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sgejobs 0.99.1

  • Add the accounting_files parameter to the accounting() family of functions now that archive files have been created at JHPCE for this type of SGE job information.

sgejobs 0.99.0

  • Added a NEWS.md file to track changes to the package.
  • Added the functions parse_task_ids() and parse_task_ids_builder() for parsing SGE task IDs.
  • Added the function array_submit() for submitting an SGE array job for a given set of input task IDs.
  • Added the function job_single() for creating a shell file for a new job that can be submitted using qsub.
  • Added the function job_loop() for creating a function that loops through a bash variable(s) to create shell scripts that are then submitted to SGE using qsub.
  • Added the functions log_date() and log_jobid() to find the start/end date from an SGE log file as well as the job id.
  • Added the function array_submit_num() for submitting an array job given a maximum task number. This function deals with the array task maximum imposed by JHPCE of 75000 tasks per array job.
  • Added the function accounting() with helper functions accounting_read() and accounting_parse() which read and parse the qacct information from SGE on a set of SGE job IDs and ultimately return a data.frame with the job summary information.