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SciML · Jun 4, 2024 · 3ca42d7 · 3ca42d7
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diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json
@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.3","generation_timestamp":"2024-06-01T02:08:24","documenter_version":"1.4.1"}}
+{"documenter":{"julia_version":"1.10.3","generation_timestamp":"2024-06-04T18:10:14","documenter_version":"1.4.1"}}
diff --git a/dev/assets/Manifest.toml b/dev/assets/Manifest.toml
@@ -184,9 +184,9 @@ version = "0.5.0"
 
 [[deps.BandedMatrices]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
-git-tree-sha1 = "30b7ea34abc4fe816eb1a5f434a43da804836163"
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     [deps.BandedMatrices.extensions]
@@ -338,9 +338,9 @@ version = "0.3.13"
 
 [[deps.ChainRules]]
 deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
-git-tree-sha1 = "450ba466228b4dd2f620dc50d36cef7eb23ff8a7"
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-version = "1.67.0"
+version = "1.68.0"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra"]
@@ -1064,9 +1064,9 @@ version = "0.1.3"
 
 [[deps.Functors]]
 deps = ["LinearAlgebra"]
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 uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196"
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 [[deps.Future]]
 deps = ["Random"]
@@ -1526,9 +1526,9 @@ version = "1.2.2"
 
 [[deps.LazyArrays]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"]
-git-tree-sha1 = "1567f3b9c49a8249c0921a6c29c3caddecf77383"
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 uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02"
-version = "2.0.2"
+version = "2.0.4"
 
     [deps.LazyArrays.extensions]
     LazyArraysBandedMatricesExt = "BandedMatrices"
@@ -1750,9 +1750,9 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"]
 
 [[deps.Lux]]
 deps = ["ADTypes", "Adapt", "ArgCheck", "ArrayInterface", "ChainRulesCore", "ConcreteStructs", "ConstructionBase", "FastClosures", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxDeviceUtils", "LuxLib", "MacroTools", "Markdown", "OhMyThreads", "PrecompileTools", "Preferences", "Random", "Reexport", "Setfield", "WeightInitializers"]
-git-tree-sha1 = "d5fbf786916789f89d4822456ef641c53a9fdc60"
+git-tree-sha1 = "101ffb569f50c6a19e9ebb66e828c8a320dde6ca"
 uuid = "b2108857-7c20-44ae-9111-449ecde12c47"
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     [deps.Lux.extensions]
     LuxComponentArraysExt = "ComponentArrays"
@@ -1874,9 +1874,9 @@ version = "2024.1.0+0"
 
 [[deps.MLJModelInterface]]
 deps = ["Random", "ScientificTypesBase", "StatisticalTraits"]
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@@ -2011,9 +2011,9 @@ version = "0.2.0"
 
 [[deps.MonteCarloMeasurements]]
 deps = ["Distributed", "Distributions", "ForwardDiff", "GenericSchur", "LinearAlgebra", "MacroTools", "Random", "RecipesBase", "Requires", "SLEEFPirates", "StaticArrays", "Statistics", "StatsBase", "Test"]
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@@ -2147,9 +2147,9 @@ version = "2.0.0"
 
 [[deps.NonlinearSolve]]
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-git-tree-sha1 = "a5bc9c06e28108e04de0485273f0b5933cec66ed"
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@@ -2296,9 +2296,9 @@ version = "0.2.2"
 
 [[deps.OptimizationOptimJL]]
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 [[deps.OptimizationOptimisers]]
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@@ -2450,9 +2450,9 @@ version = "0.2.4"
 
 [[deps.PreallocationTools]]
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@@ -2589,9 +2589,9 @@ version = "0.6.12"
 
 [[deps.RecursiveArrayTools]]
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     [deps.RecursiveArrayTools.extensions]
@@ -2921,9 +2921,9 @@ version = "1.4.2"
 
 [[deps.StatisticalTraits]]
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+version = "3.3.0"
 
 [[deps.Statistics]]
 deps = ["LinearAlgebra", "SparseArrays"]

diff --git a/dev/comparisons/cppfortran/index.html b/dev/comparisons/cppfortran/index.html
diff --git a/dev/comparisons/matlab/index.html b/dev/comparisons/matlab/index.html
diff --git a/dev/comparisons/python/index.html b/dev/comparisons/python/index.html
diff --git a/dev/comparisons/r/index.html b/dev/comparisons/r/index.html
diff --git a/dev/getting_started/find_root/index.html b/dev/getting_started/find_root/index.html
@@ -66,4 +66,4 @@
 u: 2-element Vector{Float64}:
  -2.129924444096732e-29
  -2.398137151871876e-28</code></pre><h3 id="Step-5:-Analyze-the-Solution"><a class="docs-heading-anchor" href="#Step-5:-Analyze-the-Solution">Step 5: Analyze the Solution</a><a id="Step-5:-Analyze-the-Solution-1"></a><a class="docs-heading-anchor-permalink" href="#Step-5:-Analyze-the-Solution" title="Permalink"></a></h3><p>Now let&#39;s check out the solution. First of all, what kind of thing is the <code>sol</code>? We can see that by asking for its type:</p><pre><code class="language-julia hljs">typeof(sol)</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">SciMLBase.NonlinearSolution{Float64, 1, Vector{Float64}, Vector{Float64}, SciMLBase.NonlinearProblem{Vector{Float64}, true, ModelingToolkit.MTKParameters{Tuple{Vector{Float64}}, Tuple{}, Tuple{}, Tuple{}, Tuple{}, Nothing, Nothing}, SciMLBase.NonlinearFunction{true, SciMLBase.FullSpecialize, ModelingToolkit.var&quot;#f#529&quot;{RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋arg1, :ˍ₋arg2), ModelingToolkit.var&quot;#_RGF_ModTag&quot;, ModelingToolkit.var&quot;#_RGF_ModTag&quot;, (0x0bec91c5, 0x7102a3b4, 0x25790b05, 0xeedeb041, 0xb28da2c7), Nothing}, RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋out, :ˍ₋arg1, :ˍ₋arg2), ModelingToolkit.var&quot;#_RGF_ModTag&quot;, ModelingToolkit.var&quot;#_RGF_ModTag&quot;, (0x85b9a698, 0x76e4b08e, 0x07ba5224, 0xe2c014ba, 0x43cce4c2), Nothing}}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, ModelingToolkit.var&quot;#generated_observed#532&quot;{ModelingToolkit.NonlinearSystem, Dict{Any, Any}}, Nothing, ModelingToolkit.NonlinearSystem, Nothing}, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}, SciMLBase.StandardNonlinearProblem}, NonlinearSolve.GeneralizedFirstOrderAlgorithm{nothing, :NewtonRaphson, NonlinearSolve.NoLineSearch, Missing, NonlinearSolve.NewtonDescent{Nothing, typeof(NonlinearSolve.DEFAULT_PRECS)}, Nothing, Nothing, Nothing}, Nothing, Nothing, SciMLBase.NLStats, NonlinearSolve.NonlinearSolveTrace{false, false, NonlinearSolve.TraceMinimal, Nothing, SciMLBase.NonlinearProblem{Vector{Float64}, true, ModelingToolkit.MTKParameters{Tuple{Vector{Float64}}, Tuple{}, Tuple{}, Tuple{}, Tuple{}, Nothing, Nothing}, SciMLBase.NonlinearFunction{true, SciMLBase.FullSpecialize, ModelingToolkit.var&quot;#f#529&quot;{RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋arg1, :ˍ₋arg2), ModelingToolkit.var&quot;#_RGF_ModTag&quot;, ModelingToolkit.var&quot;#_RGF_ModTag&quot;, (0x0bec91c5, 0x7102a3b4, 0x25790b05, 0xeedeb041, 0xb28da2c7), Nothing}, RuntimeGeneratedFunctions.RuntimeGeneratedFunction{(:ˍ₋out, :ˍ₋arg1, :ˍ₋arg2), ModelingToolkit.var&quot;#_RGF_ModTag&quot;, ModelingToolkit.var&quot;#_RGF_ModTag&quot;, (0x85b9a698, 0x76e4b08e, 0x07ba5224, 0xe2c014ba, 0x43cce4c2), Nothing}}, LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, ModelingToolkit.var&quot;#generated_observed#532&quot;{ModelingToolkit.NonlinearSystem, Dict{Any, Any}}, Nothing, ModelingToolkit.NonlinearSystem, Nothing}, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}, SciMLBase.StandardNonlinearProblem}}}</code></pre><p>From this, we can see that it is an <code>NonlinearSolution</code>. We can see the documentation for how to use the <code>NonlinearSolution</code> by checking the <a href="https://docs.sciml.ai/NonlinearSolve/stable/basics/nonlinear_solution/">NonlinearSolve.jl solution type page.</a> For example, the solution is stored as <code>.u</code>. What is the solution to our nonlinear system, and what is the final residual value? We can check it as follows:</p><pre><code class="language-julia hljs"># Analyze the solution
-@show sol[[x,y,z]], sol.resid</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">([-2.129924444096732e-29, -5.537803554651503e-28, -2.398137151871876e-28], [-5.32481111024183e-27, 6.395032404991669e-28])</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../fit_simulation/">« Fit a simulation to a dataset</a><a class="docs-footer-nextpage" href="../../comparisons/python/">Getting Started with Julia&#39;s SciML for the Python User »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Saturday 1 June 2024 02:08">Saturday 1 June 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+@show sol[[x,y,z]], sol.resid</code></pre><pre class="documenter-example-output"><code class="nohighlight hljs ansi">([-2.129924444096732e-29, -5.537803554651503e-28, -2.398137151871876e-28], [-5.32481111024183e-27, 6.395032404991669e-28])</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../fit_simulation/">« Fit a simulation to a dataset</a><a class="docs-footer-nextpage" href="../../comparisons/python/">Getting Started with Julia&#39;s SciML for the Python User »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Tuesday 4 June 2024 18:10">Tuesday 4 June 2024</span>. Using Julia version 1.10.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
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		{"documenter":{"julia_version":"1.10.3","generation_timestamp":"2024-06-01T02:08:24","documenter_version":"1.4.1"}}
		{"documenter":{"julia_version":"1.10.3","generation_timestamp":"2024-06-04T18:10:14","documenter_version":"1.4.1"}}