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@Sage-Bionetworks-Workflows

Sage-Bionetworks-Workflows

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  1. nextflow-infra nextflow-infra Public

    AWS CloudFormation templates for deploying Nextflow infrastructure

    Python 3 22

  2. py-orca py-orca Public

    Python package for connecting services and building data pipelines

    Python 5 1

  3. orca-recipes orca-recipes Public

    Open-source airflow deployment and production DAGs for the DPE team

    Python

  4. py-dcqc py-dcqc Public

    Python package for performing quality control (QC) for data coordination (DC)

    Python 3 3

  5. nf-synapse-challenge nf-synapse-challenge Public

    Forked from Sage-Bionetworks-Workflows/nf-dynamic-challenge

    Flexible framework for submission evaluation for challenges run on Synapse

    Python 5 2

  6. nf-synapse nf-synapse Public

    Centralized Repository for Synapse Operations in Nextflow

    Nextflow 2 1

Repositories

Showing 10 of 55 repositories
  • nf-genie Public

    Nextflow workflow for main GENIE processing

    Sage-Bionetworks-Workflows/nf-genie’s past year of commit activity
    Groovy 3 Apache-2.0 1 0 1 Updated Nov 26, 2024
  • eks-stack Public

    Kubernetes stack deployed to AWS EKS managed by OpenTofu & Spacelift

    Sage-Bionetworks-Workflows/eks-stack’s past year of commit activity
    HCL 4 1 0 1 Updated Nov 21, 2024
  • nextflow-infra Public

    AWS CloudFormation templates for deploying Nextflow infrastructure

    Sage-Bionetworks-Workflows/nextflow-infra’s past year of commit activity
    Python 3 Apache-2.0 22 0 3 Updated Nov 21, 2024
  • nf-agora Public

    Nextflow workflow for agora-data-tools data processing

    Sage-Bionetworks-Workflows/nf-agora’s past year of commit activity
    Nextflow 0 0 0 0 Updated Nov 6, 2024
  • orca-recipes Public

    Open-source airflow deployment and production DAGs for the DPE team

    Sage-Bionetworks-Workflows/orca-recipes’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 31, 2024
  • py-orca Public

    Python package for connecting services and building data pipelines

    Sage-Bionetworks-Workflows/py-orca’s past year of commit activity
    Python 5 Apache-2.0 1 0 0 Updated Oct 31, 2024
  • nf-cwl-wrap Public

    Nextflow wrapper for CWL workflows. Intended to enable CWL workflows to be automated to run on Tower

    Sage-Bionetworks-Workflows/nf-cwl-wrap’s past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 0 Updated Aug 21, 2024
  • py-dcqc Public

    Python package for performing quality control (QC) for data coordination (DC)

    Sage-Bionetworks-Workflows/py-dcqc’s past year of commit activity
    Python 3 Apache-2.0 3 1 0 Updated Aug 12, 2024
  • nf-synapse-challenge Public Forked from Sage-Bionetworks-Workflows/nf-dynamic-challenge

    Flexible framework for submission evaluation for challenges run on Synapse

    Sage-Bionetworks-Workflows/nf-synapse-challenge’s past year of commit activity
    Python 5 MIT 3 0 0 Updated Jul 31, 2024
  • py-optimize-nextflow Public

    Python script for optimizing resource allocations for Nextflow workflows based on past metrics

    Sage-Bionetworks-Workflows/py-optimize-nextflow’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jul 29, 2024
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