diff --git a/template_analysis/plusminus_template.m b/template_analysis/plusminus_template.m index 9dfd8e3..fe9cb6b 100755 --- a/template_analysis/plusminus_template.m +++ b/template_analysis/plusminus_template.m @@ -28,18 +28,21 @@ % If your distribution is more complex or less complex, you can change the number of components % AP=setNumGaussianComponents(AP,3); -% Make a map of the batches of plus/minus comparisons to test +% Make a map of the batches comparisons to test, add in a list of batch +% names (e.g., {'+', '-'}) to signify possible sets. % This analysis supports two variables: a +/- variable and a "tuning" variable stem1011 = '../example_assay/LacI-CAGop_'; batch_description = {... - {'Lows';'BaseDox'; + {'Lows';'BaseDox';{'+', '-', 'control'}; % First set is the matching "plus" conditions - {0.1, {[stem1011 'B9_B09_P3.fcs']}; % Replicates go here, e.g., {[rep1], [rep2], [rep3]} - 0.2, {[stem1011 'B10_B10_P3.fcs']}}; + {0.1, {[stem1011 'C3_C03_P3.fcs']}; % Replicates go here, e.g., {[rep1], [rep2], [rep3]} + 0.2, {[stem1011 'C4_C04_P3.fcs']}}; % Second set is the matching "minus" conditions {0.1, {[stem1011 'B3_B03_P3.fcs']}; - 0.2, {[stem1011 'B4_B04_P3.fcs']}}}; - {'Highs';'BaseDox'; + 0.2, {[stem1011 'B4_B04_P3.fcs']}}; + {0.1, {[stem1011 'B9_B09_P3.fcs']}; % Replicates go here, e.g., {[rep1], [rep2], [rep3]} + 0.2, {[stem1011 'B10_B10_P3.fcs']}}}; + {'Highs';'BaseDox';{'+', '-'}; {10, {[stem1011 'C3_C03_P3.fcs']}; 20, {[stem1011 'C4_C04_P3.fcs']}}; {10, {[stem1011 'B9_B09_P3.fcs']}; @@ -55,7 +58,7 @@ TASBEConfig.set('OutputSettings.StemName',batch_description{i}{1}); TASBEConfig.set('OutputSettings.DeviceName',device_name); TASBEConfig.set('OutputSettings.PlotTickMarks',1); - plot_plusminus_comparison(results{i}) + plot_plusminus_comparison(results{i}, batch_description{i}{3}); end save('-V7','LacI-CAGop-plus-minus.mat','batch_description','AP','results'); diff --git a/template_analysis/transfercurve_template.m b/template_analysis/transfercurve_template.m index 73e89e5..3c2e42d 100644 --- a/template_analysis/transfercurve_template.m +++ b/template_analysis/transfercurve_template.m @@ -59,6 +59,7 @@ % Plot how the constitutive fluorescence was distributed TASBEConfig.set('OutputSettings.DeviceName',device_name); +TASBEConfig.set('histogram.displayLegend',false); plot_bin_statistics(sampleresults); % Plot the relation between inducer and input fluorescence