build based on 06d85d6

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.9.3","generation_timestamp":"2023-10-07T09:31:54","documenter_version":"1.1.0"}}
+{"documenter":{"julia_version":"1.9.3","generation_timestamp":"2023-10-07T11:03:04","documenter_version":"1.1.0"}}

dev/assets/Manifest.toml

@@ -1050,13 +1050,15 @@ uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
 version = "2.2.0"
 
     [deps.SciMLBase.extensions]
-    PyCallExt = "PyCall"
-    PythonCallExt = "PythonCall"
-    ZygoteExt = "Zygote"
+    SciMLBasePyCallExt = "PyCall"
+    SciMLBasePythonCallExt = "PythonCall"
+    SciMLBaseRCallExt = "RCall"
+    SciMLBaseZygoteExt = "Zygote"
 
     [deps.SciMLBase.weakdeps]
     PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
     PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
+    RCall = "6f49c342-dc21-5d91-9882-a32aef131414"
     Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [[deps.SciMLNLSolve]]

dev/index.html

@@ -8,10 +8,10 @@
   Official https://julialang.org/ release
 Platform Info:
   OS: Linux (x86_64-linux-gnu)
-  CPU: 2 × Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz
+  CPU: 2 × Intel(R) Xeon(R) Platinum 8370C CPU @ 2.80GHz
   WORD_SIZE: 64
   LIBM: libopenlibm
-  LLVM: libLLVM-14.0.6 (ORCJIT, skylake-avx512)
+  LLVM: libLLVM-14.0.6 (ORCJIT, icelake-server)
   Threads: 1 on 2 virtual cores</code></pre></details><details><summary>A more complete overview of all dependencies and their versions is also provided.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/work/SciMLBase.jl/SciMLBase.jl/docs/Manifest.toml`
   [47edcb42] ADTypes v0.2.4
   [a4c015fc] ANSIColoredPrinters v0.0.1
@@ -227,4 +227,4 @@
   [83775a58] Zlib_jll v1.2.13+0
   [8e850b90] libblastrampoline_jll v5.8.0+0
   [8e850ede] nghttp2_jll v1.48.0+0
-  [3f19e933] p7zip_jll v17.4.0+0</code></pre></details><p>You can also download the <a href="https://github.com/SciML/SciMLBase.jl/tree/gh-pages/v2.2.0/assets/Manifest.toml">manifest</a> file and the <a href="https://github.com/SciML/SciMLBase.jl/tree/gh-pages/v2.2.0/assets/Project.toml">project</a> file.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="interfaces/Problems/">SciMLProblems »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.0 on <span class="colophon-date" title="Saturday 7 October 2023 09:31">Saturday 7 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+  [3f19e933] p7zip_jll v17.4.0+0</code></pre></details><p>You can also download the <a href="https://github.com/SciML/SciMLBase.jl/tree/gh-pages/v2.2.0/assets/Manifest.toml">manifest</a> file and the <a href="https://github.com/SciML/SciMLBase.jl/tree/gh-pages/v2.2.0/assets/Project.toml">project</a> file.</p></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="interfaces/Problems/">SciMLProblems »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.0 on <span class="colophon-date" title="Saturday 7 October 2023 11:03">Saturday 7 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/interfaces/Differentiation/index.html

@@ -25,4 +25,4 @@
 
 function _concrete_solve_forward(args...; kwargs...)
   error("No sensitivity rules exist. Check that you added `using DiffEqSensitivity`")
-end</code></pre><p>The sensitivity mechanism is kept in a separate package because of the high dependency and load time cost introduced by the automatic differentiation libraries. Different choices of automatic differentiation are then selected by the <code>sensealg</code> keyword argument in <code>solve</code>, which is made into a positional argument in the <code>_solve_adjoint</code> and other functions in order to allow dispatch.</p><h2 id="SensitivityADPassThrough"><a class="docs-heading-anchor" href="#SensitivityADPassThrough">SensitivityADPassThrough</a><a id="SensitivityADPassThrough-1"></a><a class="docs-heading-anchor-permalink" href="#SensitivityADPassThrough" title="Permalink"></a></h2><p>The special sensitivity algorithm <code>SensitivityADPassThrough</code> is used to ignore the internal sensitivity dispatches and instead do automatic differentiation directly through the solver. Generally this <code>sensealg</code> is only used internally.</p><h2 id="Note-about-ForwardDiff"><a class="docs-heading-anchor" href="#Note-about-ForwardDiff">Note about ForwardDiff</a><a id="Note-about-ForwardDiff-1"></a><a class="docs-heading-anchor-permalink" href="#Note-about-ForwardDiff" title="Permalink"></a></h2><p>ForwardDiff does not use ChainRules.jl and thus it completely ignores the special handling.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../Common_Keywords/">« Common Keyword Arguments</a><a class="docs-footer-nextpage" href="../PDE/">The PDE Definition Interface »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.0 on <span class="colophon-date" title="Saturday 7 October 2023 09:31">Saturday 7 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+end</code></pre><p>The sensitivity mechanism is kept in a separate package because of the high dependency and load time cost introduced by the automatic differentiation libraries. Different choices of automatic differentiation are then selected by the <code>sensealg</code> keyword argument in <code>solve</code>, which is made into a positional argument in the <code>_solve_adjoint</code> and other functions in order to allow dispatch.</p><h2 id="SensitivityADPassThrough"><a class="docs-heading-anchor" href="#SensitivityADPassThrough">SensitivityADPassThrough</a><a id="SensitivityADPassThrough-1"></a><a class="docs-heading-anchor-permalink" href="#SensitivityADPassThrough" title="Permalink"></a></h2><p>The special sensitivity algorithm <code>SensitivityADPassThrough</code> is used to ignore the internal sensitivity dispatches and instead do automatic differentiation directly through the solver. Generally this <code>sensealg</code> is only used internally.</p><h2 id="Note-about-ForwardDiff"><a class="docs-heading-anchor" href="#Note-about-ForwardDiff">Note about ForwardDiff</a><a id="Note-about-ForwardDiff-1"></a><a class="docs-heading-anchor-permalink" href="#Note-about-ForwardDiff" title="Permalink"></a></h2><p>ForwardDiff does not use ChainRules.jl and thus it completely ignores the special handling.</p></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../Common_Keywords/">« Common Keyword Arguments</a><a class="docs-footer-nextpage" href="../PDE/">The PDE Definition Interface »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="auto">Automatic (OS)</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.1.0 on <span class="colophon-date" title="Saturday 7 October 2023 11:03">Saturday 7 October 2023</span>. Using Julia version 1.9.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>