Project 1: 3D Geometry-Based Tissue Block Annotation: Collision Detection between Tissue Blocks and Anatomical Structures
Code: https://github.com/hubmapconsortium/ccf-tissue-block-annotation
Paper: https://dl.acm.org/doi/abs/10.1145/3557917.3567618
Project 2: Specimen, Biological Structure, and Spatial Ontologies in Support of a Human Reference Atlas
Paper: https://www.biorxiv.org/content/10.1101/2022.09.08.507220v1
Project 3 (On-going): CTPop - Computing and visualizing cell type populations for the Human Reference Atlas
Code: https://github.com/LuchenCatherine/ccf-cell-generation, https://github.com/LuchenCatherine/3d-corridor