README.md

sgejobs

This package contains helper functions for Son of Grid Engine (SGE) cluster jobs, mostly with usage at the Joint High Performance Computing Exchange (JHPCE) cluster in mind. Please check the package documentation website for more information about how to use sgejobs.

Installation instructions

Get the latest stable R release from CRAN. Then install sgejobs using the following code:

## If needed:
if (!requireNamespace("remotes", quietly = TRUE))
   install.packages("remotes")

## Install with:
remotes::install_github('LieberInstitute/sgejobs')

Citation

Below is the citation output from using citation('sgejobs') in R. Please run this yourself to check for any updates on how to cite sgejobs.

citation('sgejobs')
#> 
#> To cite package 'sgejobs' in publications use:
#> 
#>   Leonardo Collado-Torres (2019). sgejobs: Helper functions for
#>   SGE jobs at JHPCE. R package version 0.99.1.
#>   https://github.com/LieberInstitute/sgejobs
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Manual{,
#>     title = {sgejobs: Helper functions for SGE jobs at JHPCE},
#>     author = {Leonardo Collado-Torres},
#>     year = {2019},
#>     note = {R package version 0.99.1},
#>     url = {https://github.com/LieberInstitute/sgejobs},
#>   }

Testing

Testing on Bioc-devel is feasible thanks to R Travis.