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Existing pieces of software that could be integrated #9

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Stortebecker opened this issue Apr 5, 2017 · 2 comments
Open

Existing pieces of software that could be integrated #9

Stortebecker opened this issue Apr 5, 2017 · 2 comments
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enhancement possible student project

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@Stortebecker
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Stortebecker commented Apr 5, 2017 •
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Here, I want you to post pieces of (open-source) software that could be integrated into Galaxy. To make a start:

  • MSeasy R Package - GC-MS preprocessing in R, integrates the NIST MS Search software (version 2.0+)
  • NIST MS PepSearch - Fiehn Lab: Free (open source?) commandline clone of NIST MS Search. Performs MS/MS batch scoring with a slightly different algorithm than NIST MS Search.
  • PyNISTPL - Edwards Lab: "interfaces to the NIST MS Search Engine libraries to provide easy to use command-line searching and construction of peptide spectrum libraries"
@Stortebecker Stortebecker mentioned this issue Apr 5, 2017
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@Stortebecker
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NIST MS Search seems to have an API as well, thus it could be integrated. It is not open source, but many people seem to work with it.

@Stortebecker
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MassBank (EU) software

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