v2.4.8

Changes

• [#1329] Added support for all SpatialPy output modes.
• [#1337] Updated dependencies.
• [#1338] Re-designed the reactions UI.
• [#1339] Re-designed the domain editor UI.
• [#1348] Added support for spatial geometries. in types.
• [#1350] Added a tab for adding particles using spatial geometries.

Bug Fixes

• [#1328] Fixed spelling errors.
• [#1339] Fixed issues caused by a missing plot when a domain contains no particles.

Full Changelog: v2.4.7...v2.4.8

v2.4.7

Changes

• [#1318] Added support for the GillesPy2 CLE solver.
• [#1316] Models and workflows in projects are now sorted by name.

Bug Fixes

• [#1319] Fixed issue with open links when targeting zip archives.
• [#1320] Fixed issue with models failing to run when end time is a float value.
• [#1323] Fixed issue with models not saving before creating jobs.

Full Changelog: v2.4.6...v2.4.7

v2.4.6

Changes

• [#1311]
  • Updated the GillesPy2 dependency
  • Updated the SpatialPy dependency

Bug Fixes

• Fixed issue with type name field not rendering
• Fixed issue with auto-reloading the model editor page on back navigation when using chrome
• Added .py extension to the accepted file types when uploading files using Safari v14.+

Full Changelog: v2.4.5...v2.4.6

v2.4.5

Changes

• Security updates.
• Added TauHybridCSolver for hybrid model with only rate rules and events.

Bug Fixes

• Fixed open links for job presentations.

v2.4.4

Changes

• Updated GillesPy2
• Security updates

v2.4.3

Changes

• Server options for user access privileges have been updated.

v2.4.2

Changes

• The browser section for presentations now displays the name and publish date for each presentation.
• Previews for models now use display live output.
• User logs can now be cleared.
• GillesPy2 and SpatialPy examples are now available here
• Updates to the SpatialPy and Sciope dependencies.

Bug Fixes

• Fixed issue with copy button for notebook presentations.
• Fixed issue with the context menu for notebooks in projects.
• Fixed issue with spaces not being removed from classnames when generating notebooks.
• Fixed issue with uploading StochSS Models in Projects.
• Fixed issue with add existing models to project.
• Removed model presentations from projects add existing models list.
• Fixed issue with tokens being added to file names when open links are used.
• Fixed plotting for 2D domains.

v2.4.1

Bug Fixes

• Fixed download and open links on presentation pages

v2.4

Changes

• Users can publish completed jobs in a read only context.
• Updated the file browser page.
• Users can manage their presentations on their browser page.
• Added documentation to the simulation settings section.
• Added StochSS Favicon.
• Users can now overwrite files when uploading using open links.

Bug Fixes

• Fixed issue with model error not displaying to the user.
• Fixed error propagation for presentations.
• Local hubs can now be launched with 1 - 2 allocated cores.

v2.3.12

Changes

• Added addition notations to the rules section.
• Users can now opt-out of having a type code in their workflow name.
• Launching local builds of StochSS will now automatically open the web browser on build completion.
• Improved the Model Editor page to auto focus on errors when fixing models.

Bug Fixes

• Clicking logo now navigates to the correct location.
• NPM no longer installs or runs on the host machine.
• Fixed issue preventing the creation of new workflows in projects.