Convert publications static page into "taxonomies"

content/authors/_index.md

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+---
+title: Authors of ReproNim and related publications
+ordersectionsby: title
+---
+

content/publications/abrams-2021/cite.bib

@@ -0,0 +1,23 @@
+@article{abrams_2021,
+ author = {Abrams, Mathew Birdsall and Bjaalie, Jan G. and Das, Samir
+and Egan, Gary F. and Ghosh, Satrajit S. and Goscinski,
+Wojtek J. and Grethe, Jeffrey S. and Kotaleski, Jeanette
+Hellgren and Ho, Eric Tatt Wei and Kennedy, David N. and
+Lanyon, Linda J. and Leergaard, Trygve B. and Mayberg,
+Helen S. and Milanesi, Luciano and Mouček, Roman and
+Poline, J. B. and Roy, Prasun K. and Strother, Stephen C.
+and Tang, Tong Boon and Tiesinga, Paul and Wachtler, Thomas
+and Wójcik, Daniel K. and Martone, Maryann E.},
+ doi = {10.1007/s12021-020-09509-0},
+ issn = {1559-0089},
+ journal = {Neuroinformatics},
+ month = {January},
+ number = {1},
+ pages = {25–36},
+ publisher = {Springer Science and Business Media LLC},
+ title = {A Standards Organization for Open and FAIR Neuroscience:
+the International Neuroinformatics Coordinating Facility},
+ url = {http://dx.doi.org/10.1007/s12021-020-09509-0},
+ volume = {20},
+ year = {2021}
+}

content/publications/abrams-2021/index.md

@@ -0,0 +1,37 @@
+---
+title: 'A Standards Organization for Open and FAIR Neuroscience: the International
+  Neuroinformatics Coordinating Facility'
+authors:
+- Mathew Birdsall Abrams
+- Jan G. Bjaalie
+- Samir Das
+- Gary F. Egan
+- Satrajit S. Ghosh
+- Wojtek J. Goscinski
+- Jeffrey S. Grethe
+- Jeanette Hellgren Kotaleski
+- Eric Tatt Wei Ho
+- David N. Kennedy
+- Linda J. Lanyon
+- Trygve B. Leergaard
+- Helen S. Mayberg
+- Luciano Milanesi
+- Roman Mouček
+- J. B. Poline
+- Prasun K. Roy
+- Stephen C. Strother
+- Tong Boon Tang
+- Paul Tiesinga
+- Thomas Wachtler
+- Daniel K. Wójcik
+- Maryann E. Martone
+date: '2021-01-01'
+publishDate: '2024-12-19T23:16:36.346376Z'
+publication_types:
+- article-journal
+publication: '*Neuroinformatics*'
+doi: 10.1007/s12021-020-09509-0
+links:
+- name: URL
+  url: http://dx.doi.org/10.1007/s12021-020-09509-0
+---

content/publications/bandrowski-2016/cite.bib

@@ -0,0 +1,15 @@
+@article{bandrowski_2016,
+ author = {Bandrowski, Anita E. and Martone, Maryann E.},
+ doi = {10.1016/j.neuron.2016.04.030},
+ issn = {0896-6273},
+ journal = {Neuron},
+ month = {May},
+ number = {3},
+ pages = {434–436},
+ publisher = {Elsevier BV},
+ title = {RRIDs: A Simple Step toward Improving Reproducibility
+through Rigor and Transparency of Experimental Methods},
+ url = {http://dx.doi.org/10.1016/j.neuron.2016.04.030},
+ volume = {90},
+ year = {2016}
+}

content/publications/bandrowski-2016/index.md

@@ -0,0 +1,16 @@
+---
+title: 'RRIDs: A Simple Step toward Improving Reproducibility through Rigor and Transparency
+  of Experimental Methods'
+authors:
+- Anita E. Bandrowski
+- Maryann E. Martone
+date: '2016-05-01'
+publishDate: '2024-12-19T23:16:36.352565Z'
+publication_types:
+- article-journal
+publication: '*Neuron*'
+doi: 10.1016/j.neuron.2016.04.030
+links:
+- name: URL
+  url: http://dx.doi.org/10.1016/j.neuron.2016.04.030
+---

content/publications/bannier-2021/cite.bib

@@ -0,0 +1,29 @@
+@article{bannier_2021,
+ author = {Bannier, Elise and Barker, Gareth and Borghesani,
+Valentina and Broeckx, Nils and Clement, Patricia and
+Emblem, Kyrre E. and Ghosh, Satrajit and Glerean, Enrico
+and Gorgolewski, Krzysztof J. and Havu, Marko and
+Halchenko, Yaroslav O. and Herholz, Peer and Hespel, Anne
+and Heunis, Stephan and Hu, Yue and Hu, Chuan‐Peng and
+Huijser, Dorien and de la Iglesia Vayá, María and
+Jancalek, Radim and Katsaros, Vasileios K. and Kieseler,
+Marie‐Luise and Maumet, Camille and Moreau, Clara A. and
+Mutsaerts, Henk‐Jan and Oostenveld, Robert and
+Ozturk‐Isik, Esin and Pascual Leone Espinosa, Nicolas and
+Pellman, John and Pernet, Cyril R and Pizzini, Francesca
+Benedetta and Trbalić, Amira Šerifović and Toussaint,
+Paule‐Joanne and Visconti di Oleggio Castello, Matteo and
+Wang, Fengjuan and Wang, Cheng and Zhu, Hua},
+ doi = {10.1002/hbm.25351},
+ issn = {1097-0193},
+ journal = {Human Brain Mapping},
+ month = {February},
+ number = {7},
+ pages = {1945–1951},
+ publisher = {Wiley},
+ title = {The Open Brain Consent: Informing research participants
+and obtaining consent to share brain imaging data},
+ url = {http://dx.doi.org/10.1002/hbm.25351},
+ volume = {42},
+ year = {2021}
+}

content/publications/bannier-2021/index.md

@@ -0,0 +1,50 @@
+---
+title: 'The Open Brain Consent: Informing research participants and obtaining consent
+  to share brain imaging data'
+authors:
+- Elise Bannier
+- Gareth Barker
+- Valentina Borghesani
+- Nils Broeckx
+- Patricia Clement
+- Kyrre E. Emblem
+- Satrajit Ghosh
+- Enrico Glerean
+- Krzysztof J. Gorgolewski
+- Marko Havu
+- Yaroslav O. Halchenko
+- Peer Herholz
+- Anne Hespel
+- Stephan Heunis
+- Yue Hu
+- Chuan‐Peng Hu
+- Dorien Huijser
+- María de la Iglesia Vayá
+- Radim Jancalek
+- Vasileios K. Katsaros
+- Marie‐Luise Kieseler
+- Camille Maumet
+- Clara A. Moreau
+- Henk‐Jan Mutsaerts
+- Robert Oostenveld
+- Esin Ozturk‐Isik
+- Nicolas Pascual Leone Espinosa
+- John Pellman
+- Cyril R Pernet
+- Francesca Benedetta Pizzini
+- Amira Šerifović Trbalić
+- Paule‐Joanne Toussaint
+- Matteo Visconti di Oleggio Castello
+- Fengjuan Wang
+- Cheng Wang
+- Hua Zhu
+date: '2021-02-01'
+publishDate: '2024-12-19T23:16:36.356531Z'
+publication_types:
+- article-journal
+publication: '*Human Brain Mapping*'
+doi: 10.1002/hbm.25351
+links:
+- name: URL
+  url: http://dx.doi.org/10.1002/hbm.25351
+---

content/publications/baranger-2021/cite.bib

@@ -0,0 +1,15 @@
+@article{baranger_2021,
+ author = {Baranger, David A.A. and Halchenko, Yaroslav O. and Satz,
+Skye and Ragozzino, Rachel and Iyengar, Satish and Swartz,
+Holly A. and Manelis, Anna},
+ doi = {10.1016/j.mex.2021.101595},
+ issn = {2215-0161},
+ journal = {MethodsX},
+ pages = {101595},
+ publisher = {Elsevier BV},
+ title = {Protocol for a machine learning algorithm predicting
+depressive disorders using the T1w/T2w ratio},
+ url = {http://dx.doi.org/10.1016/j.mex.2021.101595},
+ volume = {8},
+ year = {2021}
+}

content/publications/baranger-2021/index.md

@@ -0,0 +1,21 @@
+---
+title: Protocol for a machine learning algorithm predicting depressive disorders using
+  the T1w/T2w ratio
+authors:
+- David A.A. Baranger
+- Yaroslav O. Halchenko
+- Skye Satz
+- Rachel Ragozzino
+- Satish Iyengar
+- Holly A. Swartz
+- Anna Manelis
+date: '2021-01-01'
+publishDate: '2024-12-19T23:16:36.361403Z'
+publication_types:
+- article-journal
+publication: '*MethodsX*'
+doi: 10.1016/j.mex.2021.101595
+links:
+- name: URL
+  url: http://dx.doi.org/10.1016/j.mex.2021.101595
+---

content/publications/bazeille-2021/cite.bib

@@ -0,0 +1,15 @@
+@article{bazeille_2021,
+ author = {Bazeille, Thomas and DuPre, Elizabeth and Richard, Hugo
+and Poline, Jean-Baptiste and Thirion, Bertrand},
+ doi = {10.1016/j.neuroimage.2021.118683},
+ issn = {1053-8119},
+ journal = {NeuroImage},
+ month = {December},
+ pages = {118683},
+ publisher = {Elsevier BV},
+ title = {An empirical evaluation of functional alignment using
+inter-subject decoding},
+ url = {http://dx.doi.org/10.1016/j.neuroimage.2021.118683},
+ volume = {245},
+ year = {2021}
+}

content/publications/bazeille-2021/index.md

@@ -0,0 +1,18 @@
+---
+title: An empirical evaluation of functional alignment using inter-subject decoding
+authors:
+- Thomas Bazeille
+- Elizabeth DuPre
+- Hugo Richard
+- Jean-Baptiste Poline
+- Bertrand Thirion
+date: '2021-12-01'
+publishDate: '2024-12-19T23:16:36.365494Z'
+publication_types:
+- article-journal
+publication: '*NeuroImage*'
+doi: 10.1016/j.neuroimage.2021.118683
+links:
+- name: URL
+  url: http://dx.doi.org/10.1016/j.neuroimage.2021.118683
+---

content/publications/bhagwat-2021/cite.bib

@@ -0,0 +1,18 @@
+@article{bhagwat_2021,
+ author = {Bhagwat, Nikhil and Barry, Amadou and Dickie, Erin W and
+Brown, Shawn T and Devenyi, Gabriel A and Hatano, Koji and
+DuPre, Elizabeth and Dagher, Alain and Chakravarty, Mallar
+and Greenwood, Celia M T and Misic, Bratislav and Kennedy,
+David N and Poline, Jean-Baptiste},
+ doi = {10.1093/gigascience/giaa155},
+ issn = {2047-217X},
+ journal = {GigaScience},
+ month = {January},
+ number = {1},
+ publisher = {Oxford University Press (OUP)},
+ title = {Understanding the impact of preprocessing pipelines on
+neuroimaging cortical surface analyses},
+ url = {http://dx.doi.org/10.1093/gigascience/giaa155},
+ volume = {10},
+ year = {2021}
+}

content/publications/bhagwat-2021/index.md

@@ -0,0 +1,27 @@
+---
+title: Understanding the impact of preprocessing pipelines on neuroimaging cortical
+  surface analyses
+authors:
+- Nikhil Bhagwat
+- Amadou Barry
+- Erin W Dickie
+- Shawn T Brown
+- Gabriel A Devenyi
+- Koji Hatano
+- Elizabeth DuPre
+- Alain Dagher
+- Mallar Chakravarty
+- Celia M T Greenwood
+- Bratislav Misic
+- David N Kennedy
+- Jean-Baptiste Poline
+date: '2021-01-01'
+publishDate: '2024-12-19T23:16:36.369515Z'
+publication_types:
+- article-journal
+publication: '*GigaScience*'
+doi: 10.1093/gigascience/giaa155
+links:
+- name: URL
+  url: http://dx.doi.org/10.1093/gigascience/giaa155
+---

content/publications/boaro-2022/cite.bib

@@ -0,0 +1,19 @@
+@article{boaro_2022,
+ author = {Boaro, Alessandro and Kaczmarzyk, Jakub R. and Kavouridis,
+Vasileios K. and Harary, Maya and Mammi, Marco and Dawood,
+Hassan and Shea, Alice and Cho, Elise Y. and Juvekar,
+Parikshit and Noh, Thomas and Rana, Aakanksha and Ghosh,
+Satrajit and Arnaout, Omar},
+ doi = {10.1038/s41598-022-19356-5},
+ issn = {2045-2322},
+ journal = {Scientific Reports},
+ month = {September},
+ number = {1},
+ publisher = {Springer Science and Business Media LLC},
+ title = {Deep neural networks allow expert-level brain meningioma
+segmentation and present potential for improvement of
+clinical practice},
+ url = {http://dx.doi.org/10.1038/s41598-022-19356-5},
+ volume = {12},
+ year = {2022}
+}

content/publications/boaro-2022/index.md

@@ -0,0 +1,27 @@
+---
+title: Deep neural networks allow expert-level brain meningioma segmentation and present
+  potential for improvement of clinical practice
+authors:
+- Alessandro Boaro
+- Jakub R. Kaczmarzyk
+- Vasileios K. Kavouridis
+- Maya Harary
+- Marco Mammi
+- Hassan Dawood
+- Alice Shea
+- Elise Y. Cho
+- Parikshit Juvekar
+- Thomas Noh
+- Aakanksha Rana
+- Satrajit Ghosh
+- Omar Arnaout
+date: '2022-09-01'
+publishDate: '2024-12-19T23:16:36.373740Z'
+publication_types:
+- article-journal
+publication: '*Scientific Reports*'
+doi: 10.1038/s41598-022-19356-5
+links:
+- name: URL
+  url: http://dx.doi.org/10.1038/s41598-022-19356-5
+---

content/publications/bollmann-2023/cite.bib

@@ -0,0 +1,26 @@
+@article{bollmann_2023,
+ author = {Bollmann, Steffen and Renton, Angela and Dao, Thuy and
+Johnstone, Tom and Civier, Oren and Sullivan, Ryan and
+White, David and Lyons, Paris and Slade, Benjamin and
+Abbott, David and Amos, Toluwani and Bollmann, Saskia and
+Botting, Andy and Campbell, Megan and Chang, Jeryn and
+Close, Thomas and Eckstein, Korbinian and Egan, Gary and
+Evas, Stefanie and Flandin, Guillaume and Garner, Kelly and
+Garrido, Marta and Ghosh, Satrajit and Grignard, Martin and
+Hannan, Anthony and Huber, Laurentius (Renzo) and
+Kaczmarzyk, Jakub and Kasper, Lars and Kuhlmann, Levin and
+Lou, Kexin and Mantilla-Ramos, Yorguin-Jose and Mattingley,
+Jason and Morris, Jo and Narayanan, Akshaiy and Pestilli,
+Franco and Puce, Aina and Ribeiro, Fernanda and Rogasch,
+Nigel and Rorden, Chris and Schira, Mark and Shaw, Thomas
+and Sowman, Paul and Spitz, Gershon and Stewart, Ashley and
+Ye, Xincheng and Zhu, Judy and Hughes, Matthew and
+Narayanan, Aswin},
+ doi = {10.21203/rs.3.rs-2649734/v1},
+ month = {March},
+ publisher = {Research Square Platform LLC},
+ title = {Neurodesk: An accessible, flexible, and portable data
+analysis environment for reproducible neuroimaging},
+ url = {http://dx.doi.org/10.21203/rs.3.rs-2649734/v1},
+ year = {2023}
+}