Standardized lib naming, new default 'distro' target

Doxyfile

@@ -1,4 +1,4 @@
-# Doxyfile 1.9.7
+# Doxyfile 1.10.0
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
@@ -63,6 +63,12 @@ PROJECT_BRIEF          = "The NOVAS C library, made better"
 
 PROJECT_LOGO           = resources/smithsonian-logo-55x55.png
 
+# With the PROJECT_ICON tag one can specify an icon that is included in the tabs
+# when the HTML document is shown. Doxygen will copy the logo to the output
+# directory.
+
+PROJECT_ICON           =
+
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
 # into which the generated documentation will be written. If a relative path is
 # entered, it will be relative to the location where doxygen was started. If
@@ -366,9 +372,9 @@ TOC_INCLUDE_HEADINGS   = 5
 # The MARKDOWN_ID_STYLE tag can be used to specify the algorithm used to
 # generate identifiers for the Markdown headings. Note: Every identifier is
 # unique.
-# Possible values are: DOXYGEN Use a fixed 'autotoc_md' string followed by a
-# sequence number starting at 0. and GITHUB Use the lower case version of title
-# with any whitespace replaced by '-' and punctations characters removed..
+# Possible values are: DOXYGEN use a fixed 'autotoc_md' string followed by a
+# sequence number starting at 0 and GITHUB use the lower case version of title
+# with any whitespace replaced by '-' and punctuation characters removed.
 # The default value is: DOXYGEN.
 # This tag requires that the tag MARKDOWN_SUPPORT is set to YES.
 
@@ -978,12 +984,12 @@ INPUT_FILE_ENCODING    =
 # Note the list of default checked file patterns might differ from the list of
 # default file extension mappings.
 #
-# If left blank the following patterns are tested:*.c, *.cc, *.cxx, *.cpp,
-# *.c++, *.java, *.ii, *.ixx, *.ipp, *.i++, *.inl, *.idl, *.ddl, *.odl, *.h,
-# *.hh, *.hxx, *.hpp, *.h++, *.l, *.cs, *.d, *.php, *.php4, *.php5, *.phtml,
-# *.inc, *.m, *.markdown, *.md, *.mm, *.dox (to be provided as doxygen C
-# comment), *.py, *.pyw, *.f90, *.f95, *.f03, *.f08, *.f18, *.f, *.for, *.vhd,
-# *.vhdl, *.ucf, *.qsf and *.ice.
+# If left blank the following patterns are tested:*.c, *.cc, *.cxx, *.cxxm,
+# *.cpp, *.cppm, *.ccm, *.c++, *.c++m, *.java, *.ii, *.ixx, *.ipp, *.i++, *.inl,
+# *.idl, *.ddl, *.odl, *.h, *.hh, *.hxx, *.hpp, *.h++, *.ixx, *.l, *.cs, *.d,
+# *.php, *.php4, *.php5, *.phtml, *.inc, *.m, *.markdown, *.md, *.mm, *.dox (to
+# be provided as doxygen C comment), *.py, *.pyw, *.f90, *.f95, *.f03, *.f08,
+# *.f18, *.f, *.for, *.vhd, *.vhdl, *.ucf, *.qsf and *.ice.
 
 FILE_PATTERNS          = *.c \
                          *.cc \
@@ -1167,7 +1173,7 @@ FILTER_SOURCE_PATTERNS =
 # (index.html). This can be useful if you have a project on for instance GitHub
 # and want to reuse the introduction page also for the doxygen output.
 
-USE_MDFILE_AS_MAINPAGE = README-headless.md
+USE_MDFILE_AS_MAINPAGE = README-orig.md
 
 # The Fortran standard specifies that for fixed formatted Fortran code all
 # characters from position 72 are to be considered as comment. A common
@@ -1192,7 +1198,8 @@ FORTRAN_COMMENT_AFTER  = 72
 SOURCE_BROWSER         = NO
 
 # Setting the INLINE_SOURCES tag to YES will include the body of functions,
-# classes and enums directly into the documentation.
+# multi-line macros, enums or list initialized variables directly into the
+# documentation.
 # The default value is: NO.
 
 INLINE_SOURCES         = NO
@@ -1264,46 +1271,6 @@ USE_HTAGS              = NO
 
 VERBATIM_HEADERS       = NO
 
-# If the CLANG_ASSISTED_PARSING tag is set to YES then doxygen will use the
-# clang parser (see:
-# http://clang.llvm.org/) for more accurate parsing at the cost of reduced
-# performance. This can be particularly helpful with template rich C++ code for
-# which doxygen's built-in parser lacks the necessary type information.
-# Note: The availability of this option depends on whether or not doxygen was
-# generated with the -Duse_libclang=ON option for CMake.
-# The default value is: NO.
-
-CLANG_ASSISTED_PARSING = NO
-
-# If the CLANG_ASSISTED_PARSING tag is set to YES and the CLANG_ADD_INC_PATHS
-# tag is set to YES then doxygen will add the directory of each input to the
-# include path.
-# The default value is: YES.
-# This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES.
-
-CLANG_ADD_INC_PATHS    = YES
-
-# If clang assisted parsing is enabled you can provide the compiler with command
-# line options that you would normally use when invoking the compiler. Note that
-# the include paths will already be set by doxygen for the files and directories
-# specified with INPUT and INCLUDE_PATH.
-# This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES.
-
-CLANG_OPTIONS          =
-
-# If clang assisted parsing is enabled you can provide the clang parser with the
-# path to the directory containing a file called compile_commands.json. This
-# file is the compilation database (see:
-# http://clang.llvm.org/docs/HowToSetupToolingForLLVM.html) containing the
-# options used when the source files were built. This is equivalent to
-# specifying the -p option to a clang tool, such as clang-check. These options
-# will then be passed to the parser. Any options specified with CLANG_OPTIONS
-# will be added as well.
-# Note: The availability of this option depends on whether or not doxygen was
-# generated with the -Duse_libclang=ON option for CMake.
-
-CLANG_DATABASE_PATH    =
-
 #---------------------------------------------------------------------------
 # Configuration options related to the alphabetical class index
 #---------------------------------------------------------------------------
@@ -1480,6 +1447,33 @@ HTML_DYNAMIC_MENUS     = YES
 
 HTML_DYNAMIC_SECTIONS  = YES
 
+# If the HTML_CODE_FOLDING tag is set to YES then classes and functions can be
+# dynamically folded and expanded in the generated HTML source code.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_CODE_FOLDING      = YES
+
+# If the HTML_COPY_CLIPBOARD tag is set to YES then doxygen will show an icon in
+# the top right corner of code and text fragments that allows the user to copy
+# its content to the clipboard. Note this only works if supported by the browser
+# and the web page is served via a secure context (see:
+# https://www.w3.org/TR/secure-contexts/), i.e. using the https: or file:
+# protocol.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_COPY_CLIPBOARD    = YES
+
+# Doxygen stores a couple of settings persistently in the browser (via e.g.
+# cookies). By default these settings apply to all HTML pages generated by
+# doxygen across all projects. The HTML_PROJECT_COOKIE tag can be used to store
+# the settings under a project specific key, such that the user preferences will
+# be stored separately.
+# This tag requires that the tag GENERATE_HTML is set to YES.
+
+HTML_PROJECT_COOKIE    =
+
 # With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries
 # shown in the various tree structured indices initially; the user can expand
 # and collapse entries dynamically later on. Doxygen will expand the tree to
@@ -1702,7 +1696,7 @@ GENERATE_ECLIPSEHELP   = YES
 # The default value is: org.doxygen.Project.
 # This tag requires that the tag GENERATE_ECLIPSEHELP is set to YES.
 
-ECLIPSE_DOC_ID         = edu.harvard.cfa.SuperNOVAS
+ECLIPSE_DOC_ID         = edu.harvard.cfa.supernovas
 
 # If you want full control over the layout of the generated HTML pages it might
 # be necessary to disable the index and replace it with your own. The
@@ -1951,7 +1945,7 @@ SEARCHDATA_FILE        = searchdata.xml
 # projects and redirect the results back to the right project.
 # This tag requires that the tag SEARCHENGINE is set to YES.
 
-EXTERNAL_SEARCH_ID     = novas
+EXTERNAL_SEARCH_ID     = supernovas
 
 # The EXTRA_SEARCH_MAPPINGS tag can be used to enable searching through doxygen
 # projects other than the one defined by this configuration file, but that are
@@ -2108,7 +2102,7 @@ PDF_HYPERLINKS         = YES
 
 USE_PDFLATEX           = YES
 
-# The LATEX_BATCHMODE tag ignals the behavior of LaTeX in case of an error.
+# The LATEX_BATCHMODE tag signals the behavior of LaTeX in case of an error.
 # Possible values are: NO same as ERROR_STOP, YES same as BATCH, BATCH In batch
 # mode nothing is printed on the terminal, errors are scrolled as if <return> is
 # hit at every error; missing files that TeX tries to input or request from
@@ -2314,6 +2308,28 @@ GENERATE_AUTOGEN_DEF   = NO
 # Configuration options related to Sqlite3 output
 #---------------------------------------------------------------------------
 
+# If the GENERATE_SQLITE3 tag is set to YES doxygen will generate a Sqlite3
+# database with symbols found by doxygen stored in tables.
+# The default value is: NO.
+
+GENERATE_SQLITE3       = NO
+
+# The SQLITE3_OUTPUT tag is used to specify where the Sqlite3 database will be
+# put. If a relative path is entered the value of OUTPUT_DIRECTORY will be put
+# in front of it.
+# The default directory is: sqlite3.
+# This tag requires that the tag GENERATE_SQLITE3 is set to YES.
+
+SQLITE3_OUTPUT         = sqlite3
+
+# The SQLITE3_RECREATE_DB tag is set to YES, the existing doxygen_sqlite3.db
+# database file will be recreated with each doxygen run. If set to NO, doxygen
+# will warn if a database file is already found and not modify it.
+# The default value is: YES.
+# This tag requires that the tag GENERATE_SQLITE3 is set to YES.
+
+SQLITE3_RECREATE_DB    = YES
+
 #---------------------------------------------------------------------------
 # Configuration options related to the Perl module output
 #---------------------------------------------------------------------------
@@ -2456,15 +2472,15 @@ TAGFILES               =
 
 GENERATE_TAGFILE       = apidoc/novas.tag
 
-# If the ALLEXTERNALS tag is set to YES, all external class will be listed in
-# the class index. If set to NO, only the inherited external classes will be
-# listed.
+# If the ALLEXTERNALS tag is set to YES, all external classes and namespaces
+# will be listed in the class and namespace index. If set to NO, only the
+# inherited external classes will be listed.
 # The default value is: NO.
 
 ALLEXTERNALS           = NO
 
 # If the EXTERNAL_GROUPS tag is set to YES, all external groups will be listed
-# in the modules index. If set to NO, only the current project's groups will be
+# in the topic index. If set to NO, only the current project's groups will be
 # listed.
 # The default value is: YES.
 
@@ -2549,7 +2565,11 @@ DOT_FONTPATH           =
 # the CLASS_GRAPH tag is set to YES and HAVE_DOT is disabled or if the
 # CLASS_GRAPH tag is set to BUILTIN, then the built-in generator will be used.
 # If the CLASS_GRAPH tag is set to TEXT the direct and indirect inheritance
-# relations will be shown as texts / links.
+# relations will be shown as texts / links. Explicit enabling an inheritance
+# graph or choosing a different representation for an inheritance graph of a
+# specific class, can be accomplished by means of the command \inheritancegraph.
+# Disabling an inheritance graph can be accomplished by means of the command
+# \hideinheritancegraph.
 # Possible values are: NO, YES, TEXT, GRAPH and BUILTIN.
 # The default value is: YES.
 
@@ -2558,15 +2578,21 @@ CLASS_GRAPH            = YES
 # If the COLLABORATION_GRAPH tag is set to YES then doxygen will generate a
 # graph for each documented class showing the direct and indirect implementation
 # dependencies (inheritance, containment, and class references variables) of the
-# class with other documented classes.
+# class with other documented classes. Explicit enabling a collaboration graph,
+# when COLLABORATION_GRAPH is set to NO, can be accomplished by means of the
+# command \collaborationgraph. Disabling a collaboration graph can be
+# accomplished by means of the command \hidecollaborationgraph.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
 COLLABORATION_GRAPH    = YES
 
 # If the GROUP_GRAPHS tag is set to YES then doxygen will generate a graph for
-# groups, showing the direct groups dependencies. See also the chapter Grouping
-# in the manual.
+# groups, showing the direct groups dependencies. Explicit enabling a group
+# dependency graph, when GROUP_GRAPHS is set to NO, can be accomplished by means
+# of the command \groupgraph. Disabling a directory graph can be accomplished by
+# means of the command \hidegroupgraph. See also the chapter Grouping in the
+# manual.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
@@ -2608,8 +2634,8 @@ DOT_UML_DETAILS        = NO
 
 # The DOT_WRAP_THRESHOLD tag can be used to set the maximum number of characters
 # to display on a single line. If the actual line length exceeds this threshold
-# significantly it will wrapped across multiple lines. Some heuristics are apply
-# to avoid ugly line breaks.
+# significantly it will be wrapped across multiple lines. Some heuristics are
+# applied to avoid ugly line breaks.
 # Minimum value: 0, maximum value: 1000, default value: 17.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
@@ -2626,7 +2652,9 @@ TEMPLATE_RELATIONS     = NO
 # If the INCLUDE_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are set to
 # YES then doxygen will generate a graph for each documented file showing the
 # direct and indirect include dependencies of the file with other documented
-# files.
+# files. Explicit enabling an include graph, when INCLUDE_GRAPH is is set to NO,
+# can be accomplished by means of the command \includegraph. Disabling an
+# include graph can be accomplished by means of the command \hideincludegraph.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
@@ -2635,7 +2663,10 @@ INCLUDE_GRAPH          = YES
 # If the INCLUDED_BY_GRAPH, ENABLE_PREPROCESSING and SEARCH_INCLUDES tags are
 # set to YES then doxygen will generate a graph for each documented file showing
 # the direct and indirect include dependencies of the file with other documented
-# files.
+# files. Explicit enabling an included by graph, when INCLUDED_BY_GRAPH is set
+# to NO, can be accomplished by means of the command \includedbygraph. Disabling
+# an included by graph can be accomplished by means of the command
+# \hideincludedbygraph.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.
 
@@ -2675,7 +2706,10 @@ GRAPHICAL_HIERARCHY    = YES
 # If the DIRECTORY_GRAPH tag is set to YES then doxygen will show the
 # dependencies a directory has on other directories in a graphical way. The
 # dependency relations are determined by the #include relations between the
-# files in the directories.
+# files in the directories. Explicit enabling a directory graph, when
+# DIRECTORY_GRAPH is set to NO, can be accomplished by means of the command
+# \directorygraph. Disabling a directory graph can be accomplished by means of
+# the command \hidedirectorygraph.
 # The default value is: YES.
 # This tag requires that the tag HAVE_DOT is set to YES.