diff --git a/docs/Project.toml b/docs/Project.toml index 1cb355487..fbc6a4185 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -1,5 +1,6 @@ [deps] AlgebraicMultigrid = "2169fc97-5a83-5252-b627-83903c6c433c" +ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" IncompleteLU = "40713840-3770-5561-ab4c-a76e7d0d7895" @@ -15,6 +16,7 @@ Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" [compat] AlgebraicMultigrid = "0.5, 0.6" +ArrayInterface = "6, 7" BenchmarkTools = "1" Documenter = "1" IncompleteLU = "0.2" diff --git a/docs/src/tutorials/advanced.md b/docs/src/tutorials/advanced.md index ca8ca0bd3..b86232901 100644 --- a/docs/src/tutorials/advanced.md +++ b/docs/src/tutorials/advanced.md @@ -55,7 +55,7 @@ are then applied at each point in space (they are broadcast). Use `dx=dy=1/32`. The resulting `NonlinearProblem` definition is: ```@example ill_conditioned_nlprob -using NonlinearSolve, LinearAlgebra, SparseArrays, LinearSolve +using NonlinearSolve, LinearAlgebra, SparseArrays, LinearSolve, Symbolics const N = 32 const xyd_brusselator = range(0, stop = 1, length = N) @@ -275,3 +275,28 @@ nothing # hide For more information on the preconditioner interface, see the [linear solver documentation](https://docs.sciml.ai/LinearSolve/stable/basics/Preconditioners/). + +## Speed up Jacobian computation with sparsity exploitation and matrix coloring + +To cut down the of Jacobian building overhead, we can choose to exploit the sparsity pattern and deploy matrix coloring during Jacobian construction. With NonlinearSolve.jl, we can simply use ```autodiff=AutoSparseForwardDiff()``` to automatically exploit the sparsity pattern of Jacobian matrices: + +```@example ill_conditioned_nlprob +@benchmark solve(prob_brusselator_2d, + NewtonRaphson(linsolve=KrylovJL_GMRES(), precs=incompletelu, concrete_jac=true, + autodiff=AutoSparseForwardDiff())); +nothing # hide +``` + +To setup matrix coloring for the jacobian sparsity pattern, we can simply get the coloring vector by using [ArrayInterface.jl](https://github.com/JuliaArrays/ArrayInterface.jl) for the sparsity pattern of `jac_prototype`: + +```@example ill_conditioned_nlprob +using ArrayInterface +colorvec = ArrayInterface.matrix_colors(jac_sparsity) +ff = NonlinearFunction(brusselator_2d_loop; jac_prototype=float.(jac_sparsity), colorvec) +prob_brusselator_2d_sparse = NonlinearProblem(ff, u0, p) + +@benchmark solve(prob_brusselator_2d_sparse, + NewtonRaphson(linsolve=KrylovJL_GMRES(), precs=incompletelu, concrete_jac=true, + autodiff=AutoSparseForwardDiff())); +nothing # hide +``` \ No newline at end of file