From 25b5e31274816614457940411957b70617e8aeab Mon Sep 17 00:00:00 2001 From: Andrew Roth Date: Mon, 31 Aug 2020 14:58:06 -0700 Subject: [PATCH] updating cli help --- pyclone_vi/cli.py | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/pyclone_vi/cli.py b/pyclone_vi/cli.py index 2a8e2ab..ba78a8e 100644 --- a/pyclone_vi/cli.py +++ b/pyclone_vi/cli.py @@ -121,14 +121,13 @@ def fit(**kwargs): '-i', '--in-file', required=True, type=click.Path(exists=True, resolve_path=True), - help='''Path to TSV format file with copy number and allele count information for all samples.''' - '''See the examples directory in the GitHub repository for format.''' + help='''Path to HDF5 format file produced by the `fit` command.''' ) @click.option( '-o', '--out-file', required=True, type=click.Path(resolve_path=True), - help='''Path to where results will be written in HDF5 format.''' + help='''Path to where results will be written in tsv format.''' ) @click.option( '-c', '--compress',