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Update index.md (PEtab and BondGraphs)
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TorkelE authored Oct 27, 2023
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models from reaction networks defined in Catalyst.
- [DelaySSAToolkit.jl](https://palmtree2013.github.io/DelaySSAToolkit.jl/dev/) can
augment Catalyst reaction network models with delays, and can simulate the
resulting stochastic chemical kinetics with delays models.
resulting stochastic chemical kinetics with delays models.
- [BondGraphs.jl](https://github.com/jedforrest/BondGraphs.jl) a package for
constructing and analyzing bond graphs models, which can take Catalyst models as input.
- [PEtab.jl](https://github.com/sebapersson/PEtab.jl) a package that implements the PEtab format for fitting reaction network ODEs to data. Input can be provided either as SBML files or as Catalyst `ReactionSystem`s.


## Installation
Catalyst can be installed through the Julia package manager:
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