diff --git a/api_routes/routes.js b/api_routes/routes.js index 4e8f55c3..01ca60dd 100644 --- a/api_routes/routes.js +++ b/api_routes/routes.js @@ -9,6 +9,8 @@ const { handleAxiosError } = require('./utils'); const services = require('./services'); const external_apis = require('./external'); +const { getDrugDiseasePairs } = require('../explore/query/drug-disease'); + const samples = JSON.parse(fs.readFileSync(path.join(__dirname, './sample-query-cache.json'))); router.use('/', external_apis); @@ -58,6 +60,25 @@ router.route('/quick_answer') } }); +router.route('/explore/drug-disease') + .post(async (req, res) => { + const { sort, filters, pagination } = req.body; + + if (!pagination || !Number.isInteger(pagination.offset) || !Number.isInteger(pagination.limit)) return res.status(400).json({ error: 'Missing pagination' }); + if (pagination.limit < 1 || pagination.offset < 0) return res.status(400).json({ error: 'Invalid limit or offset value' }); + + const limit = Math.min(pagination.limit, 500); + const { offset } = pagination; + + try { + const results = await getDrugDiseasePairs({ sort, filters, pagination: { limit, offset } }); + return res.status(200).json(results); + } catch (error) { + console.error('Error in explore page query:', error, req.body); + return res.status(500).json({ error: 'Internal server error' }); + } + }); + router.route('/answer') .post(async (req, res) => { const { questionId, ara } = req.query; diff --git a/explore/README.md b/explore/README.md new file mode 100644 index 00000000..e69de29b diff --git a/explore/db_utils.js b/explore/db_utils.js new file mode 100644 index 00000000..c51413b4 --- /dev/null +++ b/explore/db_utils.js @@ -0,0 +1,37 @@ +const run = async (db, sql, params) => new Promise((res, rej) => { + db.run(sql, params, (err) => { + if (err) rej(err); + else res(); + }); +}); + +const get = async (db, sql, params) => new Promise((res, rej) => { + db.get(sql, params, (err, row) => { + if (err) rej(err); + else res(row); + }); +}); + +const all = async (db, sql, params) => new Promise((res, rej) => { + db.all(sql, params, (err, rows) => { + if (err) rej(err); + else res(rows); + }); +}); + +/** + * Same as normal template literal but 'sql' tag allows syntax highlighting in editor + */ +const sql = (strings, ...args) => strings.reduce((str, curr, i) => str + curr + (args[i] || ''), ''); + +module.exports = { + /** + * Promise-based wrappers for node-sqlite3. Attempts to mirror API, first param is db instance + */ + db_p: { + run, + get, + all, + }, + sql, +}; diff --git a/explore/query/drug-disease.js b/explore/query/drug-disease.js new file mode 100644 index 00000000..5b75fe73 --- /dev/null +++ b/explore/query/drug-disease.js @@ -0,0 +1,133 @@ +/* eslint-disable no-restricted-syntax */ +/* eslint-disable no-use-before-define */ +const path = require('path'); +const sqlite3 = require('sqlite3'); +const { db_p, sql } = require('../db_utils'); + +require('dotenv').config({ path: path.resolve(__dirname, '../../.env') }); + +const db = new sqlite3.Database(process.env.EXPLORE_DB); + +/** + * @param {{ + * sort?: { + * drug_name?: "asc" | "desc", + * disease_name?: "asc" | "desc", + * score?: "asc" | "desc", + * known?: "asc" | "desc", + * } + * filters?: { + * drug_name?: string, + * drug_id?: string, + * disease_name?: string, + * disease_id?: string, + * }, + * pagination: { + * limit: number, + * offset: number, + * } + * }} params + * @returns {Promise<{ + * rows: { + * drug_name: string, + * drug_id: string, + * disease_name: string, + * disease_id: string, + * score: number, + * known: number + * }[], + * num_of_results: number, + * limit: number, + * offset: number, + * }>} + */ +async function getDrugDiseasePairs({ sort, filters, pagination }) { + const { whereClause, whereParams } = buildWhereClause(filters); + const orderByClause = buildOrderByClause(sort); + + const { paginationClause, paginationParams } = buildPaginationClause(pagination.limit, pagination.offset); + + const params = [...whereParams, ...paginationParams]; + + const query = sql`\ + SELECT * FROM drug_disease_pairs${whereClause}${orderByClause}${paginationClause}\ + `; + const countQuery = sql`\ + SELECT COUNT(*) AS total FROM drug_disease_pairs${whereClause}\ + `; + + return new Promise((resolve, reject) => { + db.parallelize(() => { + Promise.all([ + db_p.all(db, query, params), + db_p.get(db, countQuery, whereParams), + ]) + .then(([rows, { total }]) => { + resolve({ + rows, + num_of_results: total, + ...pagination, + }); + }) + .catch(reject); + }); + }); +} + +function buildWhereClause(filters) { + const whereClauses = []; + const params = []; + + if (filters) { + if (filters.drug_name) { + whereClauses.push('drug_name LIKE ?'); + params.push(`%${filters.drug_name}%`); + } + if (filters.drug_id) { + whereClauses.push('drug_id LIKE ?'); + params.push(`%${filters.drug_id}%`); + } + if (filters.disease_name) { + whereClauses.push('disease_name LIKE ?'); + params.push(`%${filters.disease_name}%`); + } + if (filters.disease_id) { + whereClauses.push('disease_id LIKE ?'); + params.push(`%${filters.disease_id}%`); + } + } + + const whereClause = + (whereClauses.length > 0 ? ` WHERE ${whereClauses.join(' AND ')}` : ''); + return { whereClause, whereParams: params }; +} + +function buildOrderByClause(sort) { + let orderByClause = ''; + if (sort) { + const orderClauses = []; + for (const [column, direction] of Object.entries(sort)) { + if ( + ['drug_name', 'disease_name', 'score', 'known'].includes(column) && + ['asc', 'desc'].includes(direction) + ) { + orderClauses.push(`${column} ${direction.toUpperCase()}`); + } + } + if (orderClauses.length > 0) { + orderByClause += ` ORDER BY ${orderClauses.join(', ')}`; + } + } + return orderByClause; +} + +function buildPaginationClause(limit, offset) { + return { + paginationClause: ' LIMIT ? OFFSET ?', + paginationParams: [limit, offset], + }; +} + +module.exports = { + getDrugDiseasePairs, +}; diff --git a/explore/scripts/init-drug-disease.js b/explore/scripts/init-drug-disease.js new file mode 100644 index 00000000..b1f62965 --- /dev/null +++ b/explore/scripts/init-drug-disease.js @@ -0,0 +1,66 @@ +/* eslint-disable no-continue */ +/* eslint-disable no-console */ +/* eslint-disable no-restricted-syntax */ + +const fs = require('fs'); +const path = require('path'); +const sqlite3 = require('sqlite3'); +const { db_p, sql } = require('../db_utils'); + +require('dotenv').config({ path: path.resolve(__dirname, '../../.env') }); + +const input = '../data/raw/DrugtoDiseasePrediction-full-9-30-24.json'; +const lowerScoreLimit = 0.5; + +const db = new sqlite3.Database(process.env.EXPLORE_DB); + +(async () => { + await db_p.run(db, sql` + CREATE TABLE IF NOT EXISTS drug_disease_pairs ( + drug_name TEXT NOT NULL, + drug_id TEXT NOT NULL, + disease_name TEXT NOT NULL, + disease_id TEXT NOT NULL, + score REAL NOT NULL, + known BOOLEAN NOT NULL CHECK (known IN (0, 1)) + ) + `); + await db_p.run(db, sql`DELETE FROM drug_disease_pairs`); + + const rawMaps = JSON.parse( + fs.readFileSync(path.resolve(__dirname, input), 'utf-8'), + ); + + await db_p.run(db, sql`BEGIN TRANSACTION`); + for (const [id, score] of Object.entries(rawMaps.Score).sort((a, b) => b[1] - a[1])) { + if (score < lowerScoreLimit) continue; + + const drug = { + id: rawMaps.DrugID[id], + name: rawMaps.DrugName[id], + }; + const disease = { + id: rawMaps.DiseaseID[id], + name: rawMaps.DiseaseName[id], + }; + const known = rawMaps.Known[id] === '1'; + + const command = sql`INSERT INTO drug_disease_pairs VALUES (?, ?, ?, ?, ?, ?)`; + const params = [ + drug.name, + drug.id, + disease.name, + disease.id, + score, + known ? '1' : '0', + ]; + + try { + db_p.run(db, command, params); + } catch (err) { + console.error('Error:', err, 'Params:', params); + } + } + + await db_p.run(db, sql`COMMIT`); +})(); diff --git a/package-lock.json b/package-lock.json index afeea6f0..b6d7c3ea 100644 --- a/package-lock.json +++ b/package-lock.json @@ -14,6 +14,7 @@ "@material-ui/data-grid": "^4.0.0-alpha.2", "@material-ui/icons": "^4.9.1", "@material-ui/lab": "^4.0.0-alpha.56", + "@tanstack/react-table": "^8.20.5", "ag-grid-community": "^23.2.1", "ag-grid-react": "^23.2.1", "axios": "^0.21.1", @@ -52,7 +53,8 @@ "react-widgets": "^4.5.0", "regenerator-runtime": "^0.13.7", "shortid": "^2.2.15", - "slugify": "^1.4.5" + "slugify": "^1.4.5", + "sqlite3": "^5.1.7" }, "devDependencies": { "@babel/core": "^7.10.5", @@ -4050,6 +4052,13 @@ "resolved": "https://registry.npmjs.org/@emotion/weak-memoize/-/weak-memoize-0.2.5.tgz", "integrity": 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"yallist": "^4.0.0" + }, + "engines": { + "node": ">=10" + } + }, + "node_modules/tar-fs": { + "version": "2.1.1", + "resolved": "https://registry.npmjs.org/tar-fs/-/tar-fs-2.1.1.tgz", + "integrity": "sha512-V0r2Y9scmbDRLCNex/+hYzvp/zyYjvFbHPNgVTKfQvVrb6guiE/fxP+XblDNR011utopbkex2nM4dHNV6GDsng==", + "license": "MIT", + "dependencies": { + "chownr": "^1.1.1", + "mkdirp-classic": "^0.5.2", + "pump": "^3.0.0", + "tar-stream": "^2.1.4" + } + }, + "node_modules/tar-stream": { + "version": "2.2.0", + "resolved": "https://registry.npmjs.org/tar-stream/-/tar-stream-2.2.0.tgz", + "integrity": "sha512-ujeqbceABgwMZxEJnk2HDY2DlnUZ+9oEcb1KzTVfYHio0UE6dG71n60d8D2I4qNvleWrrXpmjpt7vZeF1LnMZQ==", + "license": "MIT", + "dependencies": { + "bl": "^4.0.3", + "end-of-stream": "^1.4.1", + "fs-constants": "^1.0.0", + "inherits": "^2.0.3", + "readable-stream": "^3.1.1" + }, + "engines": { + "node": ">=6" + } + }, + "node_modules/tar-stream/node_modules/readable-stream": { + "version": "3.6.2", + "resolved": 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"node_modules/tar/node_modules/mkdirp": { + "version": "1.0.4", + "resolved": "https://registry.npmjs.org/mkdirp/-/mkdirp-1.0.4.tgz", + "integrity": "sha512-vVqVZQyf3WLx2Shd0qJ9xuvqgAyKPLAiqITEtqW0oIUjzo3PePDd6fW9iFz30ef7Ysp/oiWqbhszeGWW2T6Gzw==", + "license": "MIT", + "bin": { + "mkdirp": "bin/cmd.js" + }, + "engines": { + "node": ">=10" + } + }, + "node_modules/tar/node_modules/yallist": { + "version": "4.0.0", + "resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz", + "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==", + "license": "ISC" + }, "node_modules/term-size": { "version": "2.2.0", "resolved": "https://registry.npmjs.org/term-size/-/term-size-2.2.0.tgz", @@ -27319,6 +28432,18 @@ "integrity": "sha1-oVe6QC2iTpv5V/mqadUk7tQpAaY=", "dev": true }, + "node_modules/tunnel-agent": { + "version": "0.6.0", + "resolved": "https://registry.npmjs.org/tunnel-agent/-/tunnel-agent-0.6.0.tgz", + "integrity": "sha512-McnNiV1l8RYeY8tBgEpuodCC1mLUdbSN+CYBL7kJsJNInOP8UjDDEwdk6Mw60vdLLrr5NHKZhMAOSrR2NZuQ+w==", + "license": "Apache-2.0", + "dependencies": { + "safe-buffer": "^5.0.1" + }, + "engines": { + "node": "*" + } + }, "node_modules/type-check": { "version": "0.4.0", "resolved": "https://registry.npmjs.org/type-check/-/type-check-0.4.0.tgz", @@ -27341,12 +28466,17 @@ } }, "node_modules/type-fest": { - "version": "0.8.1", - "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-0.8.1.tgz", - "integrity": "sha512-4dbzIzqvjtgiM5rw1k5rEHtBANKmdudhGyBEajN01fEyhaAIhsoKNy6y7+IN93IfpFtwY9iqi7kD+xwKhQsNJA==", + "version": "0.13.1", + "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-0.13.1.tgz", + "integrity": "sha512-34R7HTnG0XIJcBSn5XhDd7nNFPRcXYRZrBB2O2jdKqYODldSzBAqzsWoZYYvduky73toYS/ESqxPvkDf/F0XMg==", "dev": true, + "license": "(MIT OR CC0-1.0)", + "optional": true, "engines": { - "node": ">=8" + "node": ">=10" + }, + "funding": { + "url": "https://github.com/sponsors/sindresorhus" } }, "node_modules/type-is": { @@ -27374,6 +28504,21 @@ "is-typedarray": "^1.0.0" } }, + "node_modules/typescript": { + "version": "5.6.3", + "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.6.3.tgz", + "integrity": "sha512-hjcS1mhfuyi4WW8IWtjP7brDrG2cuDZukyrYrSauoXGNgx0S7zceP07adYkJycEr56BOUTNPzbInooiN3fn1qw==", + "dev": true, + "license": "Apache-2.0", + "peer": true, + "bin": { + "tsc": "bin/tsc", + "tsserver": "bin/tsserver" + }, + "engines": { + "node": ">=14.17" + } + }, "node_modules/ua-parser-js": { "version": "0.7.28", "resolved": "https://registry.npmjs.org/ua-parser-js/-/ua-parser-js-0.7.28.tgz", @@ -27478,7 +28623,7 @@ "version": "1.1.1", "resolved": "https://registry.npmjs.org/unique-filename/-/unique-filename-1.1.1.tgz", "integrity": "sha512-Vmp0jIp2ln35UTXuryvjzkjGdRyf9b2lTXuSYUiPmzRcl3FDtYqAwOnTJkAngD9SWhnoJzDbTKwaOrZ+STtxNQ==", - "dev": true, + "devOptional": true, "dependencies": { "unique-slug": "^2.0.0" } @@ -27487,7 +28632,7 @@ "version": "2.0.2", "resolved": "https://registry.npmjs.org/unique-slug/-/unique-slug-2.0.2.tgz", "integrity": "sha512-zoWr9ObaxALD3DOPfjPSqxt4fnZiWblxHIgeWqW8x7UqDzEtHEQLzji2cuJYQFCU6KmoJikOYAZlrTHHebjx2w==", - "dev": true, + "devOptional": true, "dependencies": { "imurmurhash": "^0.1.4" } @@ -27843,10 +28988,14 @@ } }, "node_modules/uuid": { - "version": "2.0.3", - "resolved": "https://registry.npmjs.org/uuid/-/uuid-2.0.3.tgz", - "integrity": "sha1-Z+LoY3lyFVMN/zGOW/nc6/1Hsho=", - "deprecated": "Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details." + "version": "8.3.2", + "resolved": "https://registry.npmjs.org/uuid/-/uuid-8.3.2.tgz", + "integrity": "sha512-+NYs2QeMWy+GWFOEm9xnn6HCDp0l7QBD7ml8zLUmJ+93Q5NF0NocErnwkTkXVFNiX3/fpC6afS8Dhb/gz7R7eg==", + "license": "MIT", + "peer": true, + "bin": { + "uuid": "dist/bin/uuid" + } }, "node_modules/v8-compile-cache": { "version": "2.1.1", @@ -27940,10 +29089,20 @@ "vis-util": "^1.1.6" } }, - "node_modules/vis-util": { + "node_modules/vis-network/node_modules/moment": { + "version": "2.24.0", + "resolved": "https://registry.npmjs.org/moment/-/moment-2.24.0.tgz", + "integrity": "sha512-bV7f+6l2QigeBBZSM/6yTNq4P2fNpSWj/0e7jQcy87A8e7o2nAfP/34/2ky5Vw4B9S446EtIhodAzkFCcR4dQg==", + "license": "MIT", + "engines": { + "node": "*" + } + }, + "node_modules/vis-network/node_modules/vis-util": { "version": "1.1.10", "resolved": "https://registry.npmjs.org/vis-util/-/vis-util-1.1.10.tgz", "integrity": "sha512-8hGSxsFi2ogYYweClQyITzWnirWgQ8p0i9M4d3OXMuUO8vjXrf+2zHOYI9OZbtUduxAWuMEePnS9BXDtPJmJ7Q==", + "license": "(Apache-2.0 OR MIT)", "dependencies": { "moment": "2.24.0", "vis-uuid": "1.1.3" @@ -27956,12 +29115,18 @@ "url": "https://opencollective.com/visjs" } }, - "node_modules/vis-util/node_modules/moment": { - "version": "2.24.0", - "resolved": "https://registry.npmjs.org/moment/-/moment-2.24.0.tgz", - "integrity": "sha512-bV7f+6l2QigeBBZSM/6yTNq4P2fNpSWj/0e7jQcy87A8e7o2nAfP/34/2ky5Vw4B9S446EtIhodAzkFCcR4dQg==", + "node_modules/vis-util": { + "version": "4.3.4", + "resolved": "https://registry.npmjs.org/vis-util/-/vis-util-4.3.4.tgz", + "integrity": "sha512-hJIZNrwf4ML7FYjs+m+zjJfaNvhjk3/1hbMdQZVnwwpOFJS/8dMG8rdbOHXcKoIEM6U5VOh3HNpaDXxGkOZGpw==", + "license": "(Apache-2.0 OR MIT)", + "peer": true, "engines": { - "node": "*" + "node": ">=8" + }, + "funding": { + "type": "opencollective", + "url": "https://opencollective.com/visjs" } }, "node_modules/vis-uuid": { @@ -27969,6 +29134,7 @@ "resolved": "https://registry.npmjs.org/vis-uuid/-/vis-uuid-1.1.3.tgz", "integrity": "sha512-2B6XdY1bkzbUh+TugmnAaFa61KO9R5pzBzIuFIm8a9FrkbxIdSmQXV+FbfkL8QunkQV/bT0JDLQ2puqCS2+0Og==", "deprecated": "We don't use this library anymore so you shouldn't either. Use e.g. 'uuid' instead!", + "license": "(Apache-2.0 OR MIT)", "engines": { "node": ">=8" } @@ -28691,6 +29857,16 @@ "integrity": "sha1-2e8H3Od7mQK4o6j6SzHD4/fm6Ho=", "dev": true }, + "node_modules/wide-align": { + "version": "1.1.5", + "resolved": "https://registry.npmjs.org/wide-align/-/wide-align-1.1.5.tgz", + "integrity": "sha512-eDMORYaPNZ4sQIuuYPDHdQvf4gyCF9rEEV/yPxGfwPkRodwEgiMUUXTx/dex+Me0wxx53S+NgUHaP7y3MGlDmg==", + "license": "ISC", + "optional": true, + "dependencies": { + "string-width": "^1.0.2 || 2 || 3 || 4" + } + }, "node_modules/widest-line": { "version": "3.1.0", "resolved": "https://registry.npmjs.org/widest-line/-/widest-line-3.1.0.tgz", diff --git a/package.json b/package.json index b09a292b..2b9b395e 100644 --- a/package.json +++ b/package.json @@ -50,6 +50,7 @@ "@material-ui/data-grid": "^4.0.0-alpha.2", "@material-ui/icons": "^4.9.1", "@material-ui/lab": "^4.0.0-alpha.56", + "@tanstack/react-table": "^8.20.5", "ag-grid-community": "^23.2.1", "ag-grid-react": "^23.2.1", "axios": "^0.21.1", @@ -88,7 +89,8 @@ "react-widgets": "^4.5.0", "regenerator-runtime": "^0.13.7", "shortid": "^2.2.15", - "slugify": "^1.4.5" + "slugify": "^1.4.5", + "sqlite3": "^5.1.7" }, "scripts": { "start": "webpack --mode=development --config webpack.dev.js && nodemon server.js", diff --git a/src/API/explorePage.js b/src/API/explorePage.js new file mode 100644 index 00000000..08c4094b --- /dev/null +++ b/src/API/explorePage.js @@ -0,0 +1,24 @@ +import utils from './utils'; +import { api } from './baseUrlProxy'; + +const routes = { + async getDrugChemicalPairs() { + let response; + try { + response = await api.post( + '/api/explore/drug-disease', + { + pagination: { + offset: 0, + limit: 1000, + }, + }, + ); + } catch (error) { + return utils.handleAxiosError(error); + } + return response.data.rows; + }, +}; + +export default routes; diff --git a/src/App.jsx b/src/App.jsx index 72f2bda2..edf3516d 100644 --- a/src/App.jsx +++ b/src/App.jsx @@ -11,6 +11,7 @@ import Guide from '~/pages/Guide'; import Tutorial from '~/pages/Tutorial'; import TermsofService from '~/pages/TermsofService'; import QueryBuilder from '~/pages/queryBuilder/QueryBuilder'; +import Explore from '~/pages/explore/Explore'; import Answer from '~/pages/answer/Answer'; import QuestionList from '~/pages/questionList/QuestionList'; @@ -72,6 +73,9 @@ export default function App() { + + + diff --git a/src/components/Table.jsx b/src/components/Table.jsx new file mode 100644 index 00000000..006dabe2 --- /dev/null +++ b/src/components/Table.jsx @@ -0,0 +1,7 @@ +import React from 'react'; + +// drug_name + +export default function Table() { + return
Hello
; +} diff --git a/src/components/header/Header.jsx b/src/components/header/Header.jsx index de5152b8..58097a17 100644 --- a/src/components/header/Header.jsx +++ b/src/components/header/Header.jsx @@ -14,6 +14,7 @@ export default function Header() {
Question Builder + Explore About Guide Tutorial diff --git a/src/pages/explore/DrugDiseasePairs.jsx b/src/pages/explore/DrugDiseasePairs.jsx new file mode 100644 index 00000000..7d0f0211 --- /dev/null +++ b/src/pages/explore/DrugDiseasePairs.jsx @@ -0,0 +1,179 @@ +import { Button, makeStyles } from '@material-ui/core'; +import { ArrowRight } from '@material-ui/icons'; +import React from 'react'; +import { + Grid, Row, Col, +} from 'react-bootstrap'; +import { useHistory, Link } from 'react-router-dom'; +import QueryBuilderContext from '~/context/queryBuilder'; +import useQueryBuilder from '../queryBuilder/useQueryBuilder'; +import explorePage from '~/API/explorePage'; + +const useStyles = makeStyles({ + hover: { + '& .MuiButtonBase-root': { + visibility: 'hidden', + }, + '&:hover .MuiButtonBase-root': { + visibility: 'visible', + }, + }, +}); + +const fetchPairs = explorePage.getDrugChemicalPairs; + +export default function DrugDiseasePairs() { + const [pairs, setPairs] = React.useState([]); + const [isLoading, setIsLoading] = React.useState(true); + + // eslint-disable-next-line no-unused-vars + const [error, setError] = React.useState(null); + + const queryBuilder = useQueryBuilder(QueryBuilderContext); + const history = useHistory(); + + const handleStartQuery = (pair) => { + const query = { + message: { + query_graph: { + nodes: { + n0: { + name: pair.disease.name, + ids: [pair.disease.id], + }, + n1: { + name: pair.drug.name, + ids: [pair.drug.id], + }, + }, + edges: { + e0: { + subject: 'n0', + object: 'n1', + predicates: [ + 'biolink:related_to', + ], + }, + }, + }, + }, + }; + + queryBuilder.dispatch({ type: 'saveGraph', payload: query }); + history.push('/'); + }; + + const classes = useStyles(); + + React.useEffect(() => { + let ignore = false; + + (async () => { + try { + const data = await fetchPairs(); + + if (ignore) return; + + setPairs(data); + setIsLoading(false); + } catch (e) { + setError(e.message); + setIsLoading(false); + } + })(); + + return () => { + ignore = true; + }; + }, []); + + return ( + + + + ← View all datasets +

Drug - Disease Pairs

+

+ These drug-disease pairs were generated using a machine learning model to align with the nodes + in the ROBOKOP knowledge graph. They highlight potential associations between various drugs and + a broad range of diseases, suggesting possible avenues for further research. These connections + can serve as a starting point for a new query by hovering over a pair and clicking “Start a Query”. +

+ +

+ Scores with an asterisk and underline means the drug-disease pair is already known. The score is still + predicted using the trained model. +

+ +
+ + {isLoading ? 'Loading...' : ( + + + + + + + + + + { + pairs.map((pair, i) => ( + + + + + + + )) + } + +
+

Disease

+ + 		+

Drug

+ + 		+

Score

+
+ {pair.disease_name} + {pair.disease_id} + + {pair.drug_name} + {pair.drug_id} + + { + pair.known ? ( + + {pair.score.toFixed(6)}* + + ) : ( + pair.score.toFixed(6) + ) + } +
+ )} + + + + ); +} + +function Chip({ children }) { + return ( + + {children} + + ); +} diff --git a/src/pages/explore/Explore.jsx b/src/pages/explore/Explore.jsx new file mode 100644 index 00000000..90944cb4 --- /dev/null +++ b/src/pages/explore/Explore.jsx @@ -0,0 +1,52 @@ +import React from 'react'; +import { + Grid, Row, Col, +} from 'react-bootstrap'; +import { + Switch, Route, Link, useRouteMatch, +} from 'react-router-dom'; +import DrugChemicalPairs from './DrugDiseasePairs'; + +export default function Explore() { + const match = useRouteMatch(); + + return ( + + + + + + + + + ); +} + +function Index() { + const match = useRouteMatch(); + + return ( + + + +

Explore

+

+ Click a link below to view a curated dataset that can be further explored in the ROBOKOP query builder or answer explorer. +

+ +
+ + + Drug to Disease Pairs + +

+ These drug-disease pairs were generated using a machine learning model to align with the nodes + in the ROBOKOP knowledge graph. They highlight potential associations between various drugs and + a broad range of diseases, suggesting possible avenues for further research. These connections + can serve as a starting point for a new query by hovering over a pair and clicking “Start a Query”. +

+ + + + ); +}