Ondex is a framework for text mining, data integration and data analysis.
- At least Java 17. Note that we have migrated to this recently and Ondex doesn't work with Java 11 anymore.
- See the Downloads Page
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A tuturial on building knowledge grahs with KnetBuilder is available here
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We keep most of our documentation on this repository's wiki (note that there are many links on the right column in that page).
This repository is a rather big code base. The main submodules that it contains are described below.
This is the top-level POM, defining many common things shared by Ondex code.
The base code, used to build everything else.
What we use to build projects like KNetMiner.
Components for the desktop/GUI applications.
Optional components. NOTE: these are still linked by the components above (so, not so optional), but we usually
build them separately. If you build the whole ONDEX from this top repository, these optional modules will be built
from (the local clone of) this child repository, if you build an ONDEX component independently (e.g., by cloning
ondex-base and building from its local copy), some of these 'optional' components are still downloaded from our
Maven repositories as dependencies. This is because it is currently hard to modularise things further (we would need
to inspect the Java code).
Documentation and tutorials. Now replaced by the Wiki.
Old components, which are no longer used by ONDEX, not even as dependencies taken from our Maven repository.