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GECKO 3.0.2
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@edkerk edkerk released this 21 Mar 09:47
· 80 commits to main since this release
v3.0.2
4b2a7e4
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Learn about vigilant mode.
  • Documentation:
    • Clarifications and fixes in protocol.m (solves #279, #287).
    • Protein concentrations (in model.ec.concs and proteomics data) are in mg/gDCW.
  • Fix:
    • Correct calculation of new protein pool if constrained with proteomics, by considering the total amount of measured protein.
    • getStandardKcat can use data/pseudoRxns.tsv as input of reactions to ignore, it overwrites previous standard Kcat definitions, and specifies model.ec.source{i} = 'standard' if a standard kcat is assigned to a zero-kcat reaction (solves #280, #286)
    • Various bugfixes in fuzzyKcatMatching (solves #277), readDLKcatOutput (solves #278), getECfromDatabase (solves #281), sensitivityTuning (solves #285), & applyCustomKcats (solves #291).
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