Skip to content

Commit

Permalink
build based on 4f15e39
Browse files Browse the repository at this point in the history
  • Loading branch information
Documenter.jl committed Dec 4, 2023
1 parent 546ad65 commit c7788f7
Show file tree
Hide file tree
Showing 15 changed files with 103 additions and 62 deletions.
2 changes: 1 addition & 1 deletion dev/.documenter-siteinfo.json
Original file line number Diff line number Diff line change
@@ -1 +1 @@
{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2023-11-27T22:31:36","documenter_version":"1.1.2"}}
{"documenter":{"julia_version":"1.9.4","generation_timestamp":"2023-12-04T14:28:08","documenter_version":"1.2.1"}}
85 changes: 60 additions & 25 deletions dev/assets/Manifest.toml
Original file line number Diff line number Diff line change
Expand Up @@ -161,9 +161,9 @@ version = "0.3.0"

[[deps.Compat]]
deps = ["UUIDs"]
git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c"
git-tree-sha1 = "886826d76ea9e72b35fcd000e535588f7b60f21d"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "4.10.0"
version = "4.10.1"
weakdeps = ["Dates", "LinearAlgebra"]

[deps.Compat.extensions]
Expand Down Expand Up @@ -295,9 +295,9 @@ version = "1.15.1"

[[deps.Distances]]
deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151"
git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0"
uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
version = "0.10.10"
version = "0.10.11"
weakdeps = ["ChainRulesCore", "SparseArrays"]

[deps.Distances.extensions]
Expand Down Expand Up @@ -331,10 +331,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.9.3"

[[deps.Documenter]]
deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "Downloads", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "Test", "Unicode"]
git-tree-sha1 = "662fb21ae7fad33e044c2b59ece832fdce32c171"
deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "Test", "Unicode"]
git-tree-sha1 = "2613dbec8f4748273bbe30ba71fd5cb369966bac"
uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
version = "1.1.2"
version = "1.2.1"

[[deps.DomainSets]]
deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays", "Statistics"]
Expand Down Expand Up @@ -366,9 +366,15 @@ version = "1.0.4"

[[deps.EnzymeCore]]
deps = ["Adapt"]
git-tree-sha1 = "ab81396e4e7b61f5590db02fa1c17fae4f16d7ab"
git-tree-sha1 = "2efe862de93cd87f620ad6ac9c9e3f83f1b2841b"
uuid = "f151be2c-9106-41f4-ab19-57ee4f262869"
version = "0.6.3"
version = "0.6.4"

[[deps.Expat_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c"
uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
version = "2.5.0+0"

[[deps.ExponentialUtilities]]
deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"]
Expand Down Expand Up @@ -403,9 +409,9 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"

[[deps.FillArrays]]
deps = ["LinearAlgebra", "Random"]
git-tree-sha1 = "28e4e9c4b7b162398ec8004bdabe9a90c78c122d"
git-tree-sha1 = "fdd015769934644858b4bcc69a03bb06f4e31357"
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
version = "1.8.0"
version = "1.9.0"
weakdeps = ["PDMats", "SparseArrays", "Statistics"]

[deps.FillArrays.extensions]
Expand Down Expand Up @@ -478,6 +484,18 @@ git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6"
uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e"
version = "0.5.3"

[[deps.Git]]
deps = ["Git_jll"]
git-tree-sha1 = "51764e6c2e84c37055e846c516e9015b4a291c7d"
uuid = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2"
version = "1.3.0"

[[deps.Git_jll]]
deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"]
git-tree-sha1 = "bb8f7cc77ec1152414b2af6db533d9471cfbb2d1"
uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb"
version = "2.42.0+0"

[[deps.Glob]]
git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496"
uuid = "c27321d9-0574-5035-807b-f59d2c89b15c"
Expand Down Expand Up @@ -535,10 +553,10 @@ uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235"
version = "0.1.2"

[[deps.IntelOpenMP_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32"
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "31d6adb719886d4e32e38197aae466e98881320b"
uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0"
version = "2023.2.0+0"
version = "2024.0.0+0"

[[deps.InteractiveUtils]]
deps = ["Markdown"]
Expand Down Expand Up @@ -584,9 +602,9 @@ version = "0.21.4"

[[deps.JuliaFormatter]]
deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"]
git-tree-sha1 = "3d5b5b539e4606dcca0e6a467b98a64c8da4850b"
git-tree-sha1 = "2d2f630931dcf9cc4f753777a9c9ffb48d504116"
uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
version = "1.0.42"
version = "1.0.43"

[[deps.JumpProcesses]]
deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"]
Expand Down Expand Up @@ -689,6 +707,12 @@ version = "1.11.0+1"
[[deps.Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"

[[deps.Libiconv_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175"
uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
version = "1.17.0+0"

[[deps.LineSearches]]
deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"]
git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d"
Expand Down Expand Up @@ -764,10 +788,10 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"]
SpecialFunctionsExt = "SpecialFunctions"

[[deps.MKL_jll]]
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913"
deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"]
git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0"
uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7"
version = "2023.2.0+0"
version = "2024.0.0+0"

[[deps.MLStyle]]
git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8"
Expand Down Expand Up @@ -840,9 +864,9 @@ version = "0.5.3"

[[deps.MutableArithmetics]]
deps = ["LinearAlgebra", "SparseArrays", "Test"]
git-tree-sha1 = "6985021d02ab8c509c841bb8b2becd3145a7b490"
git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8"
uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
version = "1.3.3"
version = "1.4.0"

[[deps.NLSolversBase]]
deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
Expand Down Expand Up @@ -898,6 +922,12 @@ deps = ["Artifacts", "Libdl"]
uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
version = "0.8.1+0"

[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "3.0.12+0"

[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
Expand All @@ -915,6 +945,11 @@ git-tree-sha1 = "5f9e7ce227d0e447c3803cc05ef5d8f75f84b9ea"
uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
version = "6.59.3"

[[deps.PCRE2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15"
version = "10.42.0+0"

[[deps.PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "4e5be6bb265d33669f98eb55d2a57addd1eeb72c"
Expand Down Expand Up @@ -1430,9 +1465,9 @@ uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"

[[deps.Unitful]]
deps = ["Dates", "LinearAlgebra", "Random"]
git-tree-sha1 = "242982d62ff0d1671e9029b52743062739255c7e"
git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa"
uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
version = "1.18.0"
version = "1.19.0"
weakdeps = ["ConstructionBase", "InverseFunctions"]

[deps.Unitful.extensions]
Expand All @@ -1447,9 +1482,9 @@ version = "0.1.5"

[[deps.VectorizationBase]]
deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"]
git-tree-sha1 = "b182207d4af54ac64cbc71797765068fdeff475d"
git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85"
uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
version = "0.21.64"
version = "0.21.65"

[[deps.VertexSafeGraphs]]
deps = ["Graphs"]
Expand Down
2 changes: 1 addition & 1 deletion dev/assets/themes/documenter-dark.css

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion dev/assets/themes/documenter-light.css

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion dev/fundamentals/FAQ/index.html

Large diffs are not rendered by default.

32 changes: 19 additions & 13 deletions dev/index.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion dev/interfaces/Algorithms/index.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion dev/interfaces/Common_Keywords/index.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion dev/interfaces/Differentiation/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -25,4 +25,4 @@

function _concrete_solve_forward(args...; kwargs...)
error("No sensitivity rules exist. Check that you added `using DiffEqSensitivity`")
end</code></pre><p>The sensitivity mechanism is kept in a separate package because of the high dependency and load time cost introduced by the automatic differentiation libraries. Different choices of automatic differentiation are then selected by the <code>sensealg</code> keyword argument in <code>solve</code>, which is made into a positional argument in the <code>_solve_adjoint</code> and other functions in order to allow dispatch.</p><h2 id="SensitivityADPassThrough"><a class="docs-heading-anchor" href="#SensitivityADPassThrough">SensitivityADPassThrough</a><a id="SensitivityADPassThrough-1"></a><a class="docs-heading-anchor-permalink" href="#SensitivityADPassThrough" title="Permalink"></a></h2><p>The special sensitivity algorithm <code>SensitivityADPassThrough</code> is used to ignore the internal sensitivity dispatches and instead do automatic differentiation directly through the solver. Generally this <code>sensealg</code> is only used internally.</p><h2 id="Note-about-ForwardDiff"><a class="docs-heading-anchor" href="#Note-about-ForwardDiff">Note about ForwardDiff</a><a id="Note-about-ForwardDiff-1"></a><a class="docs-heading-anchor-permalink" href="#Note-about-ForwardDiff" title="Permalink"></a></h2><p>ForwardDiff does not use ChainRules.jl and thus it completely ignores the special handling.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../Common_Keywords/">« Common Keyword Arguments</a><a class="docs-footer-nextpage" href="../PDE/">The PDE Definition Interface »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.2 on <span class="colophon-date" title="Monday 27 November 2023 22:31">Monday 27 November 2023</span>. Using Julia version 1.9.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
end</code></pre><p>The sensitivity mechanism is kept in a separate package because of the high dependency and load time cost introduced by the automatic differentiation libraries. Different choices of automatic differentiation are then selected by the <code>sensealg</code> keyword argument in <code>solve</code>, which is made into a positional argument in the <code>_solve_adjoint</code> and other functions in order to allow dispatch.</p><h2 id="SensitivityADPassThrough"><a class="docs-heading-anchor" href="#SensitivityADPassThrough">SensitivityADPassThrough</a><a id="SensitivityADPassThrough-1"></a><a class="docs-heading-anchor-permalink" href="#SensitivityADPassThrough" title="Permalink"></a></h2><p>The special sensitivity algorithm <code>SensitivityADPassThrough</code> is used to ignore the internal sensitivity dispatches and instead do automatic differentiation directly through the solver. Generally this <code>sensealg</code> is only used internally.</p><h2 id="Note-about-ForwardDiff"><a class="docs-heading-anchor" href="#Note-about-ForwardDiff">Note about ForwardDiff</a><a id="Note-about-ForwardDiff-1"></a><a class="docs-heading-anchor-permalink" href="#Note-about-ForwardDiff" title="Permalink"></a></h2><p>ForwardDiff does not use ChainRules.jl and thus it completely ignores the special handling.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../Common_Keywords/">« Common Keyword Arguments</a><a class="docs-footer-nextpage" href="../PDE/">The PDE Definition Interface »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.2.1 on <span class="colophon-date" title="Monday 4 December 2023 14:28">Monday 4 December 2023</span>. Using Julia version 1.9.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
Loading

0 comments on commit c7788f7

Please sign in to comment.