Code

Merge dev to main for new release#57

Code

Merged

SevLG merged 248 commits intomainScilifelabDataCentre/precision-medicine-portal-frontend:mainfrom devScilifelabDataCentre/precision-medicine-portal-frontend:devCopy head branch name to clipboardSep 9, 2024

+8,573

Commits

Commits on Dec 14, 2023

• Create publish_container_image.yml

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• Create snyk-scan.yml

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• Delete .github/workflows/snyk-scan.yml

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• First commit

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• moved README to root directory

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Commits on Dec 15, 2023

• Footer created and added to preliminary index page 'App'

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Commits on Dec 18, 2023

• New components dir and component name

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• Merge pull request #1 from ScilifelabDataCentre/footer_branch

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• Basic README setup for frontend project

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• Preliminary header component added

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Commits on Dec 20, 2023

• Basic header added, interface added

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• Added dockerfile

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• Adding snyk and trivy scans, changed snyk workflow to node@master, hopefully will work

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• Merge pull request #5 from ScilifelabDataCentre/security_scan_branch

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• Merge pull request #2 from ScilifelabDataCentre/readme_branch2

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Commits on Dec 21, 2023

• Changed twitter bird to X logo

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• Merge pull request #4 from ScilifelabDataCentre/dockerfile_branch

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• Merge pull request #6 from ScilifelabDataCentre/footer_branch

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• Merge pull request #3 from ScilifelabDataCentre/header_branch

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Commits on Dec 22, 2023

• Trying another setup for Dockerfile, because the build broke with the old one

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• Merge pull request #7 from ScilifelabDataCentre/dockerfile_branch

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• initial commit with react-markdown setup, no actual work done yet

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• Adding another lib for rendering markdown links, footnotes and such.

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Commits on Jan 9, 2024

• Added basic markdown handling component

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• Trying a new version of npm alpine and some minor changes

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• Merge pull request #8 from ScilifelabDataCentre/markdown_handling_branch

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• Merge pull request #9 from ScilifelabDataCentre/dockerfile_branch

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Commits on Jan 10, 2024

• Modifying Dockerfile to run node as non-root user

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• Merge pull request #10 from ScilifelabDataCentre/dockerfile_branch

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Commits on Jan 11, 2024

• Trying a new dockerfile with npm run build using an nginx image

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• Merge branch 'dev' into dockerfile_branch

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• Merge pull request #11 from ScilifelabDataCentre/dockerfile_branch

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• Added chown of /tmp for node user in Dockerfile

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• Added explicit ownership to copied files to node in docker image

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• Merge pull request #12 from ScilifelabDataCentre/dockerfile_branch

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• Removed chown for usr and tmp

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• Merge pull request #13 from ScilifelabDataCentre/dockerfile_branch

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Commits on Jan 12, 2024

• Changes to Dockerfile setup

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• Merge pull request #14 from ScilifelabDataCentre/dockerfile_branch

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Commits on Jan 17, 2024

• Added transparent PNG for logo, changed daisyUI theme

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• Ignore DS_Store

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• Merge pull request #15 from ScilifelabDataCentre/header_branch

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Commits on Jan 18, 2024

• Trying to set up and use an npm package called matomo-tracker-react

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Commits on Jan 22, 2024

• Organized the code a bit in footer, created interface for SVGs

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• Took out footer classes from JSX part

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• Merge pull request #17 from ScilifelabDataCentre/footer_branch

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• Merge pull request #16 from ScilifelabDataCentre/matomo_branch

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• Delete .DS_Store

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• Merge pull request #18 from ScilifelabDataCentre/SevLG-patch-1

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• Adding a Card Component with some prop options, testing them in App.tsx

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• Merge branch 'dev' into card_branch

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• Old matomo-tracker-react was not working, trying another version

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• Merge pull request #20 from ScilifelabDataCentre/matomo_branch

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• Merge pull request #19 from ScilifelabDataCentre/card_branch

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Commits on Jan 23, 2024

• Fixing footer so that it doesn't follow the screen, more consistent color

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• Merge branch 'footer_branch' into sebbe-pre-dev_branch

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• Adding tracking page view to App for testing

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• Merge branch 'matomo_branch' into sebbe-pre-dev_branch

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• Added a black with fade textbar and formated index page

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• Merge branch 'index_page_branch' into sebbe-pre-dev_branch

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• Adding a placeholder image carousel component

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• Merge branch 'image_carousel_branch' into sebbe-pre-dev_branch

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• Doing some minor edits for the index page layout

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• Merge branch 'index_page_branch' into sebbe-pre-dev_branch

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Commits on Jan 24, 2024

• Merge pull request #21 from ScilifelabDataCentre/sebbe-pre-dev_branch

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Commits on Jan 25, 2024

• Implementing routing skeleton with empty pages

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• Something weird happened during merge, committing again

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• Removed unused import

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• Removed some unused vars, added some return values

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• Using white SciLifeLab Logo instead of green

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Commits on Jan 30, 2024

• Put together a working first version of privacy page, going to work on separating the components for reuse.

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• Merge branch 'privacy_page_branch' into sebbe-pre-dev_branch

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• Decided to just separate some of the code since the cookies alert might not need to be reused.

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• Merge branch 'privacy_page_branch' into sebbe-pre-dev_branch

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• Merge pull request #22 from ScilifelabDataCentre/sebbe-pre-dev_branch

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• Was hardcoding tailwind classes in different places, moved reusable strings to constants.ts

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• Merge branch 'code_organizing_branch' into sebbe-pre-dev_branch

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• Made a more dynamic way of rendering breadcrumbs

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• Merge branch 'privacy_page_branch' into sebbe-pre-dev_branch

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• Fiddled with header and body padding

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• Merge branch 'header_branch' into sebbe-pre-dev_branch

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• Merge pull request #23 from ScilifelabDataCentre/sebbe-pre-dev_branch

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Commits on Feb 1, 2024

• Generalizing CardComponent for different uses, had to make changes to HomePage and other files to make it work. Better organized now imo

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• Cards now working as intended on both HomePage and AboutPage

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• Using more simple flex rows instead of grids + rows for AboutPage

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• Merge branch 'about_page_branch' into sebbe-pre-dev_branch

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• Some polishing of the index page and related elements

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• Merge branch 'index_page_branch' into sebbe-pre-dev_branch

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• After looking it up, it appears concatenating strings for tailwind classes is problematic, keep hardcoding

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• Merge branch 'about_page_branch' into sebbe-pre-dev_branch

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• Fixed scaling of index page to look good on my laptop, need to make it responsive to different screen sizes

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• Merge branch 'index_page_branch' into sebbe-pre-dev_branch

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Commits on Feb 2, 2024

• Fiddled with cols and rows for card placement, started working on FAQ accordion

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Commits on Feb 5, 2024

• Assumed I had to write a function for accordion component, but just setting checked={true} for all made it work. Assume DaisyUI already has a function doing that in the background?

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• Separated AboutPage's different sections in preparation to make them tabs on About page

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• Fixed routing from clicking tabs to AboutPage's child elements

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• Adding some padding to give some space to the about page elements and children

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Commits on Feb 6, 2024

• Added content from NextCloud to public folder, nothing to do with AboutPage but accidentally added it in this active branch

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• Merge branch 'about_page_branch' into sebbe-pre-dev_branch

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• Adding text content to privacy page. Currently hardcoded manually, should work on a more dynamic solution that can extract text from file as it will be written in markdown format by Natashia.

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• Merge branch 'privacy_page_branch' into sebbe-pre-dev_branch

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• Removed some unused variables that had been moved to About pages children

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Commits on Feb 7, 2024

• Merge pull request #24 from ScilifelabDataCentre/sebbe-pre-dev_branch

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Commits on Feb 8, 2024

• Adding DS_Store to gitignore... again

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Commits on Feb 12, 2024

• Fixed routing issue by editing nginx.config in the nginx-unpriviliged image in the Dockerfile

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• Merge branch 'dockerfile_branch' into sebbe-pre-dev_branch

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• Merge pull request #25 from ScilifelabDataCentre/sebbe-pre-dev_branch

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Commits on Feb 13, 2024

• Changing 'var' variable declaration to 'let', which is scoped. Not of huge importance but might help in the future to keep track of code and bug hunting.

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• Merge branch 'code_organizing_branch' into sebbe-pre-dev_branch

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Commits on Feb 15, 2024

• Initial setup of cookies package and setting basic cookie in App.tsx

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• Clicking on opt out on privacy page now sets trackingEnabled to False

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• Tracking cookie expires after 365 days (GDPR sets 12 month limit on cookies)

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• Tried to collect the code for the tracking react event to one file, as well as doing some checks to see if the cookie exists before doing anything. Due to the way cookies are set had to do a workar…

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• Merge branch 'matomo_branch' into sebbe-pre-dev_branch

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• Merge pull request #26 from ScilifelabDataCentre/sebbe-pre-dev_branch

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Commits on Feb 16, 2024

• js-cookie package was installed in the wrong dir, fixed now

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• Merge pull request #27 from ScilifelabDataCentre/sebbe-pre-dev_branch

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• Added possibility to opt in, as well as text indicating if you're opting in or out

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• Merge branch 'matomo_branch' into sebbe-pre-dev_branch

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Commits on Mar 5, 2024

• Some initial work on creating a form for contacting us. Almost works, but having problems with updating app state.

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Commits on Mar 6, 2024

• Got the basic functionality in, it now tells you if your input is wrong while you write and the onSubmit function correctly notices if there are errors.

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Commits on Mar 7, 2024

• Basic functionality in place. Will start working on the visual layout

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• Mostly finished contact form with validation (some minor details might need adjusting. Currently used on the page since it is not connected to an email server yet, so we don't want people to think …

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• Merge branch 'contact_component_branch' into sebbe-pre-dev_branch

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• Removed a bunch of unused imports

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• Removed commented out code in App.tsx. Fixed issue where a non-link element was highlighted on home page.

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• Made the two columns on home page 'justify-between' so that they change distance depending on window size and spread out more. Will look very weird on large monitors so we need to fix breakpoints l…

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• Removed another unused import that I previously missed.

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Commits on Mar 8, 2024

• Merge branch 'minor_fixes' into sebbe-pre-dev_branch

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Commits on Mar 11, 2024

• Merge pull request #28 from ScilifelabDataCentre/sebbe-pre-dev_branch

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Commits on Mar 12, 2024

• Recreated the project using Vite, moved all the files, fixed configurations and Dockerfile settings. Works when running a test server and when using the docker image locally.

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Commits on Mar 13, 2024

• Merge pull request #29 from ScilifelabDataCentre/vite_rebuild

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• Fixing duplicate gitignore file and changing gitignore file for new vite project setup

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• Restructured content to it's own file, can be imported as a JS object to the target page. Will work similarly once we start consuming content from backend.

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• Fixed some of the previous pages to collect content in separate file and consume from there. Added team member descriptions to content to be consumed by the AboutPage later.

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• Merge branch 'content_setup' into pre-dev

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• Added links to frontend and backend in footer. Not sure about styling.

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• Added link to DC twitter, linked in, fixed a linked in SVG icon, removed some unused stuff from footer.

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• Merge branch 'footer_links' into pre-dev

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• Added Seb and Natashia team pics to content.ts and prepared content.ts for consumption of team images once we have all of them.

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Commits on Mar 14, 2024

• Added preliminary team pics to repo and content.ts

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• Adjusted image sizes, changed JSX structure to grid and used automatic output of team members in grid

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• Merge branch 'team_desc' into pre-dev

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• Changed visual design of github links below footer

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• Merge branch 'footer_links' into pre-dev

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• New pic for Sebbe, recropping of all pics to not be cut off

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• Merge branch 'team_desc' into pre-dev

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• Merge pull request #30 from ScilifelabDataCentre/pre-dev

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Commits on Mar 19, 2024

• Adding reCaptcha v2 functionality, unable to test locally because of how form manager works, so will have to push to the web page to see if it works.

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• Merge branch 'form_manager' into pre-dev

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• Merge pull request #31 from ScilifelabDataCentre/pre-dev

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• Fixed bug introduced when changing custom types

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• Merge pull request #32 from ScilifelabDataCentre/pre-dev

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• Something went wrong with the kubernetes deployment after switching to Vite. Tried some solutions and seems to be working on a local k8s cluster currently. Trying to push again

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• Merge pull request #33 from ScilifelabDataCentre/pre-dev

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• Fixed public key in wrong place for recaptcha

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• Merge pull request #34 from ScilifelabDataCentre/pre-dev

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Commits on Apr 12, 2024

• Only the header text changed

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• Fixed routes for header sections

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• Fixed the layout of the header, added navbar-end to have the menu properly centered

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• Fixed the router and file names

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• Changed the footer links

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• added Gradient color

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• Merge pull request #35 from ScilifelabDataCentre/jan-pre-dev

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• Suggestion to change footer color to teal-800 / Scilifelab color

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Commits on Apr 15, 2024

• New way of adding the header text. It is now stored in the content.ts file. This makes it easier to change and keep up to date. Moreover, it is relevant for the HeaderComponent layout change regard…

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• Theme update. New theme and new colors. Updated all pages to take theme colors instead for flexibility in the future. Now we can change the theme color only and the whole design changes accordingly…

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• Merge branch 'dev' into jan-pre-dev

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• Small update of header text

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• Merge branch 'jan-pre-dev' of https://github.com/ScilifelabDataCentre/precision-medicine-portal-frontend into jan-pre-dev

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• Updated FAQ component. No component is now open by default

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Commits on Apr 16, 2024

• Changed error text color in contact form. Changed size of header menu items

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• New update of text error colors in contact form

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• Merge pull request #36 from ScilifelabDataCentre/jan-pre-dev

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Commits on Apr 17, 2024

• Updated logo and better responsive layout

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• Merge pull request #37 from ScilifelabDataCentre/updated-logo

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  1b8151e

Commits on Apr 19, 2024

• Changed the size of the menu item text. Changed the margin top so it aligns with the logo text

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  JanProgrammierung

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  1da714d

Commits on Apr 22, 2024

• Merge pull request #38 from ScilifelabDataCentre/menu-item-height-fix

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  SevLG

  authored
  4bd029e

• Commented out unused import which prevented building image. Changed cards in aboutpage to be placed in the middle

  SevLG

  committed
  69f4ce8

• Also added keys to react component iteration, a minor bug causing warnings when running dev

  SevLG

  committed
  26547d6

• Merge pull request #39 from ScilifelabDataCentre/bugfix

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  SevLG

  authored
  47e867a

Commits on Apr 28, 2024

• Added new standard background color for the body in the config file. This is necessary to have margin space left and right in the correct color once the screen size is over 2xl. Footer margin has b…

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  JanProgrammierung

  committed
  2ab93fa

• Added footer and header px max 2xl part.

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  JanProgrammierung

  committed
  c2d6643

• Deleted s and d file

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  JanProgrammierung

  committed
  561e4bf

• HomePage bottom part is commented out for now. An AlternativeCarousel has been added. This one is split in 3 and links to three different page. The immuneDiscover part is not functional for now and…

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  JanProgrammierung

  committed
  e737042

Commits on Apr 29, 2024

• Fixing indentation on some divs

  SevLG

  committed
  4e04568

• Merge branch 'dev' into marginwhitespace

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  SevLG

  authored
  7230603

• Merge pull request #40 from ScilifelabDataCentre/marginwhitespace

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  JanProgrammierung

  authored
  db89b98

• Merge branch 'dev' into indexupdate

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  JanProgrammierung

  authored
  50670a3

Commits on Apr 30, 2024

• Major update to layout and design of about us pages. The tab selection colors have been changed. Moreover, the Team part which was previously included in the product subpage has now it's own tab. T…

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  JanProgrammierung

  committed
  1ab7937

• Fetching json data and filtering out non-precision medicine related sources finished

  SevLG

  committed
  079468d

Commits on May 2, 2024

• Updated the FAQ text and corrected it. The About Partners page has been updated. The content is taken from the md file on NextCloud. The pictures have not been updated yet. The structure of the fle…

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  JanProgrammierung

  committed
  d4a13f8

• Added alt descriptions to index page images

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  JanProgrammierung

  committed
  65091e9

Commits on May 6, 2024

• Updated the partner descriptions. Added images. Those still need to be aligned better.

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  JanProgrammierung

  committed
  005ddb5

• Working on data sources functionality

  SevLG

  committed
  174b2e5

Commits on May 7, 2024

• Continued work on data sources component functionality. Can now fetch and render JSON and add filters dynamically. Displaying data based on filters not working yet.

  SevLG

  committed
  3a00e9c

Commits on May 8, 2024

• Basic filter now works but needs to be tweaked to not be inclusive (only choose items that contain all the tags)

  SevLG

  committed
  691af18

• Merge pull request #41 from ScilifelabDataCentre/indexupdate

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  JanProgrammierung

  authored
  61eee6b

Commits on May 13, 2024

• Fixed checkbox filter to be exclusive rather than inclusive. Made some quality/readability changes in the code. Added search box that compares search string to both titles and search tags

  SevLG

  committed
  7225be5

Commits on May 14, 2024

• Added new mapping between data sources and disease types given by Natashia. Implemented a filter based on that. Also updated data type filters to filter on the data category of the source file. Add…

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  SevLG

  committed
  5544a04

Commits on May 16, 2024

• Now using updated data sources that have disease types integrated. They are not yet merged to the data.scilifelab.se repo, so currently using a raw from a branch in a forked repo, will change that …

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  SevLG

  committed
  6568461

• Merge branch 'dev' into data_sources

  SevLG

  authored
  9bbaa3c

• Installed and added Lato sans-serif as default font.

  SevLG

  committed
  b48e25e

• Working on data sources page styling. Mostly finished except transparent versions of images are not uploaded yet, so cannot add them

  SevLG

  committed
  cc08811

• Merge remote-tracking branch 'origin' into data_sources

  Show description for 1b2b58b
  SevLG

  committed
  1b2b58b

• Merge branch 'data_sources' of https://github.com/ScilifelabDataCentre/precision-medicine-portal-frontend into data_sources

  Show description for b4bcaac
  SevLG

  committed
  b4bcaac

• Fixed checkbox checked color

  SevLG

  committed
  28f2646

• Some minor adjustments to styling

  SevLG

  committed
  9b17078

• Updated images on organization about page

  JanProgrammierung

  committed
  e27fec2

• Added ; to types for consistency purposes. Moreover, I readded react-app folder to gitignore.

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  JanProgrammierung

  committed
  2cd45e2

• Added blank target to link, so it opens a new tab instead.

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  JanProgrammierung

  committed
  018035f

Commits on May 17, 2024

• Merge pull request #42 from ScilifelabDataCentre/data_sources

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  SevLG

  authored
  fdbdec5

• Merge pull request #44 from ScilifelabDataCentre/change_font

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  SevLG

  authored
  9a87528

Commits on May 20, 2024

• Merge branch 'dev' into aboutpageupdate

  SevLG

  authored
  94a233f

• Merge pull request #45 from ScilifelabDataCentre/aboutpageupdate

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  JanProgrammierung

  authored
  d079675

• Slightly increased size of linkedin SVG in footer. Fixed consistant image and card size for Team cards and Partner cards in About page. Fixed a minor issue with card components image display.

  SevLG

  committed
  46f0718

Commits on May 21, 2024

• Merge pull request #46 from ScilifelabDataCentre/fix_team_images

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  SevLG

  authored
  809baa6

• Commented out unused code, image won't be built when there are minor warnings

  SevLG

  committed
  260b885

• Merge pull request #47 from ScilifelabDataCentre/build_fix

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  SevLG

  authored
  168e0c0

Commits on May 23, 2024

• Added images to the public folder. This folder can be referenced in components. It is not always the best case but in this scenario it is acceptable. Moreover, the img element of the RenderDataSour…

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  JanProgrammierung

  committed
  ac6c39f

• Added new images. The BioSamples one is incorrect but can be fixed later. Also I changed the path linking to the official JSON file in the data platform repository now.

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  JanProgrammierung

  committed
  a46eca2

• Changed the img class and added padding to the parent div. The img is now always on the right hand side and has a good width as well as height. Moreover, I changed some of the pngs and took white s…

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  JanProgrammierung

  committed
  5bcc342

• Quick fix to have the disease types in alphabetical order.

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  JanProgrammierung

  committed
  dd95645

Commits on May 24, 2024

• Changed PRIDE_logo to PRIDE. Changed the height of the image so it is not too overwhelming.

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  JanProgrammierung

  committed
  5bea50b

• Changed and added images.

  Show description for e11cbb3
  JanProgrammierung

  committed
  e11cbb3

• Commented out the recently uncommented dataSourceURI to Data Platform Rep. The JSON there does not have disease types yet.

  Show description for 5fc0a97
  JanProgrammierung

  committed
  5fc0a97

• Added new text from Natashia. To have a separate paragraph, I created a new p element. Markdown component did not work properly with linebreaks without importing 2 extra packages. This might be use…

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  JanProgrammierung

  committed
  8847af4

Commits on May 27, 2024

• Changed the source of JSON file. It now links to the dev branch of the data platform rep. This one has faster updates and is correct.

  Show description for 2303f00
  JanProgrammierung

  committed
  2303f00

• Added object-right to have the images better aligned. Especially the Skin Foundation img.

  Show description for 9ed3703
  JanProgrammierung

  committed
  9ed3703

• Added margin left to the img element. This prevents long texts to the left to come to close and looking weird.

  Show description for 307f1f4
  JanProgrammierung

  committed
  307f1f4

Commits on May 28, 2024

• Merge pull request #48 from ScilifelabDataCentre/images_data_sources

  Show description for ae37f22
  JanProgrammierung

  authored
  ae37f22

• Merge branch 'dev' into about_product_update

  Show description for 4eb8440
  JanProgrammierung

  authored
  4eb8440

• Merge pull request #49 from ScilifelabDataCentre/about_product_update

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  JanProgrammierung

  authored
  fa5fa75

Commits on May 29, 2024

• Updated the header texts based on Natashia's file in NextCloud.

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  JanProgrammierung

  committed
  2f34694

Commits on May 30, 2024

• Merge pull request #50 from ScilifelabDataCentre/header-text-update

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  JanProgrammierung

  authored
  f565042

Commits on Jun 27, 2024

• My Signed Commit

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  natashiab

  committed
  a029137

Commits on Jun 28, 2024

• faq update all

  natashiab

  committed
  0c5defe

• faq update questionmark

  natashiab

  committed
  028542d

• Merge pull request #51 from ScilifelabDataCentre/faq_update

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  natashiab

  authored
  b371678

Commits on Jul 9, 2024

• “changes_policy”

  natashiab

  committed
  6ce24a0

• Added statistics section to HTML to add list styling

  SevLG

  committed
  b27fe02

Commits on Jul 12, 2024

• Merge pull request #52 from ScilifelabDataCentre/privacy

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  natashiab

  authored
  ea6b582

Commits on Aug 8, 2024

• “clinicaldatapage”

  natashiab

  committed
  9354574

• Merge branch 'dev' into clinical_data

  JanProgrammierung

  authored
  c61b314

Commits on Aug 9, 2024

• Updates: TailwindCSS instead of regular CSS. Fixing of margins between elements. Using defined color (primary) instead of setting with color code. Adding blank target to links.

  Show description for 98dc08c
  JanProgrammierung

  committed
  98dc08c

• Merge pull request #53 from ScilifelabDataCentre/clinical_data

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  JanProgrammierung

  authored
  c0dee98

Commits on Aug 13, 2024

• Added new Sonnhammer logo

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  JanProgrammierung

  committed
  3ea4e8c

• Merge pull request #54 from ScilifelabDataCentre/new-images-to-sources

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  JanProgrammierung

  authored
  164386c