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README.md

RAxML container

Main tool: raxmlHPC

Code repository: https://github.com/stamatak/standard-RAxML

Additional tools:

raxmlHPC-AVX
raxmlHPC-HYBRID
raxmlHPC-HYBRID-AVX
raxmlHPC-HYBRID-SSE3
raxmlHPC-MPI
raxmlHPC-MPI-AVX
raxmlHPC-MPI-SSE3
raxmlHPC-PTHREADS
raxmlHPC-PTHREADS-AVX
raxmlHPC-PTHREADS-SSE3
raxmlHPC-SSE3

Basic information on how to use this tool:

executable: raxmlHPC
help: -h
version: -v
description: A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies

Full documentation: https://github.com/stamatak/standard-RAxML/blob/master/manual/NewManual.pdf

Example Usage

raxmlHPC -s sequenceFileName -n outputFileName -m substitutionModel