diff --git a/i18n/en.yaml b/i18n/en.yaml new file mode 100644 index 0000000..dfb723c --- /dev/null +++ b/i18n/en.yaml @@ -0,0 +1,14 @@ +# backToTop: "Scroll to top" +# changeLanguage: "Change language" +# changeTheme: "Change theme" +# copyCode: "Copy code" +copyright: "© 2024 ReproNIM Project" +# dark: "Dark" +# editThisPage: "Edit this page on GitHub →" +# lastUpdated: "Last updated on" +# light: "Light" +# noResultsFound: "No results found." +# onThisPage: "On this page" +poweredBy: Deploys by Netlify +# readMore: "Read more →" +# searchPlaceholder: "Search..."