2024_SISBID_R_packages.Rmd

---
title: "Packages to Install"
author: "Genevera I. Allen & Yufeng Liu"
output:
  pdf_document: default
  html_document:
    df_print: paged
---

#Install packages for demos and labs
```{r setup, include=FALSE}
options(repos="https://cran.rstudio.com" )
install.packages('GGally')
install.packages('igraph')
install.packages('fastICA')
install.packages('kknn')
install.packages('ggplot2')
install.packages('huge')
install.packages('glasso')
install.packages('umap')
if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Biobase")
BiocManager::install("GO.db")
BiocManager::install("impute")
BiocManager::install("preprocessCore")
install.packages('NMF')
#install.packages('WGCNA')
install.packages('ISLR')
install.packages('sda')
install.packages('Rtsne')
install.packages("tidyr")
install.packages("glmnet")
```