From e1e07a359746afe64cbd2a8c53616f84afbaa7a5 Mon Sep 17 00:00:00 2001 From: Torkel Date: Wed, 15 Nov 2023 16:15:20 -0500 Subject: [PATCH] history file update --- HISTORY.md | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/HISTORY.md b/HISTORY.md index 069e74ae5d..553dc42ac3 100644 --- a/HISTORY.md +++ b/HISTORY.md @@ -1,6 +1,18 @@ # Breaking updates and feature summaries across releases ## Catalyst unreleased (master branch) +- Added CatalystStructuralIdentifiabilityExtension, which permits StructuralIdentifiability.jl function to be applied directly to Catalyst systems. E.g. use +```julia +goodwind_oscillator = @reaction_network begin + (mmr(P,pₘ,1), dₘ), 0 <--> M + (pₑ*M,dₑ), 0 <--> E + (pₚ*E,dₚ), 0 <--> P +end +assess_identifiability(goodwind_oscillator; measured_quantities=[:M]) +``` +to assess (global) structural identifiability for all parameters an variables of the `goodwind_oscillator` model (under the presumption that we can measure `M` only). +- Automatically handles conservation laws for structural identifiability problems (eliminates these internally to speed up computations). +- Add documentation for these features. - Simulation of spatial ODEs now supported. For full details, please see https://github.com/SciML/Catalyst.jl/pull/644 and upcoming documentation. Note that these methods are currently considered alpha, with the interface and approach changing even in non-breaking Catalyst releases. - LatticeReactionSystem structure represents a spatial reaction network: ```julia