diff --git a/CMakeLists.txt b/CMakeLists.txt
index e149cc84..bc3ee2f7 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -20,7 +20,7 @@
 CMAKE_MINIMUM_REQUIRED(VERSION 3.9)
 
 cmake_policy(SET CMP0048 NEW)
-PROJECT(Galaxy VERSION 0.2.0)
+PROJECT(Galaxy VERSION 0.2.1)
 
 set(GALAXY_VERSION ${PROJECT_VERSION})
 set(GALAXY_SOVERSION ${PROJECT_VERSION_MAJOR})
diff --git a/CONTRIBUTORS.md b/CONTRIBUTORS.md
index 95357341..3e95ee9c 100644
--- a/CONTRIBUTORS.md
+++ b/CONTRIBUTORS.md
@@ -4,5 +4,6 @@
 * Paul Navratil, Texas Advanced Computing Center
 * David Rogers, Los Alamos National Laboratory
 * Dave Semeraro, Texas Advanced Computing Center
+* Krishna Kumar, The University of Texas at Austin
 
 
diff --git a/Doxyfile b/Doxyfile
index 9c460dbf..e99485d9 100644
--- a/Doxyfile
+++ b/Doxyfile
@@ -38,7 +38,7 @@ PROJECT_NAME           = "Galaxy"
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = 0.9.0
+PROJECT_NUMBER         = 0.2.1
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a
@@ -1115,7 +1115,7 @@ GENERATE_HTML          = YES
 # The default directory is: html.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-HTML_OUTPUT            = ./docs
+HTML_OUTPUT            = docs/html
 
 # The HTML_FILE_EXTENSION tag can be used to specify the file extension for each
 # generated HTML page (for example: .htm, .php, .asp).
@@ -1659,7 +1659,7 @@ GENERATE_LATEX         = YES
 # The default directory is: latex.
 # This tag requires that the tag GENERATE_LATEX is set to YES.
 
-LATEX_OUTPUT           = doc/latex
+LATEX_OUTPUT           = docs/latex
 
 # The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
 # invoked.
diff --git a/README.md b/README.md
index 9cca42da..140f1ad5 100644
--- a/README.md
+++ b/README.md
@@ -6,7 +6,7 @@
 Galaxy is an asynchronous parallel visualization framework for ray-based operations, including ray tracing, sampling and volume integration. Galaxy has been designed for performance in distributed computing environments, including in situ use. Galaxy builds upon [Intel OSPRay][1] and [Intel Embree][2] and includes ray queueing and sending logic inspired by [TACC GraviT][3]. 
 
 Galaxy has been developed primarily by Greg Abram and Paul Navratil with funding from the US Department of Energy's Office of Science ASCR program (Drs. Lucy Nowell and Laura Biven, program managers) through sub-award from Los Alamos National Laboratory; from Intel Corporation through Intel Parallel Computing Center awards; and from the Texas Advanced Computing Center at the University of Texas at Austin.
-A full list of contributors can be found in the `CONTRIBUTORS` file.
+A full list of contributors can be found in the [`CONTRIBUTORS`][./CONTRIBUTORS.md] file.
 
 Galaxy is licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License. A copy of the License is included with this software in the file `LICENSE`. If your copy does not contain the License, you may obtain a copy of the License at: [Apache License Version 2.0][15]. 
@@ -439,5 +439,5 @@ The following environment variables affect Galaxy behavior:
 [16]: http://rapidjson.org/
 [17]: https://cinemascience.org/
 [18]: https://www.python.org/
-[19]: 
+
 
diff --git a/RELEASE_NOTES.md b/RELEASE_NOTES.md
index c3b72c5f..1ea26d09 100644
--- a/RELEASE_NOTES.md
+++ b/RELEASE_NOTES.md
@@ -1,5 +1,10 @@
 # Galaxy Release Notes
 
+## version 0.2.1 - 20190325
+
+* Moved Doxygen to root Galaxy directory
+* Fixed includes for Fedora 29 build
+
 ## version 0.2.0 - 20190208
 
 Refactorization of Galaxy core to cleanly partition framework, data, and renderer layers. Initial release of multiserver modularization of Galaxy framework.
diff --git a/doc/configuration_files.md b/docs/configuration_files.md
similarity index 100%
rename from doc/configuration_files.md
rename to docs/configuration_files.md
diff --git a/doc/design.md b/docs/design.md
similarity index 100%
rename from doc/design.md
rename to docs/design.md