pyproject.toml

[tool.poetry]
name = "variant_alert"
version = "0.1.0"
description = "Compare two clinvar VCF version and output differences of classification between gene and variants. Can also generate a clinvarome file."
authors = [
  "Mélanie Broutin <melanie.broutin@seqone.fr>",
  "Abdoulaye Diallo <abdoulaye.diallo@seqone.fr>",
  "Raphaël Lanos <raphael.lanos@seqone.fr>",
  "Kévin Yauy <kevin.yauy@seqone.fr>"
]

[tool.poetry.dependencies]
python = "^3.6"
pysam = "=0.15.3"
click = "^7.0"

[tool.poetry.dev-dependencies]
pytest = "^5.3"
pytest-cov = "^2.8"
flake8 = "^3.7"
black = {version = "^18.3-alpha.0", allows-prereleases = true}

[tool.poetry.scripts]
#clinvar-ftp = "ftp.cli:clinvar_ftp"
variant-alert = "variant_alert.cli:variant_alert"

[build-system]
requires = ["poetry>=0.12"]
build-backend = "poetry.masonry.api"