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ZELDA v0.1.10
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@RoccoDAnt RoccoDAnt released this 26 Jan 16:22
· 20 commits to main since this release
v0.1.10
3f0e9ef

"ZELDA: a 3D Image Segmentation and Parent-Child relation plugin for microscopy image analysis in napari"

Authors: Rocco D'Antuono, Giuseppina Pisignano

Article: Front. Comput. Sci., 04 January 2022 | https://doi.org/10.3389/fcomp.2021.796117
Examples of 2D and 3D data sets: https://doi.org/10.5281/zenodo.5651284

PROTOCOLS:

"Segment a single object population"

The protocol allows to segment a single object type such as cell nuclei or vesicles.

"Segment two object populations and relate Parent to Child"

The protocol allows to segment in parallel two populations.
The larger objects, called Parents, may contain the smallest ones called "Children".
For example, cytoplasmic organelles can be segmented, labelled, and measured according to the parent cell.

"Data Plotter"

The protocol can be used to plot and save histograms and scatterplots of previously obtained result tables.

"Design a New Protocol"

A custom-made image analysis protocol can be assembled using the available functions, such as Threshold, GaussianBlur, etc.

Improvements:

  • can measure different images using the same labels and save multiple times the results
  • implemented Volume calculation

Fix:

  • image calibration
Assets 2
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