diff --git a/CRAN-SUBMISSION b/CRAN-SUBMISSION index 8c864a8..531bbb9 100644 --- a/CRAN-SUBMISSION +++ b/CRAN-SUBMISSION @@ -1,3 +1,3 @@ -Version: 2023.08.31 -Date: 2023-09-01 16:02:09 UTC -SHA: ee6217a76f6ace8b250108daca5ed2ddc3cb59a1 +Version: 2024.09.30 +Date: 2024-09-30 12:53:29 UTC +SHA: f4d8d073d55c1706ca542b9f5ec4593304ff9bbc diff --git a/DESCRIPTION b/DESCRIPTION index f9c7598..1f57436 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: gbm.auto Title: Automated Boosted Regression Tree Modelling and Mapping Suite -Version: 2024.09.30 +Version: 2024.10.01 Authors@R: person("Simon", "Dedman", , "simondedman@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9108-972X")) Description: Automates delta log-normal boosted regression tree abundance prediction. Loops through parameters provided (LR (learning rate), TC diff --git a/NEWS.md b/NEWS.md index f6f264c..da5108d 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,10 +1,10 @@ --- title: "NEWS.md" author: "Simon Dedman" -date: "2024-09-30" +date: "2024-10-01" output: html_document --- -# v2024.09.30 +# v2024.10.01 * shapefiles and other rgdal dependencies removed, CRAn push # v2023.08.31 diff --git a/R/gbm.auto.R b/R/gbm.auto.R index e0f2b91..3a31375 100644 --- a/R/gbm.auto.R +++ b/R/gbm.auto.R @@ -183,7 +183,7 @@ #' #' I strongly recommend that you download papers 1 to 5 (or just the doctoral thesis) on #' , with emphasis on P4 (the guide) and P1 (statistical background). -#' Elith et al 2008 () is also strongly +#' Elith et al 2008 () is also strongly #' recommended. #' Just because you CAN try every conceivable combination of tc, lr, bf, all, at once doesn't mean #' you should. Try a range of lr in shrinking orders of magnitude from 0.1 to 0.000001, find the diff --git a/README.Rmd b/README.Rmd index 98ed415..daa0587 100644 --- a/README.Rmd +++ b/README.Rmd @@ -26,7 +26,7 @@ Automatically runs numerous processes from R packages 'gbm' and 'dismo' and scri Also see each script's Details section in the manual pages, as these frequently contain tips or common bugfixes. -I strongly recommend that you download papers 1 to 5 (or just the doctoral thesis) on , with emphasis on P4 (the guide) and P1 (statistical background). Elith et al 2008 () is also strongly recommended. Also it's imperative you read the R help files for each function before you use them. In RStudio: Packages tab, scroll to gbm.auto, click its name, the click the function to see its man (manual) page. Read the whole thing. Function man pages can also be accessed from the console by typing +I strongly recommend that you download papers 1 to 5 (or just the doctoral thesis) on , with emphasis on P4 (the guide) and P1 (statistical background). Elith et al 2008 () is also strongly recommended. Also it's imperative you read the R help files for each function before you use them. In RStudio: Packages tab, scroll to gbm.auto, click its name, the click the function to see its man (manual) page. Read the whole thing. Function man pages can also be accessed from the console by typing ``` r ?function diff --git a/README.md b/README.md index 41888c2..1c558ed 100644 --- a/README.md +++ b/README.md @@ -24,12 +24,12 @@ frequently contain tips or common bugfixes. I strongly recommend that you download papers 1 to 5 (or just the doctoral thesis) on , with emphasis on P4 (the guide) and P1 (statistical background). Elith et al 2008 -() is also -strongly recommended. Also it’s imperative you read the R help files for -each function before you use them. In RStudio: Packages tab, scroll to -gbm.auto, click its name, the click the function to see its man (manual) -page. Read the whole thing. Function man pages can also be accessed from -the console by typing +() +is also strongly recommended. Also it’s imperative you read the R help +files for each function before you use them. In RStudio: Packages tab, +scroll to gbm.auto, click its name, the click the function to see its +man (manual) page. Read the whole thing. Function man pages can also be +accessed from the console by typing ``` r ?function diff --git a/cran-comments.md b/cran-comments.md index ae2a0d0..5470224 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,7 +1,7 @@ --- title: "cran-comments" author: "Simon Dedman" -date: "30 September 2024" +date: "01 October 2024" output: html_document --- diff --git a/man/gbm.auto.Rd b/man/gbm.auto.Rd index 9ead5f6..2340d5b 100644 --- a/man/gbm.auto.Rd +++ b/man/gbm.auto.Rd @@ -252,7 +252,7 @@ traceback() to find the source of errors. I strongly recommend that you download papers 1 to 5 (or just the doctoral thesis) on \url{http://www.simondedman.com}, with emphasis on P4 (the guide) and P1 (statistical background). -Elith et al 2008 (\url{http://refhub.elsevier.com/S0304-3800(15)00207-0/sbref0085}) is also strongly +Elith et al 2008 (\url{https://besjournals.onlinelibrary.wiley.com/doi/10.1111/j.1365-2656.2008.01390.x}) is also strongly recommended. Just because you CAN try every conceivable combination of tc, lr, bf, all, at once doesn't mean you should. Try a range of lr in shrinking orders of magnitude from 0.1 to 0.000001, find the