build based on b7e6d99

SciML · Apr 18, 2024 · 3e01ca3 · 3e01ca3
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diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json
@@ -1 +1 @@
-{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-04-09T22:11:41","documenter_version":"1.3.0"}}
+{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-04-18T22:36:54","documenter_version":"1.4.0"}}
diff --git a/dev/assets/Manifest.toml b/dev/assets/Manifest.toml
@@ -16,9 +16,9 @@ version = "0.0.1"
 
 [[deps.AbstractAlgebra]]
 deps = ["InteractiveUtils", "LinearAlgebra", "MacroTools", "Preferences", "Random", "RandomExtensions", "SparseArrays", "Test"]
-git-tree-sha1 = "e4eebce3c99ad5718d33a434874b82610d18e2b6"
+git-tree-sha1 = "20b4984a6fa7e22346b4f420125342142d367913"
 uuid = "c3fe647b-3220-5bb0-a1ea-a7954cac585d"
-version = "0.40.7"
+version = "0.40.9"
 
 [[deps.AbstractTrees]]
 git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177"
@@ -106,9 +106,9 @@ version = "7.9.0"
 
 [[deps.ArrayLayouts]]
 deps = ["FillArrays", "LinearAlgebra"]
-git-tree-sha1 = "0330bc3e828a05d1073553fb56f9695d73077370"
+git-tree-sha1 = "33207a8be6267bc389d0701e97a9bce6a4de68eb"
 uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
-version = "1.9.1"
+version = "1.9.2"
 weakdeps = ["SparseArrays"]
 
     [deps.ArrayLayouts.extensions]
@@ -274,9 +274,9 @@ version = "1.16.0"
 
 [[deps.DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
-git-tree-sha1 = "0f4b5d62a88d8f59003e43c25a8a90de9eb76317"
+git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82"
 uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.18.18"
+version = "0.18.20"
 
 [[deps.DataValueInterfaces]]
 git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
@@ -289,9 +289,9 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 
 [[deps.DiffEqBase]]
 deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
-git-tree-sha1 = "4fa023dbb15b3485426bbc6c43e030c14250d664"
+git-tree-sha1 = "531c53fd0405716712a8b4960216c3b7b5ec89b9"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.149.0"
+version = "6.149.1"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseChainRulesCoreExt = "ChainRulesCore"
@@ -319,9 +319,9 @@ version = "6.149.0"
 
 [[deps.DiffEqCallbacks]]
 deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "2df0433103c89ee2dad56f4ef9c7755521464a39"
+git-tree-sha1 = "ec436ca77daad49b71147d873638c206543c2312"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
-version = "3.5.0"
+version = "3.6.1"
 
     [deps.DiffEqCallbacks.weakdeps]
     OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
@@ -367,15 +367,15 @@ version = "0.9.3"
 
 [[deps.Documenter]]
 deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"]
-git-tree-sha1 = "4a40af50e8b24333b9ec6892546d9ca5724228eb"
+git-tree-sha1 = "f15a91e6e3919055efa4f206f942a73fedf5dfe6"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "1.3.0"
+version = "1.4.0"
 
 [[deps.DomainSets]]
 deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays"]
-git-tree-sha1 = "81dab983a0203f835f9d6dec348f200a4979c755"
+git-tree-sha1 = "a0c11553b6c58bfc0283d8279dd3798150b77ac5"
 uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf"
-version = "0.7.11"
+version = "0.7.12"
 
 [[deps.Downloads]]
 deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
@@ -390,9 +390,9 @@ version = "0.6.8"
 
 [[deps.DynamicPolynomials]]
 deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"]
-git-tree-sha1 = "0bb0a6f812213ecc8fbbcf472f4a993036858971"
+git-tree-sha1 = "0c056035f7de73b203a5295a22137f96fc32ad46"
 uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07"
-version = "0.5.5"
+version = "0.5.6"
 
 [[deps.DynamicQuantities]]
 deps = ["Compat", "PackageExtensionCompat", "Tricks"]
@@ -488,9 +488,9 @@ version = "1.2.0"
 
 [[deps.FiniteDiff]]
 deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"]
-git-tree-sha1 = "bc0c5092d6caaea112d3c8e3b238d61563c58d5f"
+git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3"
 uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
-version = "2.23.0"
+version = "2.23.1"
 
     [deps.FiniteDiff.extensions]
     FiniteDiffBandedMatricesExt = "BandedMatrices"
@@ -721,9 +721,9 @@ version = "0.4.6"
 
 [[deps.Latexify]]
 deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"]
-git-tree-sha1 = "cad560042a7cc108f5a4c24ea1431a9221f22c1b"
+git-tree-sha1 = "e0b5cd21dc1b44ec6e64f351976f961e6f31d6c4"
 uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316"
-version = "0.16.2"
+version = "0.16.3"
 
     [deps.Latexify.extensions]
     DataFramesExt = "DataFrames"
@@ -905,9 +905,9 @@ version = "0.1.2"
 
 [[deps.MatrixFactorizations]]
 deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"]
-git-tree-sha1 = "eecef9daff3b2b58cc666ee0c85d1b9889b6e98e"
+git-tree-sha1 = "6731e0574fa5ee21c02733e397beb133df90de35"
 uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87"
-version = "2.1.2"
+version = "2.2.0"
 
 [[deps.MaybeInplace]]
 deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"]
@@ -931,9 +931,9 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
 [[deps.ModelingToolkit]]
 deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "FindFirstFunctions", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "OrdinaryDiffEq", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"]
-git-tree-sha1 = "89c783f325e131233928bf108e17b75a8ec34857"
+git-tree-sha1 = "43f984aae6f3d2bee9832f14da78eb965f6765e8"
 uuid = "961ee093-0014-501f-94e3-6117800e7a78"
-version = "9.9.0"
+version = "9.12.0"
 
     [deps.ModelingToolkit.extensions]
     MTKBifurcationKitExt = "BifurcationKit"
@@ -960,9 +960,9 @@ version = "0.5.4"
 
 [[deps.MutableArithmetics]]
 deps = ["LinearAlgebra", "SparseArrays", "Test"]
-git-tree-sha1 = "2d106538aebe1c165e16d277914e10c550e9d9b7"
+git-tree-sha1 = "c2e2d748aea87f006a87c1654878349baa04aaf0"
 uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
-version = "1.4.2"
+version = "1.4.3"
 
 [[deps.NLSolversBase]]
 deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
@@ -987,10 +987,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
 
 [[deps.NonlinearSolve]]
-deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "TimerOutputs"]
-git-tree-sha1 = "b9e12aa04c90a05d2aaded6f7c4d8b39e77751db"
+deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"]
+git-tree-sha1 = "4891b745bd621f88aac661f2504d014931b443ba"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "3.9.1"
+version = "3.10.0"
 
     [deps.NonlinearSolve.extensions]
     NonlinearSolveBandedMatricesExt = "BandedMatrices"
@@ -1019,9 +1019,9 @@ version = "3.9.1"
     Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [[deps.OffsetArrays]]
-git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621"
+git-tree-sha1 = "e64b4f5ea6b7389f6f046d13d4896a8f9c1ba71e"
 uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
-version = "1.13.0"
+version = "1.14.0"
 weakdeps = ["Adapt"]
 
     [deps.OffsetArrays.extensions]
@@ -1114,9 +1114,9 @@ version = "0.4.4"
 
 [[deps.Polyester]]
 deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"]
-git-tree-sha1 = "09f59c6dda37c7f73efddc5bdf6f92bc940eb484"
+git-tree-sha1 = "2ba5f33cbb51a85ef58a850749492b08f9bf2193"
 uuid = "f517fe37-dbe3-4b94-8317-1923a5111588"
-version = "0.7.12"
+version = "0.7.13"
 
 [[deps.PolyesterWeave]]
 deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"]
@@ -1126,9 +1126,9 @@ version = "0.2.1"
 
 [[deps.PreallocationTools]]
 deps = ["Adapt", "ArrayInterface", "ForwardDiff"]
-git-tree-sha1 = "b6665214f2d0739f2d09a17474dd443b9139784a"
+git-tree-sha1 = "a660e9daab5db07adf3dedfe09b435cc530d855e"
 uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46"
-version = "0.4.20"
+version = "0.4.21"
 
     [deps.PreallocationTools.extensions]
     PreallocationToolsReverseDiffExt = "ReverseDiff"
@@ -1232,9 +1232,9 @@ version = "3.13.0"
 
 [[deps.RecursiveFactorization]]
 deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"]
-git-tree-sha1 = "8bc86c78c7d8e2a5fe559e3721c0f9c9e303b2ed"
+git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6"
 uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4"
-version = "0.2.21"
+version = "0.2.23"
 
 [[deps.Reexport]]
 git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
@@ -1267,9 +1267,9 @@ version = "0.4.0+0"
 
 [[deps.RuntimeGeneratedFunctions]]
 deps = ["ExprTools", "SHA", "Serialization"]
-git-tree-sha1 = "6aacc5eefe8415f47b3e34214c1d79d2674a0ba2"
+git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00"
 uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47"
-version = "0.5.12"
+version = "0.5.13"
 
 [[deps.SHA]]
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
@@ -1288,9 +1288,9 @@ version = "0.6.42"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "d15c65e25615272e1b1c5edb1d307484c7942824"
+git-tree-sha1 = "816176bca8a93f8f50a33853e0933d6c4ec116d0"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.31.0"
+version = "2.33.1"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -1384,9 +1384,9 @@ version = "1.10.0"
 
 [[deps.SparseDiffTools]]
 deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
-git-tree-sha1 = "a616ac46c38da60ac05cecf52064d44732edd05e"
+git-tree-sha1 = "e2a3d8dfaffce3d3b8b5a0967c0cfcc89d34e425"
 uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
-version = "2.17.0"
+version = "2.17.1"
 
     [deps.SparseDiffTools.extensions]
     SparseDiffToolsEnzymeExt = "Enzyme"
@@ -1481,9 +1481,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"]
 
 [[deps.StrideArraysCore]]
 deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"]
-git-tree-sha1 = "b164d4dc04d7072066b725b7906e56331b170004"
+git-tree-sha1 = "b518da45c50dfab8384125ba829f1739bda41034"
 uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da"
-version = "0.5.3"
+version = "0.5.5"
 
 [[deps.StringManipulation]]
 deps = ["PrecompileTools"]
@@ -1495,7 +1495,7 @@ version = "0.3.4"
 deps = ["AbstractAlgebra", "Combinatorics", "DataStructures", "Dates", "Groebner", "IterTools", "LinearAlgebra", "Logging", "MacroTools", "Nemo", "ParamPunPam", "PrecompileTools", "Primes", "Random", "TimerOutputs"]
 path = "/home/runner/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl"
 uuid = "220ca800-aa68-49bb-acd8-6037fa93a544"
-version = "0.5.6"
+version = "0.5.7"
 weakdeps = ["ModelingToolkit", "SymbolicUtils", "Symbolics"]
 
     [deps.StructuralIdentifiability.extensions]
@@ -1512,9 +1512,9 @@ version = "7.2.1+1"
 
 [[deps.SymbolicIndexingInterface]]
 deps = ["Accessors", "ArrayInterface", "MacroTools", "RuntimeGeneratedFunctions", "StaticArraysCore"]
-git-tree-sha1 = "4b7f4c80449d8baae8857d55535033981862619c"
+git-tree-sha1 = "40ea524431a92328cd73582d1820a5b08247a40f"
 uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
-version = "0.3.15"
+version = "0.3.16"
 
 [[deps.SymbolicLimits]]
 deps = ["SymbolicUtils"]
@@ -1530,9 +1530,9 @@ version = "1.5.1"
 
 [[deps.Symbolics]]
 deps = ["ArrayInterface", "Bijections", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "ForwardDiff", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils"]
-git-tree-sha1 = "280c17e091a24283a59eedfc00a02026ec984b09"
+git-tree-sha1 = "4104548fff14d7370b278ee767651d6ec61eb195"
 uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7"
-version = "5.27.1"
+version = "5.28.0"
 
     [deps.Symbolics.extensions]
     SymbolicsGroebnerExt = "Groebner"
@@ -1600,9 +1600,9 @@ weakdeps = ["Random", "Test"]
 
 [[deps.TriangularSolve]]
 deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"]
-git-tree-sha1 = "7ee8ed8904e7dd5d31bb46294ef5644d9e2e44e4"
+git-tree-sha1 = "66c68a20907800c0b7c04ff8a6164115e8747de2"
 uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf"
-version = "0.1.21"
+version = "0.2.0"
 
 [[deps.Tricks]]
 git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f"
@@ -1656,9 +1656,9 @@ version = "0.2.1"
 
 [[deps.VectorizationBase]]
 deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"]
-git-tree-sha1 = "7209df901e6ed7489fe9b7aa3e46fb788e15db85"
+git-tree-sha1 = "ac377f0a248753a1b1d58bbc92a64f5a726dfb71"
 uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
-version = "0.21.65"
+version = "0.21.66"
 
 [[deps.VertexSafeGraphs]]
 deps = ["Graphs"]
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-04-09T22:11:41","documenter_version":"1.3.0"}}
		{"documenter":{"julia_version":"1.10.2","generation_timestamp":"2024-04-18T22:36:54","documenter_version":"1.4.0"}}