requirements.txt

# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
_libgcc_mutex=0.1=conda_forge
_openmp_mutex=4.5=2_gnu
adjusttext=0.7.3.1=py_1
aiofiles=22.1.0=pyhd8ed1ab_0
aiosqlite=0.18.0=pyhd8ed1ab_0
alsa-lib=1.2.8=h166bdaf_0
anyio=3.6.2=pyhd8ed1ab_0
appdirs=1.4.4=pyh9f0ad1d_0
argon2-cffi=21.3.0=pyhd3eb1b0_0
argon2-cffi-bindings=21.2.0=py310h5764c6d_3
asttokens=2.2.1=pyhd8ed1ab_0
atk-1.0=2.38.0=hd4edc92_1
attr=2.5.1=h166bdaf_1
attrs=22.2.0=pyh71513ae_0
babel=2.12.1=pyhd8ed1ab_1
backcall=0.2.0=pyhd3eb1b0_0
backports=1.0=pyhd8ed1ab_3
backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
beautifulsoup4=4.12.2=pyha770c72_0
biopython=1.81=py310h1fa729e_0
bleach=6.0.0=pyhd8ed1ab_0
bowtie2=2.5.1=py310h8d7afc0_0
brotli=1.0.9=h166bdaf_8
brotli-bin=1.0.9=h166bdaf_8
brotlipy=0.7.0=py310h5764c6d_1005
bzip2=1.0.8=h7f98852_4
c-ares=1.18.1=h7f98852_0
ca-certificates=2024.2.2=hbcca054_0
cairo=1.16.0=ha61ee94_1014
certifi=2024.2.2=pyhd8ed1ab_0
cffi=1.15.1=py310h255011f_3
charset-normalizer=3.1.0=pyhd8ed1ab_0
cloudpickle=2.2.1=pyhd8ed1ab_0
cobra=0.29.0=pyhd8ed1ab_0
colorama=0.4.6=pyhd8ed1ab_0
comm=0.1.3=pyhd8ed1ab_0
conda-package-handling=2.0.2=pyh38be061_0
conda-package-streaming=0.7.0=pyhd8ed1ab_1
contourpy=1.0.7=py310hdf3cbec_0
cryptography=40.0.2=py310h34c0648_0
cycler=0.11.0=pyhd8ed1ab_0
dbus=1.13.18=hb2f20db_0
deap=1.4.1=py310h7cbd5c2_0
debugpy=1.6.7=py310heca2aa9_0
decorator=5.1.1=pyhd3eb1b0_0
defusedxml=0.7.1=pyhd3eb1b0_0
depinfo=2.2.0=pyhd8ed1ab_0
dill=0.3.7=pyhd8ed1ab_0
diskcache=5.6.1=pyhd8ed1ab_0
dna_features_viewer=3.1.3=pyh7cba7a3_0
entrypoints=0.4=py310h06a4308_0
et_xmlfile=1.1.0=pyhd8ed1ab_0
executing=1.2.0=pyhd8ed1ab_0
expat=2.5.0=hcb278e6_1
fftw=3.3.10=nompi_hc118613_107
flit-core=3.8.0=pyhd8ed1ab_0
fmt=9.1.0=h924138e_0
font-ttf-dejavu-sans-mono=2.37=hab24e00_0
font-ttf-inconsolata=3.000=h77eed37_0
font-ttf-source-code-pro=2.038=h77eed37_0
font-ttf-ubuntu=0.83=hab24e00_0
fontconfig=2.14.2=h14ed4e7_0
fonts-conda-ecosystem=1=0
fonts-conda-forge=1=0
fonttools=4.39.3=py310h1fa729e_0
freetype=2.12.1=hca18f0e_1
fribidi=1.0.10=h36c2ea0_0
future=0.18.3=pyhd8ed1ab_0
gdk-pixbuf=2.42.10=h05c8ddd_0
gettext=0.21.1=h27087fc_0
gf2x=1.3.0=ha476b99_2
giflib=5.2.1=h0b41bf4_3
glib=2.76.1=h3eb15da_0
glib-tools=2.76.1=h3eb15da_0
glpk=5.0=h445213a_0
gmp=6.2.1=h58526e2_0
gmpy2=2.1.2=py310h3ec546c_1
graphite2=1.3.13=h58526e2_1001
graphviz=7.1.0=h2e5815a_0
gst-plugins-base=1.22.0=h4243ec0_2
gstreamer=1.22.0=h25f0c4b_2
gstreamer-orc=0.4.33=h166bdaf_0
gtk2=2.24.33=h90689f9_2
gts=0.7.6=h64030ff_2
h11=0.14.0=pyhd8ed1ab_0
h2=4.1.0=pyhd8ed1ab_0
harfbuzz=6.0.0=h8e241bc_0
hpack=4.0.0=pyh9f0ad1d_0
httpcore=0.17.0=pyhd8ed1ab_0
httpx=0.24.0=pyhd8ed1ab_1
hyperframe=6.0.1=pyhd8ed1ab_0
icu=70.1=h27087fc_0
idna=3.4=pyhd8ed1ab_0
importlib-metadata=6.5.0=pyha770c72_0
importlib_metadata=6.5.0=hd8ed1ab_0
importlib_resources=5.12.0=pyhd8ed1ab_0
ipykernel=6.22.0=pyh210e3f2_0
ipympl=0.9.3=pyhd8ed1ab_0
ipython=8.12.0=pyh41d4057_0
ipython_genutils=0.2.0=pyhd3eb1b0_1
ipywidgets=8.0.6=pyhd8ed1ab_0
jack=1.9.22=h11f4161_0
jedi=0.18.2=pyhd8ed1ab_0
jinja2=3.1.2=pyhd8ed1ab_1
joblib=1.2.0=pyhd8ed1ab_0
jpeg=9e=h0b41bf4_3
json5=0.9.6=pyhd3eb1b0_0
jsonpickle=2.2.0=pyhd8ed1ab_0
jsonschema=4.17.3=pyhd8ed1ab_0
jupyter=1.0.0=py310h06a4308_8
jupyter_client=7.3.4=pyhd8ed1ab_0
jupyter_console=6.6.3=pyhd8ed1ab_0
jupyter_contrib_core=0.4.0=pyhd8ed1ab_0
jupyter_contrib_nbextensions=0.7.0=pyhd8ed1ab_0
jupyter_core=5.3.0=py310hff52083_0
jupyter_events=0.6.3=pyhd8ed1ab_0
jupyter_highlight_selected_word=0.2.0=py310hff52083_1005
jupyter_latex_envs=1.4.6=pyhd8ed1ab_1002
jupyter_nbextensions_configurator=0.6.1=pyhd8ed1ab_0
jupyter_server=1.23.6=pyhd8ed1ab_0
jupyter_server_fileid=0.9.0=pyhd8ed1ab_0
jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
jupyter_server_ydoc=0.8.0=pyhd8ed1ab_0
jupyter_ydoc=0.2.3=pyhd8ed1ab_0
jupyterlab=3.6.3=pyhd8ed1ab_0
jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
jupyterlab_server=2.22.1=pyhd8ed1ab_0
jupyterlab_widgets=3.0.7=pyhd8ed1ab_0
keyutils=1.6.1=h166bdaf_0
kiwisolver=1.4.4=py310hbf28c38_1
krb5=1.20.1=h81ceb04_0
lame=3.100=h166bdaf_1003
lcms2=2.15=hfd0df8a_0
ld_impl_linux-64=2.40=h41732ed_0
lerc=4.0.0=h27087fc_0
libarchive=3.6.2=h3d51595_0
libblas=3.9.0=16_linux64_openblas
libbrotlicommon=1.0.9=h166bdaf_8
libbrotlidec=1.0.9=h166bdaf_8
libbrotlienc=1.0.9=h166bdaf_8
libcap=2.67=he9d0100_0
libcblas=3.9.0=16_linux64_openblas
libclang=15.0.7=default_had23c3d_1
libclang13=15.0.7=default_h3e3d535_1
libcups=2.3.3=h36d4200_3
libcurl=8.0.1=h588be90_0
libdb=6.2.32=h9c3ff4c_0
libdeflate=1.17=h0b41bf4_0
libedit=3.1.20221030=h5eee18b_0
libev=4.33=h516909a_1
libevent=2.1.10=h28343ad_4
libexpat=2.5.0=hcb278e6_1
libffi=3.4.2=h7f98852_5
libflac=1.4.2=h27087fc_0
libflint=2.9.0=h2f819a4_ntl_100
libgcc-ng=12.2.0=h65d4601_19
libgcrypt=1.10.1=h166bdaf_0
libgd=2.3.3=h5aea950_4
libgfortran-ng=12.2.0=h69a702a_19
libgfortran5=12.2.0=h337968e_19
libglib=2.76.1=ha491796_0
libgomp=12.2.0=h65d4601_19
libgpg-error=1.46=h620e276_0
libhwloc=2.9.1=hd6dc26d_0
libiconv=1.17=h166bdaf_0
liblapack=3.9.0=16_linux64_openblas
libllvm10=10.0.1=hbcb73fb_5
libllvm11=11.1.0=he0ac6c6_5
libllvm14=14.0.6=hcd5def8_4
libllvm15=15.0.7=hadd5161_1
libmamba=1.4.2=hcea66bb_0
libmambapy=1.4.2=py310h1428755_0
libnghttp2=1.52.0=h61bc06f_0
libnsl=2.0.0=h7f98852_0
libogg=1.3.4=h7f98852_1
libopenblas=0.3.21=pthreads_h78a6416_3
libopus=1.3.1=h7f98852_1
libpng=1.6.39=h753d276_0
libpq=15.2=hb675445_0
librsvg=2.54.4=h7abd40a_0
libsndfile=1.2.0=hb75c966_0
libsodium=1.0.18=h36c2ea0_1
libsolv=0.7.23=h3eb15da_0
libsqlite=3.40.0=h753d276_0
libssh2=1.10.0=hf14f497_3
libstdcxx-ng=12.2.0=h46fd767_19
libsystemd0=253=h8c4010b_1
libtiff=4.5.0=h6adf6a1_2
libtool=2.4.7=h27087fc_0
libudev1=253=h0b41bf4_1
libuuid=2.38.1=h0b41bf4_0
libvorbis=1.3.7=h9c3ff4c_0
libwebp=1.2.4=h1daa5a0_1
libwebp-base=1.2.4=h5eee18b_0
libxcb=1.13=h7f98852_1004
libxkbcommon=1.5.0=h79f4944_1
libxml2=2.10.3=hca2bb57_4
libxslt=1.1.37=h873f0b0_0
libzlib=1.2.13=h166bdaf_4
llvmlite=0.42.0=py310h1b8f574_1
lxml=4.9.2=py310hbdc0903_0
lz4-c=1.9.4=hcb278e6_0
lzo=2.10=h516909a_1000
markdown-it-py=2.2.0=pyhd8ed1ab_0
markupsafe=2.1.2=py310h1fa729e_0
matplotlib=3.7.1=py310hff52083_0
matplotlib-base=3.7.1=py310he60537e_0
matplotlib-inline=0.1.6=py310h06a4308_0
matplotlib-venn=0.11.9=pyhd8ed1ab_0
mdurl=0.1.0=pyhd8ed1ab_0
mistune=2.0.5=pyhd8ed1ab_0
mpc=1.3.1=hfe3b2da_0
mpfr=4.2.0=hb012696_0
mpg123=1.31.3=hcb278e6_0
mplcursors=0.5.1=pyhd8ed1ab_0
mpmath=1.3.0=pyhd8ed1ab_0
munkres=1.1.4=pyh9f0ad1d_0
mysql-common=8.0.32=ha901b37_1
mysql-libs=8.0.32=hd7da12d_1
nbclassic=0.5.5=pyhb4ecaf3_1
nbclient=0.7.3=pyhd8ed1ab_0
nbconvert=7.3.1=pyhd8ed1ab_0
nbconvert-core=7.3.1=pyhd8ed1ab_0
nbconvert-pandoc=7.3.1=pyhd8ed1ab_0
nbformat=5.8.0=pyhd8ed1ab_0
ncurses=6.4=h6a678d5_0
nest-asyncio=1.5.6=py310h06a4308_0
networkx=3.1=pyhd8ed1ab_0
notebook=6.5.4=pyha770c72_0
notebook-shim=0.2.2=py310h06a4308_0
nspr=4.35=h27087fc_0
nss=3.89=he45b914_0
ntl=11.4.3=hef3c4d3_1
numba=0.59.1=py310h7dc5dd1_0
numpy=1.26.4=py310hb13e2d6_0
openjpeg=2.5.0=hfec8fc6_2
openpyxl=3.1.1=py310h1fa729e_0
openssl=3.3.0=hd590300_0
optlang=1.6.1=pyhd8ed1ab_0
packaging=23.1=pyhd8ed1ab_0
pandas=2.0.0=py310h9b08913_0
pandoc=2.19.2=h32600fe_2
pandocfilters=1.5.0=pyhd3eb1b0_0
pango=1.50.14=hd33c08f_0
parso=0.8.3=pyhd3eb1b0_0
patsy=0.5.3=pyhd8ed1ab_0
pcre=8.45=h295c915_0
pcre2=10.40=hc3806b6_0
perl=5.32.1=2_h7f98852_perl5
pexpect=4.8.0=pyhd3eb1b0_3
pickleshare=0.7.5=pyhd3eb1b0_1003
pillow=9.4.0=py310h023d228_1
pip=23.1=pyhd8ed1ab_0
pixman=0.40.0=h36c2ea0_0
pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
platformdirs=3.2.0=pyhd8ed1ab_0
pluggy=1.0.0=pyhd8ed1ab_5
ply=3.11=py_1
pooch=1.7.0=pyha770c72_3
prometheus_client=0.16.0=pyhd8ed1ab_0
prompt-toolkit=3.0.38=pyha770c72_0
prompt_toolkit=3.0.38=hd8ed1ab_0
psutil=5.9.5=py310h1fa729e_0
pthread-stubs=0.4=h36c2ea0_1001
ptyprocess=0.7.0=pyhd3eb1b0_2
pulseaudio=16.1=hcb278e6_3
pulseaudio-client=16.1=h5195f5e_3
pulseaudio-daemon=16.1=ha8d29e2_3
pure_eval=0.2.2=pyhd3eb1b0_0
pybind11-abi=4=hd8ed1ab_3
pycosat=0.6.4=py310h5764c6d_1
pycparser=2.21=pyhd8ed1ab_0
pydantic=1.10.7=py310h1fa729e_0
pygments=2.15.1=pyhd8ed1ab_0
pymodulon=0.2.1=pyhd8ed1ab_0
pyopenssl=23.1.1=pyhd8ed1ab_0
pyparsing=3.0.9=pyhd8ed1ab_0
pyqt=5.15.7=py310hab646b1_3
pyqt5-sip=12.11.0=py310heca2aa9_3
pyrsistent=0.19.3=py310h1fa729e_0
pysocks=1.7.1=pyha2e5f31_6
python=3.10.10=he550d4f_0_cpython
python-dateutil=2.8.2=pyhd8ed1ab_0
python-fastjsonschema=2.16.3=pyhd8ed1ab_0
python-graphviz=0.20.1=pyh22cad53_0
python-json-logger=2.0.7=pyhd8ed1ab_0
python-libsbml=5.19.2=py310h122e73d_2
python-tzdata=2023.3=pyhd8ed1ab_0
python_abi=3.10=3_cp310
pytz=2023.3=pyhd8ed1ab_0
pyvis=0.3.1=pyhd8ed1ab_0
pyyaml=6.0=py310h5764c6d_5
pyzmq=25.0.2=py310h059b190_0
qt-main=5.15.8=h5d23da1_6
qt-webengine=5.15.8=h77d6d84_0
qtconsole=5.4.2=pyhd8ed1ab_0
qtconsole-base=5.4.2=pyha770c72_0
qtpy=2.3.1=pyhd8ed1ab_0
qtwebkit=5.212=h3e5094c_8
readline=8.2=h8228510_1
reproc=14.2.4=h0b41bf4_0
reproc-cpp=14.2.4=hcb278e6_0
requests=2.28.2=pyhd8ed1ab_1
rfc3339-validator=0.1.4=pyhd8ed1ab_0
rfc3986=2.0.0=pyhd8ed1ab_0
rfc3986-validator=0.1.1=pyh9f0ad1d_0
rich=13.3.4=pyhd8ed1ab_0
ruamel.yaml=0.17.21=py310h1fa729e_3
ruamel.yaml.clib=0.2.7=py310h1fa729e_1
scikit-learn=1.2.2=py310h41b6a48_1
scipy=1.10.1=py310h8deb116_0
screen=4.8.0=he28a2e2_0
seaborn=0.12.2=hd8ed1ab_0
seaborn-base=0.12.2=pyhd8ed1ab_0
send2trash=1.8.0=pyhd3eb1b0_1
setuptools=67.7.1=pyhd8ed1ab_0
shap=0.41.0=py310h769672d_0
sip=6.7.9=py310hc6cd4ac_0
six=1.16.0=pyh6c4a22f_0
slicer=0.0.7=pyhd8ed1ab_0
sniffio=1.3.0=pyhd8ed1ab_0
soupsieve=2.3.2.post1=py310h06a4308_0
sqlite=3.40.1=h5082296_0
stack_data=0.6.2=pyhd8ed1ab_0
statsmodels=0.13.5=py310hde88566_2
swiglpk=5.0.8=py310h5764c6d_1
symengine=0.10.1=ha533407_0
sympy=1.11.1=pypyh9d50eac_103
tbb=2021.9.0=hf52228f_0
terminado=0.17.1=py310h06a4308_0
threadpoolctl=3.1.0=pyh8a188c0_0
tinycss2=1.2.1=py310h06a4308_0
tk=8.6.12=h27826a3_0
toml=0.10.2=pyhd3eb1b0_0
tomli=2.0.1=py310h06a4308_0
toolz=0.12.0=pyhd8ed1ab_0
tqdm=4.65.0=pyhd8ed1ab_1
traitlets=5.9.0=pyhd8ed1ab_0
typing-extensions=4.5.0=hd8ed1ab_0
typing_extensions=4.5.0=pyha770c72_0
tzdata=2023c=h71feb2d_0
unicodedata2=15.0.0=py310h5764c6d_0
urllib3=1.26.15=pyhd8ed1ab_0
wcwidth=0.2.6=pyhd8ed1ab_0
webencodings=0.5.1=py310h06a4308_1
websocket-client=1.5.1=pyhd8ed1ab_0
wheel=0.40.0=pyhd8ed1ab_0
widgetsnbextension=4.0.7=pyhd8ed1ab_0
xcb-util=0.4.0=h516909a_0
xcb-util-image=0.4.0=h166bdaf_0
xcb-util-keysyms=0.4.0=h516909a_0
xcb-util-renderutil=0.3.9=h166bdaf_0
xcb-util-wm=0.4.1=h516909a_0
xkeyboard-config=2.38=h0b41bf4_0
xorg-kbproto=1.0.7=h7f98852_1002
xorg-libice=1.0.10=h7f98852_0
xorg-libsm=1.2.3=hd9c2040_1000
xorg-libx11=1.8.4=h0b41bf4_0
xorg-libxau=1.0.9=h7f98852_0
xorg-libxdmcp=1.1.3=h7f98852_0
xorg-libxext=1.3.4=h0b41bf4_2
xorg-libxrender=0.9.10=h7f98852_1003
xorg-renderproto=0.11.1=h7f98852_1002
xorg-xextproto=7.3.0=h0b41bf4_1003
xorg-xproto=7.0.31=h7f98852_1007
xz=5.2.10=h5eee18b_1
y-py=0.5.9=py310h4426083_0
yaml=0.2.5=h7f98852_2
yaml-cpp=0.7.0=h27087fc_2
ypy-websocket=0.8.2=pyhd8ed1ab_0
zeromq=4.3.4=h9c3ff4c_1
zipp=3.15.0=pyhd8ed1ab_0
zlib=1.2.13=h166bdaf_4
zstandard=0.19.0=py310hdeb6495_1
zstd=1.5.2=h3eb15da_6