template.yaml

name: My Example Phenotype
type: 2
sex: 3
event_date_range: 01/01/2020 - 31/10/2020
author: Author 1, Author 2, Author 3 et al.
phenoflowid: 1
definition: |-
  # Header
  Defining a phenotype... feel free to use markdown!

  ## Subheader
  Details about my phenotype...
implementation: |-
  # Header
  Algorithm details...

  ## Subheader
  Extra details...
validation: |-
  # Header
  Validation details...

  ## Subheader
  Extra details...
concept_information:
- name: Import an already existing concept
  type: existing_concept
  concept_id: 714
  concept_version_id: 2567
- name: Create a new concept from a csv file
  type: csv
  coding_system: 4
  code_column: Code
  description_column: Description
  filepath: C:/users/ieuan/desktop/codes.csv
ontology:
 - 50323
 - 'icd9:569.82'
 - 'snomed:420764009'
publications:
 - 'first publication, https://doi.org/10.3945/jn.109.117093'
 - 'second publication, https://doi.org/10.3945/jn.109.117093'
collections:
- 18
- 20
tags:
- 4
data_sources:
- 3
- 4
world_access: 1
template:
  id: 1
  version_id: 1