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examples.m
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% Plot some animal pathing
get_export_format = '.svg';
get_export_properties = 'High Quality';
output = fullfile(pwd,'results');
if ~exist(fullfile(output,'paperFigs','examples'),'dir')
mkdir(fullfile(output,'paperFigs','examples'))
end
% Full paths
load(fullfile(output,'full_paths.mat'),'paths');
for i = 1:3
f = plot_aapa(paths.items(i).points(:,2:3));
name = sprintf('p%d_tr%d_id%d_gr%d',...
i, paths.items(i).trial, paths.items(i).id, paths.items(i).group);
export_figure(f, fullfile(output,'paperFigs','examples'), name, get_export_format, get_export_properties);
close(f);
pts = paths.items(i).property('ARENA_COORDINATES');
f = plot_aapa(pts(:,2:3),'draw_shock');
name = sprintf('p%d_tr%d_id%d_gr%d_arena',...
i, paths.items(i).trial, paths.items(i).id, paths.items(i).group);
export_figure(f, fullfile(output,'paperFigs','examples'), name, get_export_format, get_export_properties);
close(f);
end
% Segments
load(fullfile(output,'segmentation_shock.mat'),'segments');
for i = 1:3
f = plot_aapa(segments.items(i).points(:,2:3));
name = sprintf('p%d_tr%d_id%d_gr%d_seg%d',...
i, segments.items(i).trial, segments.items(i).id, segments.items(i).group, segments.items(i).segment);
export_figure(f, fullfile(output,'paperFigs','examples'), name, get_export_format, get_export_properties);
close(f);
pts = segments.items(i).property('ARENA_COORDINATES');
ii = find(pts(:,1) >= segments.items(i).points(1,1));
jj = find(pts(:,1) <= segments.items(i).points(end,1));
if isempty(ii) || isempty(jj) || pts(ii(1),1) > pts(jj(end),1)
warning('Arena coordinates not found!')
ii = 1;
jj = size(pts,1);
end
f = plot_aapa(pts(ii(1):jj(end),2:3),'draw_shock');
name = sprintf('p%d_tr%d_id%d_gr%d_seg%d_arena',...
i, segments.items(i).trial, segments.items(i).id, segments.items(i).group, segments.items(i).segment);
export_figure(f, fullfile(output,'paperFigs','examples'), name, get_export_format, get_export_properties);
close(f);
end
% Subsegments
load(fullfile(output,'subsegmentation','subseg_0.6_5.mat'),'subsegments');
for i = 1:3
f = plot_aapa(subsegments.items(i).points(:,2:3));
name = sprintf('sub%d_tr%d_id%d_gr%d',...
i, subsegments.items(i).trial, subsegments.items(i).id, subsegments.items(i).group);
export_figure(f, fullfile(output,'paperFigs','examples'), name, get_export_format, get_export_properties);
close(f);
pts = subsegments.items(i).property('ARENA_COORDINATES');
ii = find(pts(:,1) >= subsegments.items(i).points(1,1));
jj = find(pts(:,1) <= subsegments.items(i).points(end,1));
if isempty(ii) || isempty(jj) || pts(ii(1),1) > pts(jj(end),1)
warning('Arena coordinates not found!')
ii = 1;
jj = size(pts,1);
end
f = plot_aapa(pts(ii(1):jj(end),2:3),'draw_shock');
name = sprintf('sub%d_tr%d_id%d_gr%d_arena',...
i, subsegments.items(i).trial, subsegments.items(i).id, subsegments.items(i).group);
export_figure(f, fullfile(output,'paperFigs','examples'), name, get_export_format, get_export_properties);
close(f);
end
% Classes
toplot = {[7,10,6035], [29,3365,6032], [5,103,2526], [50,309,520], [174,154,269]};
for i = 1:length(toplot)
switch i
case 1
c = 'TT';
case 2
c = 'IC';
case 3
c = 'FC';
case 4
c = 'CH';
case 5
c = 'AD';
otherwise
error('Wrong class')
end
for j = 1:length(toplot{i})
idx = toplot{i}(j);
f = plot_aapa(subsegments.items(idx).points(:,2:3));
name = sprintf('%s_sub%d_tr%d_id%d_gr%d',c,...
idx, subsegments.items(idx).trial, subsegments.items(idx).id, subsegments.items(idx).group);
export_figure(f, fullfile(output,'paperFigs','examples'), name, get_export_format, get_export_properties);
close(f);
pts = subsegments.items(idx).property('ARENA_COORDINATES');
ii = find(pts(:,1) >= subsegments.items(idx).points(1,1));
jj = find(pts(:,1) <= subsegments.items(idx).points(end,1));
if isempty(ii) || isempty(jj) || pts(ii(1),1) > pts(jj(end),1)
warning('Arena coordinates not found!')
ii = 1;
jj = size(pts,1);
end
f = plot_aapa(pts(ii(1):jj(end),2:3),'draw_shock');
name = sprintf('%s_sub%d_tr%d_id%d_gr%d_arena',c,...
idx, subsegments.items(idx).trial, subsegments.items(idx).id, subsegments.items(idx).group);
export_figure(f, fullfile(output,'paperFigs','examples'), name, get_export_format, get_export_properties);
close(f);
end
end