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optional installation instructions
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gillissierra committed Nov 8, 2020
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Expand Up @@ -25,14 +25,20 @@ source activate pyclone-vi
4. Install PyClone-VI
```
pip install git+ssh://git@github.com/aroth85/pyclone-vi.git
pip install git+https://github.com/Roth-Lab/pyclone-vi.git
```

5. If everything worked PyClone-VI should be available on the command line.
```
pyclone-vi --help
```

## Troubleshooting
If step 4 fails, try installing from the setup.py from within the pyclone-vi folder
```
python setup.py install
```

## Usage

## Quick start
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