From 6bafc053e6bd04405fdc0029ff99324ae11c80bb Mon Sep 17 00:00:00 2001 From: Torkel Date: Fri, 27 Oct 2023 11:06:05 -0400 Subject: [PATCH] Update index.md (PEtab and BondGraphs) --- docs/src/index.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/docs/src/index.md b/docs/src/index.md index 03a3726eee..bd3d9664d2 100644 --- a/docs/src/index.md +++ b/docs/src/index.md @@ -72,7 +72,11 @@ etc). models from reaction networks defined in Catalyst. - [DelaySSAToolkit.jl](https://palmtree2013.github.io/DelaySSAToolkit.jl/dev/) can augment Catalyst reaction network models with delays, and can simulate the - resulting stochastic chemical kinetics with delays models. + resulting stochastic chemical kinetics with delays models. +- [BondGraphs.jl](https://github.com/jedforrest/BondGraphs.jl) a package for + constructing and analyzing bond graphs models, which can take Catalyst models as input. +- [PEtab.jl](https://github.com/sebapersson/PEtab.jl) a package that implements the PEtab format for fitting reaction network ODEs to data. Input can be provided either as SBML files or as Catalyst `ReactionSystem`s. + ## Installation Catalyst can be installed through the Julia package manager: