Spike Pattern Detection and Evaluation (SPADE)

[AuroreSB]

https://github.com/INM-6/elephant
Look at the documentation
--> https://elephant.readthedocs.io/en/latest/reference/spade.html

[laurentperrinet]

a technical description: https://www.research-collection.ethz.ch/bitstream/handle/20.500.11850/365739/1-s2.0-S030326471930053X-main.pdf

[laurentperrinet]

see also

Cell assemblies at multiple time scales with arbitrary lag constellations
Eleonora Russo (1), Daniel Durstewitz (1)

https://arxiv.org/pdf/1607.00969.pdf

[laurentperrinet]

an earlier description of SPADE is described in
https://www.frontiersin.org/articles/10.3389/fncom.2017.00041/full

[laurentperrinet]

for a review, see "3.2. Decoding neural activity using spike distances" in https://laurentperrinet.github.io/publication/grimaldi-22-polychronies/grimaldi-22-polychronies.pdf

[laurentperrinet]

see also

Cell assemblies at multiple time scales with arbitrary lag constellations
Eleonora Russo (1), Daniel Durstewitz (1)

https://arxiv.org/pdf/1607.00969.pdf

this method is also [available in elephant] !(https://elephant.readthedocs.io/en/latest/reference/cell_assembly_detection.html#cad-russo2017-e19428)

[laurentperrinet]

if you're using conda, consider using https://anaconda.org/conda-forge/pyfim to accelerate the mining using SPADE... (does not work on my arm64 version of macOS...)

@AntoineGrimaldi