Merge pull request #20 from ReproNim/revert-14-fix-navigation

Revert "Fix navigation"

content/_index.md

@@ -15,8 +15,9 @@ To deliver effective tools, training and principles to the neuroimaging communit
 
 
 {{< cards cols="3" >}}
-{{< card link="/docs/getting-started/" title="Getting Started" image="/images/tmp.png" subtitle="Getting Started with ReproNim" >}}
-{{< card link="/docs/tutorials/" title="Tutorials" image="/images/tmp.png" subtitle="ReproNim Guide" >}}
-{{< card link="/fellowship/" title="Fellowship" image="/images/tmp.png" subtitle="ReproNim Fellowship Program" >}}
-{{< card link="/about/why/" title="Why" image="/images/tmp.png" subtitle="Why Reproducible Neuroimaging" >}}
+{{< card link="/getting-started/index.html" title="Getting Started" image="/images/tmp.png" subtitle="Getting Started with ReproNim" >}}
+{{< card link="/guide/index.html" title="Guide" image="/images/tmp.png" subtitle="ReproNim Guide" >}}
+{{< card link="/fellowship/index.html" title="Fellowship" image="/images/tmp.png" subtitle="ReproNim Fellowship Program" >}}
+{{< card link="/community/index.html" title="Community" image="/images/tmp.png" subtitle="Community Spotlight and News" >}}
+{{< card link="/why-reproducible-neuroimaging/index.html" title="Why" image="/images/tmp.png" subtitle="Why Reproducible Neuroimaging" >}}
 {{< /cards >}}

content/about/_index.md

@@ -1,6 +1,6 @@
 ---
 title: About
-type: docs
+type: about
 ---
 
 - We are a National Center funded through the NIH

content/about/eab.md

@@ -1,6 +1,5 @@
 ---
 title: "External Advisory Board"
-type: docs
 date: 2024-10-25T14:55:28-04:00
 ---
 

content/community/_index.md

@@ -4,20 +4,11 @@ date: 2024-10-25T14:39:59-04:00
 draft: false
 ---
 
-#### Contact us
-
+- News stories
+    - From ReproNim users/fellows
+    - On Reproducibility in general
+- Papers published using ReproNim and statistics
+    - ReproNim by the numbers???
 - [The ReproNim Blog](https://repronim.wordpress.com/)
-- Sign up for our mailing list
-- How to report site errors
-- Link to Training under Resources
-- Become a collaborator
-- Let us help you → service project
-- Become a fellow
-- Your materials here → Contribute training, news, highlights
-- Join our webinar series
-- Sign up for our mailing list
-
-#### Calendar
-
 - Webinars/office hours
-- Fellows application deadlines
+- Sign up for our mailing list

content/docs/getting-started/principals.md → content/getting-started/basics.md

@@ -1,10 +1,12 @@
 ---
-title: Principals of Reproducible Neuroimaging
-linkTitle: Principals
+title: The Basics of Reproducible Neuroimaging
+linkTitle: Basics
 type: docs
 weight: 1
 ---
 
+## ReproNim Best Practices
+
 1. Proper planning:
     1. See:  Reproducible Results
     1. Good science basics, how many subjects etc
@@ -21,5 +23,12 @@ weight: 1
     1. Use containers where reasonable
 1. Re-executable publications
 
+## How much will it cost?
+
+1. Direct Resource Cost: Are the infrastructure requirements currently met? (Cloud Infrastructure and Physical Hardware)
+1. What tools and standards need to be adopted?
+1. Do any lab members/collaborators already have experience with the new tools and standards?
+1. How comfortable are the collaborators with technical fundamentals like the command line?
+
 ## Basic Implementations
 

content/docs/getting-started/implementation.md → content/getting-started/implementation.md

@@ -1,5 +1,5 @@
 ---
-title: Implementation
+title: Basic implementations
 linkTitle: Implementations
 type: docs
 weight: 5

content/docs/_index.md → content/guide/_index.md

@@ -1,8 +1,10 @@
 ---
-title: Documentation
-type: docs
+title: ReproNim Guide
+type: resources
 ---
 
+## The ReproNim Guide/The ReproNim Handbook
+
 ### ReproNim Core Toolset (tools featured in use case for now)
 
 [Tool directory](tools/index.html)
@@ -24,12 +26,3 @@ Here we list test products, scripts, other things that might be useful, but at t
 - How do I convert from DICOM to BIDS
 - How do I create a data dictionary?
 - How to configure SPM/Freesurfer to …
-
-### Training Materials
-- ReproNim training materials
-
-
-### MISC
-- Sample NIH Data Management and Sharing Plan for neuroimaging
-- ReproNim User Personas
-- FAQs

content/docs/tools/_index.md → content/guide/tools/_index.md

@@ -1,7 +1,6 @@
 ---
 title: "Tools"
 date: 2024-10-28T15:14:39-04:00
-weight: 10
 ---
 
 ## ReproNim Core Tools

content/help/_index.md

@@ -0,0 +1,8 @@
+---
+title: Help
+---
+
+- Contact us
+- Site map/search
+- How to report site errors
+- Link to Training under Resources

content/participate/_index.md

@@ -0,0 +1,11 @@
+---
+title: Participate
+type: participate
+---
+
+- Become a collaborator
+- Let us help you → service project
+- Become a fellow
+- Your materials here → Contribute training, news, highlights
+- Join our webinar series
+- Sign up for our mailing list

content/resources/_index.md

@@ -0,0 +1,12 @@
+---
+title: Resources
+type: resources
+---
+
+- ReproNim training materials
+- Sample NIH Data Management and Sharing Plan for neuroimaging
+- ReproNim Guide
+	- Tools
+	- How to…
+- ReproNim User Personas
+- FAQs

content/about/why.md → content/why-reproducible-neuroimaging/_index.md

@@ -1,6 +1,5 @@
 ---
 title: "Why Reproducible Neuroimaging"
-type: docs
 date: 2024-10-25T14:41:08-04:00
 ---
 

hugo.yaml

@@ -22,17 +22,17 @@ menu:
     #   pageRef: /docs
     #   weight: 1
     - name: About
-      pageRef: /about/
+      pageRef: /about/index.html
       weight: 2
-    - name: Documentation
-      pageRef: /docs/
+    - name: Resources
+      pageRef: /resources/index.html
       weight: 3
-    - name: Fellowship
-      pageRef: /fellowship/
-      weight: 5
-    - name: Community
-      pageRef: /community/
+    - name: Participate
+      pageRef: /participate/index.html
       weight: 7
+    - name: Help
+      pageRef: /help/index.html
+      weight: 15
     # - name: Contact ↗
     #   url: "https://github.com/imfing"
     #   weight: 15
@@ -47,10 +47,10 @@ params:
     displayLogo: true
     logo:
       path: images/logo-square-256.png
-      width: 50
+      width: 50 
 
   footer:
-    displayCopyright: true
+    displayCopyright: false
     displayPoweredBy: true
 
   editURL: