diff --git a/content/_index.md b/content/_index.md index fbc0455..f7b4cda 100644 --- a/content/_index.md +++ b/content/_index.md @@ -15,8 +15,9 @@ To deliver effective tools, training and principles to the neuroimaging communit {{< cards cols="3" >}} -{{< card link="/docs/getting-started/" title="Getting Started" image="/images/tmp.png" subtitle="Getting Started with ReproNim" >}} -{{< card link="/docs/tutorials/" title="Tutorials" image="/images/tmp.png" subtitle="ReproNim Guide" >}} -{{< card link="/fellowship/" title="Fellowship" image="/images/tmp.png" subtitle="ReproNim Fellowship Program" >}} -{{< card link="/about/why/" title="Why" image="/images/tmp.png" subtitle="Why Reproducible Neuroimaging" >}} +{{< card link="/getting-started/index.html" title="Getting Started" image="/images/tmp.png" subtitle="Getting Started with ReproNim" >}} +{{< card link="/guide/index.html" title="Guide" image="/images/tmp.png" subtitle="ReproNim Guide" >}} +{{< card link="/fellowship/index.html" title="Fellowship" image="/images/tmp.png" subtitle="ReproNim Fellowship Program" >}} +{{< card link="/community/index.html" title="Community" image="/images/tmp.png" subtitle="Community Spotlight and News" >}} +{{< card link="/why-reproducible-neuroimaging/index.html" title="Why" image="/images/tmp.png" subtitle="Why Reproducible Neuroimaging" >}} {{< /cards >}} diff --git a/content/about/_index.md b/content/about/_index.md index e3c72dd..08a0491 100644 --- a/content/about/_index.md +++ b/content/about/_index.md @@ -1,6 +1,6 @@ --- title: About -type: docs +type: about --- - We are a National Center funded through the NIH diff --git a/content/about/eab.md b/content/about/eab.md index 1290585..4b37400 100644 --- a/content/about/eab.md +++ b/content/about/eab.md @@ -1,6 +1,5 @@ --- title: "External Advisory Board" -type: docs date: 2024-10-25T14:55:28-04:00 --- diff --git a/content/community/_index.md b/content/community/_index.md index 3babf87..241bf38 100644 --- a/content/community/_index.md +++ b/content/community/_index.md @@ -4,20 +4,11 @@ date: 2024-10-25T14:39:59-04:00 draft: false --- -#### Contact us - +- News stories + - From ReproNim users/fellows + - On Reproducibility in general +- Papers published using ReproNim and statistics + - ReproNim by the numbers??? - [The ReproNim Blog](https://repronim.wordpress.com/) -- Sign up for our mailing list -- How to report site errors -- Link to Training under Resources -- Become a collaborator -- Let us help you → service project -- Become a fellow -- Your materials here → Contribute training, news, highlights -- Join our webinar series -- Sign up for our mailing list - -#### Calendar - - Webinars/office hours -- Fellows application deadlines +- Sign up for our mailing list diff --git a/content/community/news.md b/content/community/news.md deleted file mode 100644 index 3e1e345..0000000 --- a/content/community/news.md +++ /dev/null @@ -1,9 +0,0 @@ ---- -title: "News" ---- - -## Stub - -- From ReproNim users/fellows -- On Reproducibility in general -- Papers published using ReproNim and statistics diff --git a/content/community/publications.md b/content/community/publications.md deleted file mode 100644 index 488f201..0000000 --- a/content/community/publications.md +++ /dev/null @@ -1,5 +0,0 @@ ---- -title: "Publications" ---- -- Papers published using ReproNim and statistics - - ReproNim by the numbers??? diff --git a/content/docs/getting-started/estimating-cost.md b/content/docs/getting-started/estimating-cost.md deleted file mode 100644 index cce7a8e..0000000 --- a/content/docs/getting-started/estimating-cost.md +++ /dev/null @@ -1,15 +0,0 @@ ---- -title: Estimating Cost -linkTitle: Estimating Cost -type: docs -weight: 3 ---- - -## How much will it cost? - -1. Direct Resource Cost: Are the infrastructure requirements currently met? (Cloud Infrastructure and Physical Hardware) -1. What tools and standards need to be adopted? -1. Do any lab members/collaborators already have experience with the new tools and standards? -1. How comfortable are the collaborators with technical fundamentals like the command line? - - diff --git a/content/docs/tutorials/_index.md b/content/docs/tutorials/_index.md deleted file mode 100644 index 5271d12..0000000 --- a/content/docs/tutorials/_index.md +++ /dev/null @@ -1,13 +0,0 @@ ---- -title: Tutorials -type: docs -weight: 5 ---- - -### How to… - -- How do I convert from DICOM to BIDS -- How do I create a data dictionary? -- How to configure SPM/Freesurfer to … - - diff --git a/content/docs/getting-started/_index.md b/content/getting-started/_index.md similarity index 100% rename from content/docs/getting-started/_index.md rename to content/getting-started/_index.md diff --git a/content/docs/getting-started/principals.md b/content/getting-started/basics.md similarity index 60% rename from content/docs/getting-started/principals.md rename to content/getting-started/basics.md index 065c41a..7fc682c 100644 --- a/content/docs/getting-started/principals.md +++ b/content/getting-started/basics.md @@ -1,10 +1,12 @@ --- -title: Principals of Reproducible Neuroimaging -linkTitle: Principals +title: The Basics of Reproducible Neuroimaging +linkTitle: Basics type: docs weight: 1 --- +## ReproNim Best Practices + 1. Proper planning: 1. See: Reproducible Results 1. Good science basics, how many subjects etc @@ -21,5 +23,12 @@ weight: 1 1. Use containers where reasonable 1. Re-executable publications +## How much will it cost? + +1. Direct Resource Cost: Are the infrastructure requirements currently met? (Cloud Infrastructure and Physical Hardware) +1. What tools and standards need to be adopted? +1. Do any lab members/collaborators already have experience with the new tools and standards? +1. How comfortable are the collaborators with technical fundamentals like the command line? + ## Basic Implementations diff --git a/content/docs/ecosystem.md b/content/getting-started/ecosystem.md similarity index 100% rename from content/docs/ecosystem.md rename to content/getting-started/ecosystem.md diff --git a/content/docs/getting-started/implementation.md b/content/getting-started/implementation.md similarity index 92% rename from content/docs/getting-started/implementation.md rename to content/getting-started/implementation.md index bb9c23f..dc7f66c 100644 --- a/content/docs/getting-started/implementation.md +++ b/content/getting-started/implementation.md @@ -1,5 +1,5 @@ --- -title: Implementation +title: Basic implementations linkTitle: Implementations type: docs weight: 5 diff --git a/content/docs/_index.md b/content/guide/_index.md similarity index 74% rename from content/docs/_index.md rename to content/guide/_index.md index 4801e09..74d73c9 100644 --- a/content/docs/_index.md +++ b/content/guide/_index.md @@ -1,8 +1,10 @@ --- -title: Documentation -type: docs +title: ReproNim Guide +type: resources --- +## The ReproNim Guide/The ReproNim Handbook + ### ReproNim Core Toolset (tools featured in use case for now) [Tool directory](tools/index.html) @@ -24,12 +26,3 @@ Here we list test products, scripts, other things that might be useful, but at t - How do I convert from DICOM to BIDS - How do I create a data dictionary? - How to configure SPM/Freesurfer to … - -### Training Materials -- ReproNim training materials - - -### MISC -- Sample NIH Data Management and Sharing Plan for neuroimaging -- ReproNim User Personas -- FAQs diff --git a/content/docs/tools/_index.md b/content/guide/tools/_index.md similarity index 96% rename from content/docs/tools/_index.md rename to content/guide/tools/_index.md index a3fd7f6..039e709 100644 --- a/content/docs/tools/_index.md +++ b/content/guide/tools/_index.md @@ -1,7 +1,6 @@ --- title: "Tools" date: 2024-10-28T15:14:39-04:00 -weight: 10 --- ## ReproNim Core Tools diff --git a/content/docs/tools/bids/_index.md b/content/guide/tools/bids/_index.md similarity index 100% rename from content/docs/tools/bids/_index.md rename to content/guide/tools/bids/_index.md diff --git a/content/docs/tools/datalad/_index.md b/content/guide/tools/datalad/_index.md similarity index 100% rename from content/docs/tools/datalad/_index.md rename to content/guide/tools/datalad/_index.md diff --git a/content/docs/tools/neurobagel/_index.md b/content/guide/tools/neurobagel/_index.md similarity index 100% rename from content/docs/tools/neurobagel/_index.md rename to content/guide/tools/neurobagel/_index.md diff --git a/content/docs/tools/neurodocker/_index.md b/content/guide/tools/neurodocker/_index.md similarity index 100% rename from content/docs/tools/neurodocker/_index.md rename to content/guide/tools/neurodocker/_index.md diff --git a/content/docs/tools/nidm/_index.md b/content/guide/tools/nidm/_index.md similarity index 100% rename from content/docs/tools/nidm/_index.md rename to content/guide/tools/nidm/_index.md diff --git a/content/docs/tools/reproin/_index.md b/content/guide/tools/reproin/_index.md similarity index 100% rename from content/docs/tools/reproin/_index.md rename to content/guide/tools/reproin/_index.md diff --git a/content/docs/tools/reproschema/_index.md b/content/guide/tools/reproschema/_index.md similarity index 100% rename from content/docs/tools/reproschema/_index.md rename to content/guide/tools/reproschema/_index.md diff --git a/content/help/_index.md b/content/help/_index.md new file mode 100644 index 0000000..2f47b30 --- /dev/null +++ b/content/help/_index.md @@ -0,0 +1,8 @@ +--- +title: Help +--- + +- Contact us +- Site map/search +- How to report site errors +- Link to Training under Resources diff --git a/content/participate/_index.md b/content/participate/_index.md new file mode 100644 index 0000000..0cfd212 --- /dev/null +++ b/content/participate/_index.md @@ -0,0 +1,11 @@ +--- +title: Participate +type: participate +--- + +- Become a collaborator +- Let us help you → service project +- Become a fellow +- Your materials here → Contribute training, news, highlights +- Join our webinar series +- Sign up for our mailing list diff --git a/content/resources/_index.md b/content/resources/_index.md new file mode 100644 index 0000000..a26b84a --- /dev/null +++ b/content/resources/_index.md @@ -0,0 +1,12 @@ +--- +title: Resources +type: resources +--- + +- ReproNim training materials +- Sample NIH Data Management and Sharing Plan for neuroimaging +- ReproNim Guide + - Tools + - How to… +- ReproNim User Personas +- FAQs diff --git a/content/about/why.md b/content/why-reproducible-neuroimaging/_index.md similarity index 99% rename from content/about/why.md rename to content/why-reproducible-neuroimaging/_index.md index 9d4f66d..2ce0548 100644 --- a/content/about/why.md +++ b/content/why-reproducible-neuroimaging/_index.md @@ -1,6 +1,5 @@ --- title: "Why Reproducible Neuroimaging" -type: docs date: 2024-10-25T14:41:08-04:00 --- diff --git a/hugo.yaml b/hugo.yaml index 5f4118f..292d7cb 100644 --- a/hugo.yaml +++ b/hugo.yaml @@ -22,17 +22,17 @@ menu: # pageRef: /docs # weight: 1 - name: About - pageRef: /about/ + pageRef: /about/index.html weight: 2 - - name: Documentation - pageRef: /docs/ + - name: Resources + pageRef: /resources/index.html weight: 3 - - name: Fellowship - pageRef: /fellowship/ - weight: 5 - - name: Community - pageRef: /community/ + - name: Participate + pageRef: /participate/index.html weight: 7 + - name: Help + pageRef: /help/index.html + weight: 15 # - name: Contact ↗ # url: "https://github.com/imfing" # weight: 15 @@ -47,10 +47,10 @@ params: displayLogo: true logo: path: images/logo-square-256.png - width: 50 + width: 50 footer: - displayCopyright: true + displayCopyright: false displayPoweredBy: true editURL: diff --git a/i18n/en.yaml b/i18n/en.yaml deleted file mode 100644 index dfb723c..0000000 --- a/i18n/en.yaml +++ /dev/null @@ -1,14 +0,0 @@ -# backToTop: "Scroll to top" -# changeLanguage: "Change language" -# changeTheme: "Change theme" -# copyCode: "Copy code" -copyright: "© 2024 ReproNIM Project" -# dark: "Dark" -# editThisPage: "Edit this page on GitHub →" -# lastUpdated: "Last updated on" -# light: "Light" -# noResultsFound: "No results found." -# onThisPage: "On this page" -poweredBy: Deploys by Netlify -# readMore: "Read more →" -# searchPlaceholder: "Search..."