Merge pull request #130 from SyneRBI/skip-data #238
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name: run | |
on: | |
push: | |
branches: ['**'] | |
tags: ['**'] | |
paths-ignore: ['.gitignore', 'LICENSE*', 'LICENCE*', 'README.md', 'SIRF_data_preparation/*'] | |
jobs: | |
check: | |
runs-on: ubuntu-latest | |
container: | |
image: ghcr.io/synerbi/sirf:edge | |
options: --user root # https://github.com/actions/checkout/issues/956 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Install dependencies | |
shell: bash -el {0} | |
run: | | |
source /opt/SIRF-SuperBuild/INSTALL/bin/env_sirf.sh | |
pip install git+https://github.com/TomographicImaging/Hackathon-000-Stochastic-QualityMetrics | |
if test -f apt.txt; then | |
sudo apt-get update | |
xargs -a apt.txt sudo apt-get install -y | |
fi | |
if test -f environment.yml; then | |
sed -i '/^name:.*/d' environment.yml | |
conda env update -n base | |
fi | |
if test -f requirements.txt; then | |
pip install -r requirements.txt | |
fi | |
conda list | |
- name: Test imports | |
shell: bash -el {0} | |
run: | | |
source /opt/SIRF-SuperBuild/INSTALL/bin/env_sirf.sh | |
curl -fsSL https://raw.githubusercontent.com/SyneRBI/PETRIC/main/petric.py > petric.py | |
test -f main.py || ln -s main_ISTA.py main.py | |
python <<EOF | |
from main import Submission, submission_callbacks | |
from cil.optimisation.algorithms import Algorithm | |
assert issubclass(Submission, Algorithm) | |
assert isinstance(submission_callbacks, list) | |
assert all(callable(callback) for callback in submission_callbacks) | |
EOF | |
full: | |
if: startsWith(github.ref, 'refs/tags') | |
runs-on: [self-hosted, docker, cuda] | |
steps: | |
- uses: actions/checkout@v4 | |
with: {fetch-depth: 0, submodules: recursive} | |
- run: petric |