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OrdinaryDiffEqFIRK overwrites stepsize_controller! in OrdinaryDiffEqCore #2532

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cjoshliu opened this issue Nov 16, 2024 · 22 comments
Closed

OrdinaryDiffEqFIRK overwrites stepsize_controller! in OrdinaryDiffEqCore #2532

cjoshliu opened this issue Nov 16, 2024 · 22 comments
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@cjoshliu
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Describe the bug 🐞
OrdinaryDiffEqFIRK overwrites stepsize_controller! in OrdinaryDiffEqCore. This only happens when I also have DynamicalSystems installed.

I notice that OrdinaryDiffEqFIRK.PredictiveController was refactored just last week...

WARNING: Method definition stepsize_controller!(Any, OrdinaryDiffEqCore.PredictiveController, Any) in module OrdinaryDiffEqCore at /Users/joshualiu/.julia/packages/OrdinaryDiffEqCore/TbC1J/src/integrators/controllers.jl:404 overwritten in module OrdinaryDiffEqFIRK at /Users/joshualiu/.julia/packages/OrdinaryDiffEqFIRK/f9ugT/src/controllers.jl:1.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
  ? OrdinaryDiffEqFIRK
  ? OrdinaryDiffEq

Minimal Reproducible Example 👇

using OrdinaryDiffEq

Error & Stacktrace ⚠️

Precompiling OrdinaryDiffEq...
Info Given OrdinaryDiffEq was explicitly requested, output will be shown live 
WARNING: Method definition stepsize_controller!(Any, OrdinaryDiffEqCore.PredictiveController, Any) in module OrdinaryDiffEqCore at /Users/joshualiu/.julia/packages/OrdinaryDiffEqCore/TbC1J/src/integrators/controllers.jl:404 overwritten in module OrdinaryDiffEqFIRK at /Users/joshualiu/.julia/packages/OrdinaryDiffEqFIRK/f9ugT/src/controllers.jl:1.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
  ? OrdinaryDiffEqFIRK
  ? OrdinaryDiffEq
[ Info: Precompiling OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] (cache misses: dep missing source (2))
WARNING: Method definition stepsize_controller!(Any, OrdinaryDiffEqCore.PredictiveController, Any) in module OrdinaryDiffEqCore at /Users/joshualiu/.julia/packages/OrdinaryDiffEqCore/TbC1J/src/integrators/controllers.jl:404 overwritten in module OrdinaryDiffEqFIRK at /Users/joshualiu/.julia/packages/OrdinaryDiffEqFIRK/f9ugT/src/controllers.jl:1.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
┌ Info: Skipping precompilation due to precompilable error. Importing OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed].
└   exception = Error when precompiling module, potentially caused by a __precompile__(false) declaration in the module.
Precompiling OrdinaryDiffEqFIRK...
Info Given OrdinaryDiffEqFIRK was explicitly requested, output will be shown live 
WARNING: Method definition stepsize_controller!(Any, OrdinaryDiffEqCore.PredictiveController, Any) in module OrdinaryDiffEqCore at /Users/joshualiu/.julia/packages/OrdinaryDiffEqCore/TbC1J/src/integrators/controllers.jl:404 overwritten in module OrdinaryDiffEqFIRK at /Users/joshualiu/.julia/packages/OrdinaryDiffEqFIRK/f9ugT/src/controllers.jl:1.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
  ? OrdinaryDiffEqFIRK
[ Info: Precompiling OrdinaryDiffEqFIRK [5960d6e9-dd7a-4743-88e7-cf307b64f125] (cache misses: dep missing source (2))
WARNING: Method definition stepsize_controller!(Any, OrdinaryDiffEqCore.PredictiveController, Any) in module OrdinaryDiffEqCore at /Users/joshualiu/.julia/packages/OrdinaryDiffEqCore/TbC1J/src/integrators/controllers.jl:404 overwritten in module OrdinaryDiffEqFIRK at /Users/joshualiu/.julia/packages/OrdinaryDiffEqFIRK/f9ugT/src/controllers.jl:1.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
┌ Info: Skipping precompilation due to precompilable error. Importing OrdinaryDiffEqFIRK [5960d6e9-dd7a-4743-88e7-cf307b64f125].
└   exception = Error when precompiling module, potentially caused by a __precompile__(false) declaration in the module.

Environment (please complete the following information):

  • Output of using Pkg; Pkg.status()
Status `~/Desktop/RuptoblastRegulation/Project.toml`
  [6e4b80f9] BenchmarkTools v1.5.0
  [13f3f980] CairoMakie v0.12.16
  [0c46a032] DifferentialEquations v7.15.0
  [61744808] DynamicalSystems v3.3.26
  [7073ff75] IJulia v1.26.0
  [1dea7af3] OrdinaryDiffEq v6.90.1
  • Output of using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
Very long output ```julia Status `~/Desktop/RuptoblastRegulation/Manifest.toml` [47edcb42] ADTypes v1.10.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.38 [79e6a3ab] Adapt v4.1.1 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.1 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.17.0 [4c555306] ArrayLayouts v1.10.4 [f3fd9213] Attractors v1.23.1 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [aae01518] BandedMatrices v1.7.5 [6e4b80f9] BenchmarkTools v1.5.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [a134a8b2] BlackBoxOptim v0.6.3 [764a87c0] BoundaryValueDiffEq v5.12.0 [56b672f2] BoundaryValueDiffEqCore v1.0.2 [85d9eb09] BoundaryValueDiffEqFIRK v1.0.2 [1a22d4ce] BoundaryValueDiffEqMIRK v1.0.1 [ed55bfe0] BoundaryValueDiffEqShooting v1.0.2 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [a9c8d775] CPUTime v1.0.0 [96374032] CRlibm v1.0.1 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.12.16 [49dc2e85] Calculus v0.5.2 [d360d2e6] ChainRulesCore v1.25.0 [608a59af] ChaosTools v3.2.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.7 [a2cac450] ColorBrewer v0.4.0 [35d6a980] ColorSchemes v3.27.1 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [ab4b797d] ComplexityMeasures v3.7.2 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [8f4d0f93] Conda v1.10.2 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.1 [bcd4f6db] DelayDiffEq v5.49.0 [5732040d] DelayEmbeddings v2.8.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.160.0 [459566f4] DiffEqCallbacks v4.2.0 [77a26b50] DiffEqNoiseProcess v5.23.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [0c46a032] DifferentialEquations v7.15.0 [a0c0ee7d] DifferentiationInterface v0.6.22 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.113 [ffbed154] DocStringExtensions v0.9.3 [61744808] DynamicalSystems v3.3.26 [6e36e845] DynamicalSystemsBase v3.12.0 [4e289a0a] EnumX v1.0.4 [f151be2c] EnzymeCore v0.8.6 [90fa49ef] ErrorfreeArithmetic v0.5.2 ⌃ [429591f6] ExactPredicates v2.2.5 [d4d017d3] ExponentialUtilities v1.26.1 [e2ba6199] ExprTools v0.1.10 ⌅ [6b7a57c9] Expronicon v0.8.5 [411431e0] Extents v0.1.4 [7a1cc6ca] FFTW v1.8.0 [9d29842c] FastAlmostBandedMatrices v0.1.4 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [29a986be] FastLapackInterface v2.0.4 [a4df4552] FastPower v1.1.1 [fa42c844] FastRounding v0.3.1 [5789e2e9] FileIO v1.16.5 [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.22 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.26.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v0.10.38 [4665ce21] FractalDimensions v1.9.1 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.5 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.1 ⌅ [46192b85] GPUArraysCore v0.1.6 [c145ed77] GenericSchur v0.5.4 [68eda718] GeoFormatTypes v0.4.2 [cf35fbd7] GeoInterface v1.3.8 [5c1252a2] GeometryBasics v0.4.11 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.12.0 [3955a311] GridLayoutBase v0.11.0 [42e2da0e] Grisu v1.0.2 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.25 [09f84164] HypothesisTests v0.11.3 [7073ff75] IJulia v1.26.0 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [a98d9a8b] Interpolations v0.15.1 ⌅ [d1acc4aa] IntervalArithmetic v0.20.9 ⌅ [d2bf35a9] IntervalRootFinding v0.5.11 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.2 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.6.1 [682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.5 [ccbc3e58] JumpProcesses v9.14.0 [ef3ab10e] KLU v0.6.0 [5ab0869b] KernelDensity v0.6.9 [ba0b0d4f] Krylov v0.9.8 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.2.2 [8cdb02fc] LazyModules v0.3.1 [2d8b4e74] LevyArea v1.0.0 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.3.0 [7ed4a6bd] LinearSolve v2.37.0 [2ab3a3ac] LogExpFunctions v0.3.28 [fc60dff9] LombScargle v1.0.3 [bdcacae8] LoopVectorization v0.12.171 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.13 [ee78f7c6] Makie v0.21.16 [20f20a25] MakieCore v0.8.10 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.2 [299715c1] MarchingCubes v0.1.10 [0a4f8689] MathTeXEngine v0.6.2 [a3b82374] MatrixFactorizations v3.0.1 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [eff96d63] Measurements v2.11.0 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.8.3 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.0.2 [b8a86587] NearestNeighbors v0.4.21 [645ca80c] Neighborhood v0.2.4 [f09324ee] Netpbm v1.1.1 ⌅ [8913a72c] NonlinearSolve v3.15.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.14.1 [52e1d378] OpenEXR v0.3.3 [429524aa] Optim v1.10.0 [bac558e1] OrderedCollections v1.6.3 [1dea7af3] OrdinaryDiffEq v6.90.1 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.1.0 [6ad6398a] OrdinaryDiffEqBDF v1.1.2 [bbf590c4] OrdinaryDiffEqCore v1.10.2 [50262376] OrdinaryDiffEqDefault v1.1.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.2.0 [9286f039] OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] OrdinaryDiffEqExponentialRK v1.1.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.2.1 ⌃ [5960d6e9] OrdinaryDiffEqFIRK v1.1.1 [101fe9f7] OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.1.0 [521117fe] OrdinaryDiffEqLinear v1.1.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.2.1 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.2.4 [c9986a66] OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.1.0 [5b33eab2] OrdinaryDiffEqPRK v1.1.0 [04162be5] OrdinaryDiffEqQPRK v1.1.0 [af6ede74] OrdinaryDiffEqRKN v1.1.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.3.1 [2d112036] OrdinaryDiffEqSDIRK v1.1.0 [669c94d9] OrdinaryDiffEqSSPRK v1.2.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.1.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.1.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.1.0 [b1df2697] OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] OrdinaryDiffEqVerner v1.1.1 [90014a1f] PDMats v0.11.31 [f57f5aa1] PNGFiles v0.4.3 [65ce6f38] PackageExtensionCompat v1.0.2 [19eb6ba3] Packing v0.5.0 [5432bcbf] PaddedViews v0.5.12 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.3 [e409e4f3] PoissonRandom v0.4.4 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [647866c9] PolygonOps v0.1.2 ⌅ [f27b6e38] Polynomials v3.2.4 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.24 [aea7be01] PrecompileTools v1.2.1 [31e2f376] PredefinedDynamicalSystems v1.2.0 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.2.1 [4b34888f] QOI v1.0.1 [1fd47b50] QuadGK v2.11.1 [74087812] Random123 v1.7.0 [e6cf234a] RandomNumbers v1.6.0 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [639c3291] RecurrenceAnalysis v2.1.0 [731186ca] RecursiveArrayTools v3.27.3 [f2c3362d] RecursiveFactorization v0.2.23 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.0 [ae5879a3] ResettableStacks v1.1.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.1 [5eaf0fd0] RoundingEmulator v0.2.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [fdea26ae] SIMD v3.7.0 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [0bca4576] SciMLBase v2.61.0 [19f34311] SciMLJacobianOperators v0.1.1 [c0aeaf25] SciMLOperators v0.3.12 [53ae85a6] SciMLStructures v1.5.0 [6c6a2e73] Scratch v1.2.1 [3cc68bcd] SetRounding v0.2.1 [efcf1570] Setfield v1.1.1 [65257c39] ShaderAbstractions v0.4.1 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 ⌅ [727e6d20] SimpleNonlinearSolve v1.12.3 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [45858cf5] Sixel v0.1.3 [b85f4697] SoftGlobalScope v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [9f842d2f] SparseConnectivityTracer v0.6.8 [47a9eef4] SparseDiffTools v2.23.0 [0a514795] SparseMatrixColorings v0.4.10 [e56a9233] Sparspak v0.3.9 [d4ead438] SpatialIndexing v0.1.6 [276daf66] SpecialFunctions v2.4.0 [860ef19b] StableRNGs v1.0.2 [cae243ae] StackViews v0.1.1 [40b095a5] StateSpaceSets v2.3.0 [aedffcd0] Static v1.1.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.8 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.3 [4c63d2b9] StatsFuns v1.3.2 [9672c7b4] SteadyStateDiffEq v2.4.1 [789caeaf] StochasticDiffEq v6.71.0 [7792a7ef] StrideArraysCore v0.5.7 [09ab397b] StructArrays v0.6.18 [c3572dad] Sundials v4.26.1 [2efcf032] SymbolicIndexingInterface v0.3.35 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [8290d209] ThreadingUtilities v0.5.2 [731e570b] TiffImages v0.11.1 [a759f4b9] TimerOutputs v0.5.25 [c804724b] TimeseriesSurrogates v2.7.2 [3bb67fe8] TranscodingStreams v0.11.3 [d5829a12] TriangularSolve v0.2.1 [981d1d27] TriplotBase v0.1.0 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [b8865327] UnicodePlots v3.7.1 [1986cc42] Unitful v1.21.0 [3d5dd08c] VectorizationBase v0.21.71 [81def892] VersionParsing v1.3.0 [19fa3120] VertexSafeGraphs v0.2.0 [29a6e085] Wavelets v0.10.0 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.0.0 [c2297ded] ZMQ v1.3.0 [6e34b625] Bzip2_jll v1.0.8+2 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.2+1 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.6.4+0 [b22a6f82] FFMPEG_jll v6.1.2+0 [f5851436] FFTW_jll v3.3.10+1 [a3f928ae] Fontconfig_jll v2.13.96+0 [d7e528f0] FreeType2_jll v2.13.2+0 [559328eb] FriBidi_jll v1.0.14+0 [78b55507] Gettext_jll v0.21.0+0 [59f7168a] Giflib_jll v5.2.2+0 [7746bdde] Glib_jll v2.80.5+0 [3b182d85] Graphite2_jll v1.3.14+0 [2e76f6c2] HarfBuzz_jll v8.3.1+0 [905a6f67] Imath_jll v3.1.11+0 [1d5cc7b8] IntelOpenMP_jll v2024.2.1+0 [aacddb02] JpegTurbo_jll v3.0.4+0 [c1c5ebd0] LAME_jll v3.100.2+0 [88015f11] LERC_jll v4.0.0+0 [1d63c593] LLVMOpenMP_jll v18.1.7+0 [dd4b983a] LZO_jll v2.10.2+1 ⌅ [e9f186c6] Libffi_jll v3.2.2+1 [d4300ac3] Libgcrypt_jll v1.11.0+0 [7e76a0d4] Libglvnd_jll v1.6.0+0 [7add5ba3] Libgpg_error_jll v1.50.0+0 [94ce4f54] Libiconv_jll v1.17.0+1 [4b2f31a3] Libmount_jll v2.40.1+0 [89763e89] Libtiff_jll v4.7.0+0 [38a345b3] Libuuid_jll v2.40.1+0 [856f044c] MKL_jll v2024.2.0+0 [e7412a2a] Ogg_jll v1.3.5+1 [18a262bb] OpenEXR_jll v3.2.4+0 [458c3c95] OpenSSL_jll v3.0.15+1 [efe28fd5] OpenSpecFun_jll v0.5.5+0 [91d4177d] Opus_jll v1.3.3+0 [36c8627f] Pango_jll v1.54.1+0 [30392449] Pixman_jll v0.43.4+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [fb77eaff] Sundials_jll v5.2.3+0 [02c8fc9c] XML2_jll v2.13.5+0 [aed1982a] XSLT_jll v1.1.41+0 [ffd25f8a] XZ_jll v5.6.3+0 [4f6342f7] Xorg_libX11_jll v1.8.6+0 [0c0b7dd1] Xorg_libXau_jll v1.0.11+0 [a3789734] Xorg_libXdmcp_jll v1.1.4+0 [1082639a] Xorg_libXext_jll v1.3.6+0 [ea2f1a96] Xorg_libXrender_jll v0.9.11+0 [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0 [c7cfdc94] Xorg_libxcb_jll v1.17.0+0 [c5fb5394] Xorg_xtrans_jll v1.5.0+0 [8f1865be] ZeroMQ_jll v4.3.5+1 [3161d3a3] Zstd_jll v1.5.6+1 [9a68df92] isoband_jll v0.2.3+0 [a4ae2306] libaom_jll v3.9.0+0 [0ac62f75] libass_jll v0.15.2+0 [f638f0a6] libfdk_aac_jll v2.0.3+0 [b53b4c65] libpng_jll v1.6.44+0 [075b6546] libsixel_jll v1.10.3+1 [a9144af2] libsodium_jll v1.0.20+1 [f27f6e37] libvorbis_jll v1.3.7+2 [c5f90fcd] libwebp_jll v1.4.0+0 [1317d2d5] oneTBB_jll v2021.12.0+0 [1270edf5] x264_jll v10164.0.0+0 ⌅ [dfaa095f] x265_jll v3.6.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.1+2 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` ```
- Output of `versioninfo()` 
Julia Version 1.11.1
Commit 8f5b7ca12ad (2024-10-16 10:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: macOS (arm64-apple-darwin22.4.0)
  CPU: 8 × Apple M1
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, apple-m1)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)
@cjoshliu cjoshliu added the bug label Nov 16, 2024
@ChrisRackauckas
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What version of OrdinaryDiffEqFIRK? Share st -m.

@cjoshliu
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It's OrdinaryDiffEqFIRK v1.1.1. Here is the st -m output. There is a green arrow next to OrdinaryDiffEqFIRK, but when I using Pkg; Pkg.update("OrdinaryDiffEqFIRK"), that neither changes Manifest.toml nor fixes the issue.

Status `~/Desktop/RuptoblastRegulation/Manifest.toml`
  [47edcb42] ADTypes v1.10.0
  [621f4979] AbstractFFTs v1.5.0
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.38
  [79e6a3ab] Adapt v4.1.1
  [35492f91] AdaptivePredicates v1.2.0
  [66dad0bd] AliasTables v1.1.3
  [27a7e980] Animations v0.4.1
  [ec485272] ArnoldiMethod v0.4.0
  [4fba245c] ArrayInterface v7.17.0
  [4c555306] ArrayLayouts v1.10.4
  [f3fd9213] Attractors v1.23.1
  [67c07d97] Automa v1.1.0
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.7
  [aae01518] BandedMatrices v1.7.5
  [6e4b80f9] BenchmarkTools v1.5.0
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [a134a8b2] BlackBoxOptim v0.6.3
  [764a87c0] BoundaryValueDiffEq v5.12.0
  [56b672f2] BoundaryValueDiffEqCore v1.0.2
  [85d9eb09] BoundaryValueDiffEqFIRK v1.0.2
  [1a22d4ce] BoundaryValueDiffEqMIRK v1.0.1
  [ed55bfe0] BoundaryValueDiffEqShooting v1.0.2
  [fa961155] CEnum v0.5.0
  [2a0fbf3d] CPUSummary v0.2.6
  [a9c8d775] CPUTime v1.0.0
  [96374032] CRlibm v1.0.1
  [159f3aea] Cairo v1.1.1
  [13f3f980] CairoMakie v0.12.16
  [49dc2e85] Calculus v0.5.2
  [d360d2e6] ChainRulesCore v1.25.0
  [608a59af] ChaosTools v3.2.1
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [aaaa29a8] Clustering v0.15.7
  [a2cac450] ColorBrewer v0.4.0
  [35d6a980] ColorSchemes v3.27.1
⌅ [3da002f7] ColorTypes v0.11.5
⌃ [c3611d14] ColorVectorSpace v0.10.0
⌅ [5ae59095] Colors v0.12.11
  [861a8166] Combinatorics v1.0.2
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.1
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.16.0
  [ab4b797d] ComplexityMeasures v3.7.2
  [a33af91c] CompositionsBase v0.1.2
  [2569d6c7] ConcreteStructs v0.2.3
  [8f4d0f93] Conda v1.10.2
  [187b0558] ConstructionBase v1.5.8
  [d38c429a] Contour v0.6.3
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [717857b8] DSP v0.7.10
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.20
  [e2d170a0] DataValueInterfaces v1.0.0
  [927a84f5] DelaunayTriangulation v1.6.1
  [bcd4f6db] DelayDiffEq v5.49.0
  [5732040d] DelayEmbeddings v2.8.0
  [8bb1440f] DelimitedFiles v1.9.1
  [2b5f629d] DiffEqBase v6.160.0
  [459566f4] DiffEqCallbacks v4.2.0
  [77a26b50] DiffEqNoiseProcess v5.23.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [0c46a032] DifferentialEquations v7.15.0
  [a0c0ee7d] DifferentiationInterface v0.6.22
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.113
  [ffbed154] DocStringExtensions v0.9.3
  [61744808] DynamicalSystems v3.3.26
  [6e36e845] DynamicalSystemsBase v3.12.0
  [4e289a0a] EnumX v1.0.4
  [f151be2c] EnzymeCore v0.8.6
  [90fa49ef] ErrorfreeArithmetic v0.5.2
⌃ [429591f6] ExactPredicates v2.2.5
  [d4d017d3] ExponentialUtilities v1.26.1
  [e2ba6199] ExprTools v0.1.10
⌅ [6b7a57c9] Expronicon v0.8.5
  [411431e0] Extents v0.1.4
  [7a1cc6ca] FFTW v1.8.0
  [9d29842c] FastAlmostBandedMatrices v0.1.4
  [7034ab61] FastBroadcast v0.3.5
  [9aa1b823] FastClosures v0.3.2
  [29a986be] FastLapackInterface v2.0.4
  [a4df4552] FastPower v1.1.1
  [fa42c844] FastRounding v0.3.1
  [5789e2e9] FileIO v1.16.5
  [8fc22ac5] FilePaths v0.8.3
  [48062228] FilePathsBase v0.9.22
  [1a297f60] FillArrays v1.13.0
  [6a86dc24] FiniteDiff v2.26.0
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
  [f6369f11] ForwardDiff v0.10.38
  [4665ce21] FractalDimensions v1.9.1
  [b38be410] FreeType v4.1.1
  [663a7486] FreeTypeAbstraction v0.10.5
  [069b7b12] FunctionWrappers v1.1.3
  [77dc65aa] FunctionWrappersWrappers v0.1.3
  [d9f16b24] Functors v0.5.1
⌅ [46192b85] GPUArraysCore v0.1.6
  [c145ed77] GenericSchur v0.5.4
  [68eda718] GeoFormatTypes v0.4.2
  [cf35fbd7] GeoInterface v1.3.8
  [5c1252a2] GeometryBasics v0.4.11
  [a2bd30eb] Graphics v1.1.3
  [86223c79] Graphs v1.12.0
  [3955a311] GridLayoutBase v0.11.0
  [42e2da0e] Grisu v1.0.2
  [3e5b6fbb] HostCPUFeatures v0.1.17
  [34004b35] HypergeometricFunctions v0.3.25
  [09f84164] HypothesisTests v0.11.3
  [7073ff75] IJulia v1.26.0
  [615f187c] IfElse v0.1.1
  [2803e5a7] ImageAxes v0.6.12
  [c817782e] ImageBase v0.1.7
  [a09fc81d] ImageCore v0.10.5
  [82e4d734] ImageIO v0.6.9
  [bc367c6b] ImageMetadata v0.9.10
  [9b13fd28] IndirectArrays v1.0.0
  [d25df0c9] Inflate v0.1.5
  [a98d9a8b] Interpolations v0.15.1
⌅ [d1acc4aa] IntervalArithmetic v0.20.9
⌅ [d2bf35a9] IntervalRootFinding v0.5.11
  [8197267c] IntervalSets v0.7.10
  [3587e190] InverseFunctions v0.1.17
  [92d709cd] IrrationalConstants v0.2.2
  [f1662d9f] Isoband v0.1.1
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.6.1
  [682c06a0] JSON v0.21.4
  [b835a17e] JpegTurbo v0.1.5
  [ccbc3e58] JumpProcesses v9.14.0
  [ef3ab10e] KLU v0.6.0
  [5ab0869b] KernelDensity v0.6.9
  [ba0b0d4f] Krylov v0.9.8
  [b964fa9f] LaTeXStrings v1.4.0
  [10f19ff3] LayoutPointers v0.1.17
  [5078a376] LazyArrays v2.2.2
  [8cdb02fc] LazyModules v0.3.1
  [2d8b4e74] LevyArea v1.0.0
  [87fe0de2] LineSearch v0.1.4
  [d3d80556] LineSearches v7.3.0
  [7ed4a6bd] LinearSolve v2.37.0
  [2ab3a3ac] LogExpFunctions v0.3.28
  [fc60dff9] LombScargle v1.0.3
  [bdcacae8] LoopVectorization v0.12.171
  [d8e11817] MLStyle v0.4.17
  [1914dd2f] MacroTools v0.5.13
  [ee78f7c6] Makie v0.21.16
  [20f20a25] MakieCore v0.8.10
  [d125e4d3] ManualMemory v0.1.8
  [dbb5928d] MappedArrays v0.4.2
  [299715c1] MarchingCubes v0.1.10
  [0a4f8689] MathTeXEngine v0.6.2
  [a3b82374] MatrixFactorizations v3.0.1
  [bb5d69b7] MaybeInplace v0.1.4
  [739be429] MbedTLS v1.1.9
  [eff96d63] Measurements v2.11.0
  [e1d29d7a] Missings v1.2.0
  [e94cdb99] MosaicViews v0.3.4
  [46d2c3a1] MuladdMacro v0.2.4
  [d41bc354] NLSolversBase v7.8.3
  [2774e3e8] NLsolve v4.5.1
  [77ba4419] NaNMath v1.0.2
  [b8a86587] NearestNeighbors v0.4.21
  [645ca80c] Neighborhood v0.2.4
  [f09324ee] Netpbm v1.1.1
⌅ [8913a72c] NonlinearSolve v3.15.1
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.14.1
  [52e1d378] OpenEXR v0.3.3
  [429524aa] Optim v1.10.0
  [bac558e1] OrderedCollections v1.6.3
  [1dea7af3] OrdinaryDiffEq v6.90.1
  [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.1.0
  [6ad6398a] OrdinaryDiffEqBDF v1.1.2
  [bbf590c4] OrdinaryDiffEqCore v1.10.2
  [50262376] OrdinaryDiffEqDefault v1.1.0
  [4302a76b] OrdinaryDiffEqDifferentiation v1.2.0
  [9286f039] OrdinaryDiffEqExplicitRK v1.1.0
  [e0540318] OrdinaryDiffEqExponentialRK v1.1.0
  [becaefa8] OrdinaryDiffEqExtrapolation v1.2.1
⌃ [5960d6e9] OrdinaryDiffEqFIRK v1.1.1
  [101fe9f7] OrdinaryDiffEqFeagin v1.1.0
  [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1
  [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0
  [9f002381] OrdinaryDiffEqIMEXMultistep v1.1.0
  [521117fe] OrdinaryDiffEqLinear v1.1.0
  [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0
  [b0944070] OrdinaryDiffEqLowStorageRK v1.2.1
  [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.2.4
  [c9986a66] OrdinaryDiffEqNordsieck v1.1.0
  [5dd0a6cf] OrdinaryDiffEqPDIRK v1.1.0
  [5b33eab2] OrdinaryDiffEqPRK v1.1.0
  [04162be5] OrdinaryDiffEqQPRK v1.1.0
  [af6ede74] OrdinaryDiffEqRKN v1.1.0
  [43230ef6] OrdinaryDiffEqRosenbrock v1.3.1
  [2d112036] OrdinaryDiffEqSDIRK v1.1.0
  [669c94d9] OrdinaryDiffEqSSPRK v1.2.0
  [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.1.0
  [358294b1] OrdinaryDiffEqStabilizedRK v1.1.0
  [fa646aed] OrdinaryDiffEqSymplecticRK v1.1.0
  [b1df2697] OrdinaryDiffEqTsit5 v1.1.0
  [79d7bb75] OrdinaryDiffEqVerner v1.1.1
  [90014a1f] PDMats v0.11.31
  [f57f5aa1] PNGFiles v0.4.3
  [65ce6f38] PackageExtensionCompat v1.0.2
  [19eb6ba3] Packing v0.5.0
  [5432bcbf] PaddedViews v0.5.12
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.1
  [eebad327] PkgVersion v0.3.3
  [995b91a9] PlotUtils v1.4.3
  [e409e4f3] PoissonRandom v0.4.4
  [f517fe37] Polyester v0.7.16
  [1d0040c9] PolyesterWeave v0.2.2
  [647866c9] PolygonOps v0.1.2
⌅ [f27b6e38] Polynomials v3.2.4
  [85a6dd25] PositiveFactorizations v0.2.4
  [d236fae5] PreallocationTools v0.4.24
  [aea7be01] PrecompileTools v1.2.1
  [31e2f376] PredefinedDynamicalSystems v1.2.0
  [21216c6a] Preferences v1.4.3
  [92933f4c] ProgressMeter v1.10.2
  [43287f4e] PtrArrays v1.2.1
  [4b34888f] QOI v1.0.1
  [1fd47b50] QuadGK v2.11.1
  [74087812] Random123 v1.7.0
  [e6cf234a] RandomNumbers v1.6.0
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [3cdcf5f2] RecipesBase v1.3.4
  [639c3291] RecurrenceAnalysis v2.1.0
  [731186ca] RecursiveArrayTools v3.27.3
  [f2c3362d] RecursiveFactorization v0.2.23
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.0
  [ae5879a3] ResettableStacks v1.1.1
  [79098fc4] Rmath v0.8.0
  [f2b01f46] Roots v2.2.1
  [5eaf0fd0] RoundingEmulator v0.2.1
  [7e49a35a] RuntimeGeneratedFunctions v0.5.13
  [fdea26ae] SIMD v3.7.0
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [0bca4576] SciMLBase v2.61.0
  [19f34311] SciMLJacobianOperators v0.1.1
  [c0aeaf25] SciMLOperators v0.3.12
  [53ae85a6] SciMLStructures v1.5.0
  [6c6a2e73] Scratch v1.2.1
  [3cc68bcd] SetRounding v0.2.1
  [efcf1570] Setfield v1.1.1
  [65257c39] ShaderAbstractions v0.4.1
  [992d4aef] Showoff v1.0.3
  [73760f76] SignedDistanceFields v0.4.0
⌅ [727e6d20] SimpleNonlinearSolve v1.12.3
  [699a6c99] SimpleTraits v0.9.4
  [ce78b400] SimpleUnPack v1.1.0
  [45858cf5] Sixel v0.1.3
  [b85f4697] SoftGlobalScope v1.1.0
  [a2af1166] SortingAlgorithms v1.2.1
  [9f842d2f] SparseConnectivityTracer v0.6.8
  [47a9eef4] SparseDiffTools v2.23.0
  [0a514795] SparseMatrixColorings v0.4.10
  [e56a9233] Sparspak v0.3.9
  [d4ead438] SpatialIndexing v0.1.6
  [276daf66] SpecialFunctions v2.4.0
  [860ef19b] StableRNGs v1.0.2
  [cae243ae] StackViews v0.1.1
  [40b095a5] StateSpaceSets v2.3.0
  [aedffcd0] Static v1.1.1
  [0d7ed370] StaticArrayInterface v1.8.0
  [90137ffa] StaticArrays v1.9.8
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.3
  [4c63d2b9] StatsFuns v1.3.2
  [9672c7b4] SteadyStateDiffEq v2.4.1
  [789caeaf] StochasticDiffEq v6.71.0
  [7792a7ef] StrideArraysCore v0.5.7
  [09ab397b] StructArrays v0.6.18
  [c3572dad] Sundials v4.26.1
  [2efcf032] SymbolicIndexingInterface v0.3.35
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [62fd8b95] TensorCore v0.1.1
  [8290d209] ThreadingUtilities v0.5.2
  [731e570b] TiffImages v0.11.1
  [a759f4b9] TimerOutputs v0.5.25
  [c804724b] TimeseriesSurrogates v2.7.2
  [3bb67fe8] TranscodingStreams v0.11.3
  [d5829a12] TriangularSolve v0.2.1
  [981d1d27] TriplotBase v0.1.0
  [781d530d] TruncatedStacktraces v1.4.0
  [3a884ed6] UnPack v1.0.2
  [1cfade01] UnicodeFun v0.4.1
  [b8865327] UnicodePlots v3.7.1
  [1986cc42] Unitful v1.21.0
  [3d5dd08c] VectorizationBase v0.21.71
  [81def892] VersionParsing v1.3.0
  [19fa3120] VertexSafeGraphs v0.2.0
  [29a6e085] Wavelets v0.10.0
  [e3aaa7dc] WebP v0.1.3
  [efce3f68] WoodburyMatrices v1.0.0
  [c2297ded] ZMQ v1.3.0
  [6e34b625] Bzip2_jll v1.0.8+2
  [4e9b3aee] CRlibm_jll v1.0.1+0
  [83423d85] Cairo_jll v1.18.2+1
  [5ae413db] EarCut_jll v2.2.4+0
  [2e619515] Expat_jll v2.6.4+0
  [b22a6f82] FFMPEG_jll v6.1.2+0
  [f5851436] FFTW_jll v3.3.10+1
  [a3f928ae] Fontconfig_jll v2.13.96+0
  [d7e528f0] FreeType2_jll v2.13.2+0
  [559328eb] FriBidi_jll v1.0.14+0
  [78b55507] Gettext_jll v0.21.0+0
  [59f7168a] Giflib_jll v5.2.2+0
  [7746bdde] Glib_jll v2.80.5+0
  [3b182d85] Graphite2_jll v1.3.14+0
  [2e76f6c2] HarfBuzz_jll v8.3.1+0
  [905a6f67] Imath_jll v3.1.11+0
  [1d5cc7b8] IntelOpenMP_jll v2024.2.1+0
  [aacddb02] JpegTurbo_jll v3.0.4+0
  [c1c5ebd0] LAME_jll v3.100.2+0
  [88015f11] LERC_jll v4.0.0+0
  [1d63c593] LLVMOpenMP_jll v18.1.7+0
  [dd4b983a] LZO_jll v2.10.2+1
⌅ [e9f186c6] Libffi_jll v3.2.2+1
  [d4300ac3] Libgcrypt_jll v1.11.0+0
  [7e76a0d4] Libglvnd_jll v1.6.0+0
  [7add5ba3] Libgpg_error_jll v1.50.0+0
  [94ce4f54] Libiconv_jll v1.17.0+1
  [4b2f31a3] Libmount_jll v2.40.1+0
  [89763e89] Libtiff_jll v4.7.0+0
  [38a345b3] Libuuid_jll v2.40.1+0
  [856f044c] MKL_jll v2024.2.0+0
  [e7412a2a] Ogg_jll v1.3.5+1
  [18a262bb] OpenEXR_jll v3.2.4+0
  [458c3c95] OpenSSL_jll v3.0.15+1
  [efe28fd5] OpenSpecFun_jll v0.5.5+0
  [91d4177d] Opus_jll v1.3.3+0
  [36c8627f] Pango_jll v1.54.1+0
  [30392449] Pixman_jll v0.43.4+0
  [f50d1b31] Rmath_jll v0.5.1+0
⌅ [fb77eaff] Sundials_jll v5.2.3+0
  [02c8fc9c] XML2_jll v2.13.5+0
  [aed1982a] XSLT_jll v1.1.41+0
  [ffd25f8a] XZ_jll v5.6.3+0
  [4f6342f7] Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.11+0
  [a3789734] Xorg_libXdmcp_jll v1.1.4+0
  [1082639a] Xorg_libXext_jll v1.3.6+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.11+0
  [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.0+0
  [c5fb5394] Xorg_xtrans_jll v1.5.0+0
  [8f1865be] ZeroMQ_jll v4.3.5+1
  [3161d3a3] Zstd_jll v1.5.6+1
  [9a68df92] isoband_jll v0.2.3+0
  [a4ae2306] libaom_jll v3.9.0+0
  [0ac62f75] libass_jll v0.15.2+0
  [f638f0a6] libfdk_aac_jll v2.0.3+0
  [b53b4c65] libpng_jll v1.6.44+0
  [075b6546] libsixel_jll v1.10.3+1
  [a9144af2] libsodium_jll v1.0.20+1
  [f27f6e37] libvorbis_jll v1.3.7+2
  [c5f90fcd] libwebp_jll v1.4.0+0
  [1317d2d5] oneTBB_jll v2021.12.0+0
  [1270edf5] x264_jll v10164.0.0+0
⌅ [dfaa095f] x265_jll v3.6.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [8bf52ea8] CRC32c v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.1+2
  [efcefdf7] PCRE2_jll v10.42.0+1
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

@ChrisRackauckas
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What if you ]add [email protected]?

@cjoshliu
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I get the following error:

(RuptoblastRegulation) pkg> add OrdinaryDiffEqFIRK@1.3
   Resolving package versions...
ERROR: Unsatisfiable requirements detected for package SpecialFunctions [276daf66]:
 SpecialFunctions [276daf66] log:
 ├─possible versions are: 0.7.0 - 2.4.0 or uninstalled
 ├─restricted by compatibility requirements with LogExpFunctions [2ab3a3ac] to versions: [0.7.0 - 1.3.0, 1.6.1 - 2.4.0] or uninstalled, leaving only versions: [0.7.0 - 1.3.0, 1.6.1 - 2.4.0]
 │ └─LogExpFunctions [2ab3a3ac] log:
 │   ├─possible versions are: 0.2.0 - 0.3.28 or uninstalled
 │   ├─restricted by compatibility requirements with DocStringExtensions [ffbed154] to versions: 0.3.16 - 0.3.28 or uninstalled
 │   │ └─DocStringExtensions [ffbed154] log:
 │   │   ├─possible versions are: 0.4.6 - 0.9.3 or uninstalled
 │   │   ├─restricted by compatibility requirements with RecursiveArrayTools [731186ca] to versions: 0.9.0 - 0.9.3
 │   │   │ └─RecursiveArrayTools [731186ca] log:
 │   │   │   ├─possible versions are: 0.16.0 - 3.27.3 or uninstalled
 │   │   │   └─restricted by compatibility requirements with OrdinaryDiffEqFIRK [5960d6e9] to versions: 3.27.0 - 3.27.3
 │   │   │     └─OrdinaryDiffEqFIRK [5960d6e9] log:
 │   │   │       ├─possible versions are: 1.1.0 - 1.3.0 or uninstalled
 │   │   │       └─restricted to versions 1.3 by an explicit requirement, leaving only versions: 1.3.0
 │   │   └─restricted by compatibility requirements with LinearSolve [7ed4a6bd] to versions: 0.9.3
 │   │     └─LinearSolve [7ed4a6bd] log:
 │   │       ├─possible versions are: 0.1.0 - 2.37.0 or uninstalled
 │   │       └─restricted by compatibility requirements with OrdinaryDiffEqFIRK [5960d6e9] to versions: 2.32.0 - 2.37.0
 │   │         └─OrdinaryDiffEqFIRK [5960d6e9] log: see above
 │   └─restricted by compatibility requirements with Symbolics [0c5d862f] to versions: 0.3.0 - 0.3.28, leaving only versions: 0.3.16 - 0.3.28
 │     └─Symbolics [0c5d862f] log:
 │       ├─possible versions are: 0.1.0 - 6.20.0 or uninstalled
 │       └─restricted by compatibility requirements with OrdinaryDiffEqFIRK [5960d6e9] to versions: 6.15.3 - 6.20.0
 │         └─OrdinaryDiffEqFIRK [5960d6e9] log: see above
 ├─restricted by compatibility requirements with LevyArea [2d8b4e74] to versions: 1.0.0 - 2.4.0, leaving only versions: [1.0.0 - 1.3.0, 1.6.1 - 2.4.0]
 │ └─LevyArea [2d8b4e74] log:
 │   ├─possible versions are: 1.0.0 or uninstalled
 ├─restricted by compatibility requirements with Symbolics [0c5d862f] to versions: 2.0.0 - 2.4.0
 │ └─Symbolics [0c5d862f] log: see above
 └─restricted by compatibility requirements with ChaosTools [608a59af] to versions: 0.10.0 - 1.8.8 — no versions left
   └─ChaosTools [608a59af] log:
     ├─possible versions are: 0.12.0 - 3.2.1 or uninstalled
     ├─restricted by compatibility requirements with DynamicalSystems [61744808] to versions: 1.0.0 - 3.2.1
     │ └─DynamicalSystems [61744808] log:
     │   ├─possible versions are: 1.0.0 - 3.3.26 or uninstalled
     │   ├─restricted to versions * by project [7a91350a], leaving only versions: 1.0.0 - 3.3.26
     │   │ └─project [7a91350a] log:
     │   │   ├─possible versions are: 0.0.0 or uninstalled
     │   │   └─project [7a91350a] is fixed to version 0.0.0
     │   ├─restricted by compatibility requirements with Reexport [189a3867] to versions: 1.7.2 - 3.3.26 or uninstalled, leaving only versions: 1.7.2 - 3.3.26
     │   │ └─Reexport [189a3867] log:
     │   │   ├─possible versions are: 0.2.0 - 1.2.2 or uninstalled
     │   │   └─restricted by compatibility requirements with OrdinaryDiffEqFIRK [5960d6e9] to versions: 1.2.2
     │   │     └─OrdinaryDiffEqFIRK [5960d6e9] log: see above
     │   └─restricted by compatibility requirements with DynamicalSystemsBase [6e36e845] to versions: [1.0.0 - 2.1.3, 3.0.0 - 3.3.26] or uninstalled, leaving only versions: [1.7.2 - 2.1.3, 3.0.0 - 3.3.26]
     │     └─DynamicalSystemsBase [6e36e845] log:
     │       ├─possible versions are: 0.11.0 - 3.12.0 or uninstalled
     │       ├─restricted by compatibility requirements with DynamicalSystems [61744808] to versions: 1.0.0 - 3.12.0
     │       │ └─DynamicalSystems [61744808] log: see above
     │       ├─restricted by compatibility requirements with SciMLBase [0bca4576] to versions: [0.11.0 - 2.3.2, 3.3.1 - 3.12.0] or uninstalled, leaving only versions: [1.0.0 - 2.3.2, 3.3.1 - 3.12.0]
     │       │ └─SciMLBase [0bca4576] log:
     │       │   ├─possible versions are: 1.0.0 - 2.61.0 or uninstalled
     │       │   ├─restricted by compatibility requirements with RecursiveArrayTools [731186ca] to versions: 2.11.0 - 2.61.0 or uninstalled
     │       │   │ └─RecursiveArrayTools [731186ca] log: see above
     │       │   ├─restricted by compatibility requirements with LinearSolve [7ed4a6bd] to versions: 2.26.3 - 2.61.0
     │       │   │ └─LinearSolve [7ed4a6bd] log: see above
     │       │   └─restricted by compatibility requirements with OrdinaryDiffEqNonlinearSolve [127b3ac7] to versions: 2.48.1 - 2.61.0
     │       │     └─OrdinaryDiffEqNonlinearSolve [127b3ac7] log:
     │       │       ├─possible versions are: 1.0.0 - 1.2.4 or uninstalled
     │       ├─restricted by compatibility requirements with Reexport [189a3867] to versions: [0.11.0 - 1.0.2, 1.6.7 - 3.12.0] or uninstalled, leaving only versions: [1.0.0 - 1.0.2, 1.6.7 - 2.3.2, 3.3.1 - 3.12.0]
     │       │ └─Reexport [189a3867] log: see above
     │       ├─restricted by compatibility requirements with DiffEqBase [2b5f629d] to versions: 1.3.1 - 3.12.0 or uninstalled, leaving only versions: [1.6.7 - 2.3.2, 3.3.1 - 3.12.0]
     │       │ └─DiffEqBase [2b5f629d] log:
     │       │   ├─possible versions are: 3.13.2 - 6.160.0 or uninstalled
     │       │   └─restricted by compatibility requirements with OrdinaryDiffEqFIRK [5960d6e9] to versions: 6.152.2 - 6.160.0
     │       │     └─OrdinaryDiffEqFIRK [5960d6e9] log: see above
     │       └─restricted by compatibility requirements with ChaosTools [608a59af] to versions: 1.6.0 - 2.9.1, leaving only versions: 1.6.7 - 2.3.2
     │         └─ChaosTools [608a59af] log: see above
     ├─restricted by compatibility requirements with DSP [717857b8] to versions: [0.12.0 - 1.6.1, 1.29.1 - 3.2.1] or uninstalled, leaving only versions: [1.0.0 - 1.6.1, 1.29.1 - 3.2.1]
     │ └─DSP [717857b8] log:
     │   ├─possible versions are: 0.5.1 - 0.7.10 or uninstalled
     │   └─restricted by compatibility requirements with Polynomials [f27b6e38] to versions: 0.7.9 - 0.7.10 or uninstalled
     │     └─Polynomials [f27b6e38] log:
     │       ├─possible versions are: 0.5.0 - 4.0.11 or uninstalled
     │       └─restricted by compatibility requirements with OrdinaryDiffEqFIRK [5960d6e9] to versions: 4.0.11
     │         └─OrdinaryDiffEqFIRK [5960d6e9] log: see above
     ├─restricted by compatibility requirements with IntervalRootFinding [d2bf35a9] to versions: 0.12.0 - 2.4.0 or uninstalled, leaving only versions: [1.0.0 - 1.6.1, 1.29.1 - 2.4.0]
     │ └─IntervalRootFinding [d2bf35a9] log:
     │   ├─possible versions are: 0.4.0 - 0.6.0 or uninstalled
     │   └─restricted by compatibility requirements with Polynomials [f27b6e38] to versions: 0.6.0 or uninstalled
     │     └─Polynomials [f27b6e38] log: see above
     └─restricted by compatibility requirements with Reexport [189a3867] to versions: 1.23.1 - 3.2.1 or uninstalled, leaving only versions: 1.29.1 - 2.4.0
       └─Reexport [189a3867] log: see above

@ChrisRackauckas
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   Installed Measurements ───────── v2.11.0
   Installed Roots ──────────────── v2.2.1
   Installed DynamicalSystemsBase ─ v3.12.0
   Installed NearestNeighbors ───── v0.4.21
   Installed IntervalRootFinding ── v0.5.11
   Installed DSP ────────────────── v0.7.10
   Installed GPUArraysCore ──────── v0.2.0
   Installed Neighborhood ───────── v0.2.4
   Installed LombScargle ────────── v1.0.3
   Installed IntervalArithmetic ─── v0.20.9
   Installed ChaosTools ─────────── v3.2.1
    Updating `~/.julia/environments/v1.10/Project.toml`
  [608a59af] + ChaosTools v3.2.1
  [276daf66] + SpecialFunctions v2.4.0
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [47edcb42] + ADTypes v1.10.0
  [621f4979] + AbstractFFTs v1.5.0
  [7d9f7c33] + Accessors v0.1.38
  [79e6a3ab] + Adapt v4.1.1
  [66dad0bd] + AliasTables v1.1.3
  [4fba245c] + ArrayInterface v7.17.0
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] + CPUSummary v0.2.6
  [96374032] + CRlibm v1.0.1
  [49dc2e85] + Calculus v0.5.2
  [608a59af] + ChaosTools v3.2.1
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [861a8166] + Combinatorics v1.0.2
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [a33af91c] + CompositionsBase v0.1.2
  [2569d6c7] + ConcreteStructs v0.2.3
  [187b0558] + ConstructionBase v1.5.8
  [adafc99b] + CpuId v0.3.1
  [717857b8] + DSP v0.7.10
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [2b5f629d] + DiffEqBase v6.160.0
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.113
  [ffbed154] + DocStringExtensions v0.9.3
  [6e36e845] + DynamicalSystemsBase v3.12.0
  [4e289a0a] + EnumX v1.0.4
  [f151be2c] + EnzymeCore v0.8.6
  [90fa49ef] + ErrorfreeArithmetic v0.5.2
  [e2ba6199] + ExprTools v0.1.10
⌅ [6b7a57c9] + Expronicon v0.8.5
  [7a1cc6ca] + FFTW v1.8.0
  [7034ab61] + FastBroadcast v0.3.5
  [9aa1b823] + FastClosures v0.3.2
  [a4df4552] + FastPower v1.1.1
  [fa42c844] + FastRounding v0.3.1
  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.26.0
  [f6369f11] + ForwardDiff v0.10.38
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
  [46192b85] + GPUArraysCore v0.2.0
  [34004b35] + HypergeometricFunctions v0.3.25
  [615f187c] + IfElse v0.1.1
⌅ [d1acc4aa] + IntervalArithmetic v0.20.9
⌅ [d2bf35a9] + IntervalRootFinding v0.5.11
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.2
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.6.1
  [10f19ff3] + LayoutPointers v0.1.17
  [d3d80556] + LineSearches v7.3.0
  [2ab3a3ac] + LogExpFunctions v0.3.28
  [fc60dff9] + LombScargle v1.0.3
  [d8e11817] + MLStyle v0.4.17
  [1914dd2f] + MacroTools v0.5.13
  [d125e4d3] + ManualMemory v0.1.8
  [eff96d63] + Measurements v2.11.0
  [e1d29d7a] + Missings v1.2.0
  [46d2c3a1] + MuladdMacro v0.2.4
  [d41bc354] + NLSolversBase v7.8.3
  [77ba4419] + NaNMath v1.0.2
  [b8a86587] + NearestNeighbors v0.4.21
  [645ca80c] + Neighborhood v0.2.4
  [429524aa] + Optim v1.10.0
  [bbf590c4] + OrdinaryDiffEqCore v1.10.2
  [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0
  [90014a1f] + PDMats v0.11.31
  [d96e819e] + Parameters v0.12.3
  [f517fe37] + Polyester v0.7.16
  [1d0040c9] + PolyesterWeave v0.2.2
⌅ [f27b6e38] + Polynomials v3.2.13
  [85a6dd25] + PositiveFactorizations v0.2.4
  [d236fae5] + PreallocationTools v0.4.24
  [92933f4c] + ProgressMeter v1.10.2
  [43287f4e] + PtrArrays v1.2.1
  [1fd47b50] + QuadGK v2.11.1
  [3cdcf5f2] + RecipesBase v1.3.4
  [731186ca] + RecursiveArrayTools v3.27.3
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.0
  [79098fc4] + Rmath v0.8.0
  [f2b01f46] + Roots v2.2.1
  [5eaf0fd0] + RoundingEmulator v0.2.1
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.13
  [94e857df] + SIMDTypes v0.1.0
  [0bca4576] + SciMLBase v2.60.0
  [c0aeaf25] + SciMLOperators v0.3.12
  [53ae85a6] + SciMLStructures v1.5.0
  [3cc68bcd] + SetRounding v0.2.1
  [efcf1570] + Setfield v1.1.1
  [ce78b400] + SimpleUnPack v1.1.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.4.0
  [40b095a5] + StateSpaceSets v2.3.0
  [aedffcd0] + Static v1.1.1
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.8
  [1e83bf80] + StaticArraysCore v1.4.3
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.3
  [4c63d2b9] + StatsFuns v1.3.2
  [7792a7ef] + StrideArraysCore v0.5.7
  [2efcf032] + SymbolicIndexingInterface v0.3.35
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [8290d209] + ThreadingUtilities v0.5.2
  [781d530d] + TruncatedStacktraces v1.4.0
  [3a884ed6] + UnPack v1.0.2
  [4e9b3aee] + CRlibm_jll v1.0.1+0
  [f5851436] + FFTW_jll v3.3.10+1
  [1d5cc7b8] + IntelOpenMP_jll v2024.2.1+0
  [856f044c] + MKL_jll v2024.2.0+0
  [efe28fd5] + OpenSpecFun_jll v0.5.5+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [1317d2d5] + oneTBB_jll v2021.12.0+0
  [8ba89e20] + Distributed
  [9fa8497b] + Future
  [4af54fe1] + LazyArtifacts
  [37e2e46d] + LinearAlgebra
  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [4607b0f0] + SuiteSparse
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [05823500] + OpenLibm_jll v0.8.1+2
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
Precompiling project...
  ✓ Polynomials
  ✓ GPUArraysCore
  ✓ SciMLBase
   Installed IrrationalConstants ── v0.1.1
   Installed Roots ──────────────── v1.2.0
   Installed DynamicalSystemsBase ─ v2.3.2
   Installed SpecialFunctions ───── v1.8.8
   Installed Entropies ──────────── v1.2.1
   Installed DelayEmbeddings ────── v2.8.0
   Installed IntervalArithmetic ─── v0.22.19
   Installed IntervalRootFinding ── v0.6.0
   Installed BranchAndPrune ─────── v0.2.1
   Installed ChaosTools ─────────── v2.4.0
   Installed Wavelets ───────────── v0.9.5
    Updating `~/.julia/environments/v1.10/Project.toml`
⌃ [608a59af] ↓ ChaosTools v3.2.1 ⇒ v2.4.0
  [d2bf35a9] ↑ IntervalRootFinding v0.5.11 ⇒ v0.6.0
⌅ [276daf66] ↓ SpecialFunctions v2.4.0 ⇒ v1.8.8
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [1520ce14] + AbstractTrees v0.4.5
  [d3bc4f2e] + BranchAndPrune v0.2.1
  [96374032] - CRlibm v1.0.1
  [d360d2e6] + ChainRulesCore v1.25.0
⌃ [608a59af] ↓ ChaosTools v3.2.1 ⇒ v2.4.0
  [5732040d] + DelayEmbeddings v2.8.0
⌅ [6e36e845] ↓ DynamicalSystemsBase v3.12.0 ⇒ v2.3.2
  [ed8fcbec] + Entropies v1.2.1
  [90fa49ef] - ErrorfreeArithmetic v0.5.2
  [fa42c844] - FastRounding v0.3.1
  [6a86dc24] - FiniteDiff v2.26.0
  [d1acc4aa] ↑ IntervalArithmetic v0.20.9 ⇒ v0.22.19
  [d2bf35a9] ↑ IntervalRootFinding v0.5.11 ⇒ v0.6.0
⌅ [92d709cd] ↓ IrrationalConstants v0.2.2 ⇒ v0.1.1
  [d3d80556] - LineSearches v7.3.0
  [d41bc354] - NLSolversBase v7.8.3
  [429524aa] - Optim v1.10.0
  [bbf590c4] - OrdinaryDiffEqCore v1.10.2
  [b1df2697] - OrdinaryDiffEqTsit5 v1.1.0
  [f27b6e38] ↑ Polynomials v3.2.13 ⇒ v4.0.11
  [85a6dd25] - PositiveFactorizations v0.2.4
⌅ [f2b01f46] ↓ Roots v2.2.1 ⇒ v1.2.0
  [3cc68bcd] - SetRounding v0.2.1
  [05bca326] + SimpleDiffEq v1.11.1
  [ce78b400] - SimpleUnPack v1.1.0
⌅ [276daf66] ↓ SpecialFunctions v2.4.0 ⇒ v1.8.8
⌅ [2913bbd2] ↓ StatsBase v0.34.3 ⇒ v0.33.21
⌅ [29a6e085] + Wavelets v0.9.5
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
┌ Warning: Circular dependency detected. Precompilation will be skipped for:
│   DiffEqBaseChainRulesCoreExt [b00db79b-61e3-50fb-b26f-2d35b2d9e4ed]
│   DynamicalSystemsBase [6e36e845-645a-534a-86f2-f5d4aa5a06b4]
│   ChaosTools [608a59af-f2a3-5ad4-90b4-758bdf3122a7]
│   DiffEqBaseMeasurementsExt [f030c83e-7d7f-544f-a855-333e4a237e34]
│   SimpleDiffEq [05bca326-078c-5bf0-a5bf-ce7c7982d7fd]
│   DiffEqBaseDistributionsExt [24f3332a-0dc5-5d65-94b6-25e75cab9690]
│   DiffEqBaseSparseArraysExt [4131c53f-b1d6-5635-a7a3-57f6f930b644]
└ @ Pkg.API ~/.julia/juliaup/julia-1.10.6+0.aarch64.apple.darwin14/share/julia/stdlib/v1.10/Pkg/src/API.jl:1279
Precompiling project...
  ✓ IrrationalConstants
  ✓ StatsBase
  ✓ SpecialFunctions
  ✓ SciMLBase → SciMLBaseChainRulesCoreExt
  ✗ Entropies
  16 dependencies successfully precompiled in 14 seconds. 172 already precompiled. 7 skipped due to circular dependency.
  4 dependencies precompiled but different versions are currently loaded. Restart julia to access the new versions
  2 dependencies had output during precompilation:
┌ Wavelets
│  WARNING: method definition for #computeWavelets#6 at /Users/chrisrackauckas/.julia/packages/Wavelets/ANOxi/src/mod/WT.jl:660 declares type variable S but does not use it.
│  WARNING: method definition for #computeWavelets#7 at /Users/chrisrackauckas/.julia/packages/Wavelets/ANOxi/src/mod/WT.jl:664 declares type variable S but does not use it.
│  WARNING: method definition for #computeWavelets#8 at /Users/chrisrackauckas/.julia/packages/Wavelets/ANOxi/src/mod/WT.jl:670 declares type variable S but does not use it.
│  WARNING: method definition for cwt at /Users/chrisrackauckas/.julia/packages/Wavelets/ANOxi/src/mod/Transforms.jl:216 declares type variable U but does not use it.
└  
┌ Roots
│  WARNING: method definition for #init_state!#5 at /Users/chrisrackauckas/.julia/packages/Roots/6cvBF/src/find_zero.jl:125 declares type variable S but does not use it.
│  WARNING: method definition for #init_state!#5 at /Users/chrisrackauckas/.julia/packages/Roots/6cvBF/src/find_zero.jl:125 declares type variable T but does not use it.
│  WARNING: method definition for #find_zero#20 at /Users/chrisrackauckas/.julia/packages/Roots/6cvBF/src/bracketing.jl:303 declares type variable M but does not use it.
└

ChaosTools.jl seems to be the problem. Remove it. You can't use SpecialFunctions.jl v2 with it, and that means that like half of the Julia ecosystem isn't compatible 😅 JuliaDynamics/ChaosTools.jl#338 is required (CC @Datseris).

@ChrisRackauckas
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I can work around it with JuliaSymbolics/Symbolics.jl#1363 but ChaosTools is still in the wrong here.

@ChrisRackauckas
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3 years later and JuliaMath/SpecialFunctions.jl#361 still rings true 😅

@ChrisRackauckas
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#2534 will also help.

@Datseris
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ChaosTools does allow SpecialFunctions v2 in its Projet.toml... So I guess the interval arethmetic people did something.

@Datseris
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I'll try to get in JuliaDynamics/ChaosTools.jl#338 asap

@Datseris
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I'm back here to say that ChaosTools.jl can't be the problem. In my personal projects, out side of development, SpecialFunctions works fine with ChaosTools and OrdinaryDiffEq:

(NonlinearDynamicsTextbook) pkg> st -m ChaosTools OrdinaryDiffEqVerner SpecialFunctions
Status `C:\Users\datse\OneDrive - University of Exeter\Teaching\NonlinearDynamicsTextbook\Manifest.toml`     
  [608a59af] ChaosTools v3.2.1
  [79d7bb75] OrdinaryDiffEqVerner v1.1.1
  [276daf66] SpecialFunctions v2.4.0

The breakages that the interval people have done are many so I don't see JuliaDynamics/ChaosTools.jl#338 being merged in anytime soon, sorry.

@Datseris
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@ChrisRackauckas why did you originally say that ChaosTools.jl is the problem? Saying that "half the ecosystem isn't compatible with it" is quite a stretch I think.

@ChrisRackauckas
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Sorry, I had thought about that it restricted SpecialFunctions v2. If you look at the stats, anything that doesn't allow SpecialFunctions v2 at this point is a ticking time bomb, "half of the ecosystem" is a pretty close approximation.

That said, I see there was a required third piece here:

(@v1.10) pkg> add ChaosTools SpecialFunctions@2 IntervalRootFinding@0.6
   Resolving package versions...
ERROR: Unsatisfiable requirements detected for package ChaosTools [608a59af]:
 ChaosTools [608a59af] log:
 ├─possible versions are: 0.12.0-3.2.1 or uninstalled
 ├─restricted to versions * by an explicit requirement, leaving only versions: 0.12.0-3.2.1
 ├─restricted by compatibility requirements with SpecialFunctions [276daf66] to versions: [1.2.1-1.26.0, 2.6.2-3.2.1] or uninstalled, leaving only versions: [1.2.1-1.26.0, 2.6.2-3.2.1]
 │ └─SpecialFunctions [276daf66] log:
 │   ├─possible versions are: 0.7.0-2.4.0 or uninstalled
 │   └─restricted to versions 2 by an explicit requirement, leaving only versions: 2.0.0-2.4.0
 ├─restricted by compatibility requirements with IntervalRootFinding [d2bf35a9] to versions: 0.12.0-2.4.0 or uninstalled, leaving only versions: 1.2.1-1.26.0
 │ └─IntervalRootFinding [d2bf35a9] log:
 │   ├─possible versions are: 0.4.0-0.6.0 or uninstalled
 │   └─restricted to versions 0.6 by an explicit requirement, leaving only versions: 0.6.0
 ├─restricted by compatibility requirements with LombScargle [fc60dff9] to versions: [0.12.0-1.6.1, 1.19.1-3.2.1] or uninstalled, leaving only versions: [1.2.1-1.6.1, 1.19.1-1.26.0]
 │ └─LombScargle [fc60dff9] log:
 │   ├─possible versions are: 0.4.0-1.0.3 or uninstalled
 │   └─restricted by compatibility requirements with SpecialFunctions [276daf66] to versions: 1.0.3 or uninstalled
 │     └─SpecialFunctions [276daf66] log: see above
 ├─restricted by compatibility requirements with StatsBase [2913bbd2] to versions: 1.10.0-3.2.1 or uninstalled, leaving only versions: 1.19.1-1.26.0
 │ └─StatsBase [2913bbd2] log:
 │   ├─possible versions are: 0.24.0-0.34.3 or uninstalled
 │   ├─restricted by compatibility requirements with SortingAlgorithms [a2af1166] to versions: 0.33.7-0.34.3 or uninstalled, leaving only versions: 0.33.7-0.34.3
 │   │ └─SortingAlgorithms [a2af1166] log:
 │   │   ├─possible versions are: 0.3.0-1.2.1 or uninstalled
 │   │   ├─restricted by julia compatibility requirements to versions: 1.1.0-1.2.1 or uninstalled
 │   └─restricted by compatibility requirements with ChaosTools [608a59af] to versions: 0.24.0-0.33.21, leaving only versions: 0.33.7-0.33.21
 │     └─ChaosTools [608a59af] log: see above
 └─restricted by compatibility requirements with Entropies [ed8fcbec] to versions: [0.12.0-1.18.0, 2.0.0-3.2.1] or uninstalled — no versions left
   └─Entropies [ed8fcbec] log:
     ├─possible versions are: 0.1.0-1.2.1 or uninstalled
     └─restricted by compatibility requirements with SpecialFunctions [276daf66] to versions: [0.1.0-0.8.0, 1.1.1-1.2.1] or uninstalled
       └─SpecialFunctions [276daf66] log: see above

That's the set that gives issues. The issue seems to be that the current ChaosTools restricts Polynomials.jl

⌅ [f27b6e38] + Polynomials v3.2.13

(@v1.10) pkg> add ChaosTools SpecialFunctions@2 IntervalRootFinding
   Resolving package versions...
    Updating `~/.julia/environments/v1.10/Project.toml`
  [608a59af] + ChaosTools v3.2.1
⌅ [d2bf35a9] + IntervalRootFinding v0.5.11
  [276daf66] + SpecialFunctions v2.4.0
    Updating `~/.julia/environments/v1.10/Manifest.toml`
  [47edcb42] + ADTypes v1.10.0
  [621f4979] + AbstractFFTs v1.5.0
  [7d9f7c33] + Accessors v0.1.38
  [79e6a3ab] + Adapt v4.1.1
  [66dad0bd] + AliasTables v1.1.3
  [4fba245c] + ArrayInterface v7.17.0
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] + CPUSummary v0.2.6
  [96374032] + CRlibm v1.0.1
  [49dc2e85] + Calculus v0.5.2
  [608a59af] + ChaosTools v3.2.1
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [861a8166] + Combinatorics v1.0.2
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [a33af91c] + CompositionsBase v0.1.2
  [2569d6c7] + ConcreteStructs v0.2.3
  [187b0558] + ConstructionBase v1.5.8
  [adafc99b] + CpuId v0.3.1
  [717857b8] + DSP v0.7.10
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [2b5f629d] + DiffEqBase v6.160.0
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.113
  [ffbed154] + DocStringExtensions v0.9.3
  [6e36e845] + DynamicalSystemsBase v3.12.0
  [4e289a0a] + EnumX v1.0.4
  [f151be2c] + EnzymeCore v0.8.6
  [90fa49ef] + ErrorfreeArithmetic v0.5.2
  [e2ba6199] + ExprTools v0.1.10
⌅ [6b7a57c9] + Expronicon v0.8.5
  [7a1cc6ca] + FFTW v1.8.0
  [7034ab61] + FastBroadcast v0.3.5
  [9aa1b823] + FastClosures v0.3.2
  [a4df4552] + FastPower v1.1.1
  [fa42c844] + FastRounding v0.3.1
  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.26.0
  [f6369f11] + ForwardDiff v0.10.38
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
  [46192b85] + GPUArraysCore v0.2.0
  [34004b35] + HypergeometricFunctions v0.3.25
  [615f187c] + IfElse v0.1.1
⌅ [d1acc4aa] + IntervalArithmetic v0.20.9
⌅ [d2bf35a9] + IntervalRootFinding v0.5.11
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.2
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.6.1
  [10f19ff3] + LayoutPointers v0.1.17
  [d3d80556] + LineSearches v7.3.0
  [2ab3a3ac] + LogExpFunctions v0.3.28
  [fc60dff9] + LombScargle v1.0.3
  [d8e11817] + MLStyle v0.4.17
  [1914dd2f] + MacroTools v0.5.13
  [d125e4d3] + ManualMemory v0.1.8
  [eff96d63] + Measurements v2.11.0
  [e1d29d7a] + Missings v1.2.0
  [46d2c3a1] + MuladdMacro v0.2.4
  [d41bc354] + NLSolversBase v7.8.3
  [77ba4419] + NaNMath v1.0.2
  [b8a86587] + NearestNeighbors v0.4.21
  [645ca80c] + Neighborhood v0.2.4
  [429524aa] + Optim v1.10.0
  [bbf590c4] + OrdinaryDiffEqCore v1.10.2
  [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0
  [90014a1f] + PDMats v0.11.31
  [d96e819e] + Parameters v0.12.3
  [f517fe37] + Polyester v0.7.16
  [1d0040c9] + PolyesterWeave v0.2.2
⌅ [f27b6e38] + Polynomials v3.2.13
  [85a6dd25] + PositiveFactorizations v0.2.4
  [d236fae5] + PreallocationTools v0.4.24
  [92933f4c] + ProgressMeter v1.10.2
  [43287f4e] + PtrArrays v1.2.1
  [1fd47b50] + QuadGK v2.11.1
  [3cdcf5f2] + RecipesBase v1.3.4
  [731186ca] + RecursiveArrayTools v3.27.3
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.0
  [79098fc4] + Rmath v0.8.0
  [f2b01f46] + Roots v2.2.1
  [5eaf0fd0] + RoundingEmulator v0.2.1
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.13
  [94e857df] + SIMDTypes v0.1.0
  [0bca4576] + SciMLBase v2.61.0
  [c0aeaf25] + SciMLOperators v0.3.12
  [53ae85a6] + SciMLStructures v1.5.0
  [3cc68bcd] + SetRounding v0.2.1
  [efcf1570] + Setfield v1.1.1
  [ce78b400] + SimpleUnPack v1.1.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.4.0
  [40b095a5] + StateSpaceSets v2.3.0
  [aedffcd0] + Static v1.1.1
  [0d7ed370] + StaticArrayInterface v1.8.0
  [90137ffa] + StaticArrays v1.9.8
  [1e83bf80] + StaticArraysCore v1.4.3
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.3
  [4c63d2b9] + StatsFuns v1.3.2
  [7792a7ef] + StrideArraysCore v0.5.7
  [2efcf032] + SymbolicIndexingInterface v0.3.35
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [8290d209] + ThreadingUtilities v0.5.2
  [781d530d] + TruncatedStacktraces v1.4.0
  [3a884ed6] + UnPack v1.0.2
  [4e9b3aee] + CRlibm_jll v1.0.1+0
  [f5851436] + FFTW_jll v3.3.10+1
  [1d5cc7b8] + IntelOpenMP_jll v2024.2.1+0
  [856f044c] + MKL_jll v2024.2.0+0
  [efe28fd5] + OpenSpecFun_jll v0.5.5+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [1317d2d5] + oneTBB_jll v2021.12.0+0
  [8ba89e20] + Distributed
  [9fa8497b] + Future
  [4af54fe1] + LazyArtifacts
  [37e2e46d] + LinearAlgebra
  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [4607b0f0] + SuiteSparse
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [05823500] + OpenLibm_jll v0.8.1+2
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
Precompiling project...
  8 dependencies successfully precompiled in 7 seconds. 182 already precompiled.

So to be more precise, it's incompatible with ~4% of packages, since about half require the Polynomials post break. I'm not sure what in the list is then requiring Polynomials v4 but it's pretty common so I wouldn't be surprised if it's more than one thing.

@Datseris
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Polynomials restriction comes from DSP... :( I'll open an issue there.

@Datseris Datseris mentioned this issue Nov 16, 2024
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@ChrisRackauckas
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And note from this I'm making a few more things more robust to this just to give the ecosystem a little bit of Slack. And #2534 is a necessary change anyways which will make this go away. But for pedanticness I do like to track these issues down so we get the bumps we need since otherwise other cases will just trigger in the same way in the future.

@Datseris
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Man this is so annoying... So many packages releasing breaking stuff. DSP also had another breaking release that for whatever reason CompatHelper didn't tell me about.

@Datseris
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Anyways, soon we will have this fixed in ChaosTools.

@ChrisRackauckas
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Double check CompatHelper is active by looking at the actions tab. If no commits are made in a 3 month period then CompatHelper will disable itself.

@Datseris
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Datseris commented Nov 16, 2024 •
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Okay, so I found that DSP is not the culptrit. It really is all because of interval arethmetic. That keeps bounded Polynomials as well. So I need to update the IntervalArethmetic. But amazingly the developers released the version without a documentation (docs only exist for the previous major version) so I don't even know how. So for now we unfortunately have to wait.

here is the add ChaosTools on a new temp environment:

(jl_efUSuS) pkg> st -m Polynomials SpecialFunctions
Status `C:\Users\datse\AppData\Local\Temp\jl_efUSuS\Manifest.toml`
⌅ [f27b6e38] Polynomials v3.2.13
  [276daf66] SpecialFunctions v2.4.0
Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

(jl_efUSuS) pkg> status --outdated -m
Status `C:\Users\datse\AppData\Local\Temp\jl_efUSuS\Manifest.toml`
⌅ [6b7a57c9] Expronicon v0.8.5 (<v0.10.13): SciMLBase
⌅ [d1acc4aa] IntervalArithmetic v0.20.9 (<v0.22.19): IntervalRootFinding
⌅ [d2bf35a9] IntervalRootFinding v0.5.11 (<v0.6.0): ChaosTools
⌅ [f27b6e38] Polynomials v3.2.13 (<v4.0.11): IntervalRootFinding

@Datseris
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Next version of chaostools is now released with all updated compats.

@ChrisRackauckas
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Beautiful and #2534 should finish today, so most things should just be more robust.

@ChrisRackauckas
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The FIRK Generator split was done, and with that and other changes in the ecosystem we should be much more robust to this.

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@ChrisRackauckas @Datseris @cjoshliu