diff --git a/isopret-cli/pom.xml b/isopret-cli/pom.xml
index c0a5a15..4938672 100644
--- a/isopret-cli/pom.xml
+++ b/isopret-cli/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.jax.isopret</groupId>
         <artifactId>isopret</artifactId>
-        <version>1.3.0</version>
+        <version>1.3.1</version>
     </parent>
 
     <artifactId>isopret-cli</artifactId>
diff --git a/isopret-core/pom.xml b/isopret-core/pom.xml
index edce898..e271f54 100644
--- a/isopret-core/pom.xml
+++ b/isopret-core/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.jax.isopret</groupId>
         <artifactId>isopret</artifactId>
-        <version>1.3.0</version>
+        <version>1.3.1</version>
     </parent>
 
     <artifactId>isopret-core</artifactId>
diff --git a/isopret-core/src/main/java/module-info.java b/isopret-core/src/main/java/module-info.java
index 2b1c59f..b20c6c4 100644
--- a/isopret-core/src/main/java/module-info.java
+++ b/isopret-core/src/main/java/module-info.java
@@ -16,7 +16,6 @@
     exports org.jax.isopret.visualization;
     exports org.jax.isopret.core;
     exports org.jax.isopret.core.impl.interpro;
-    //exports org.jax.isopret.core.impl.hgnc;
     exports org.jax.isopret.core.impl.go;
     exports org.jax.isopret.core.impl.hgnc;
 
diff --git a/isopret-data/pom.xml b/isopret-data/pom.xml
index d971191..954219c 100644
--- a/isopret-data/pom.xml
+++ b/isopret-data/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.jax.isopret</groupId>
         <artifactId>isopret</artifactId>
-        <version>1.3.0</version>
+        <version>1.3.1</version>
     </parent>
 
     <artifactId>isopret-data</artifactId>
diff --git a/isopret-exception/pom.xml b/isopret-exception/pom.xml
index 8938bab..2e54ffb 100644
--- a/isopret-exception/pom.xml
+++ b/isopret-exception/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.jax.isopret</groupId>
         <artifactId>isopret</artifactId>
-        <version>1.3.0</version>
+        <version>1.3.1</version>
     </parent>
 
     <artifactId>isopret-exception</artifactId>
diff --git a/isopret-gui/pom.xml b/isopret-gui/pom.xml
index 27a9675..a8445c6 100644
--- a/isopret-gui/pom.xml
+++ b/isopret-gui/pom.xml
@@ -9,7 +9,7 @@
     <parent>
         <groupId>org.jax.isopret</groupId>
         <artifactId>isopret</artifactId>
-        <version>1.3.0</version>
+        <version>1.3.1</version>
     </parent>
 
     <artifactId>isopret-gui</artifactId>
diff --git a/isopret-gui/src/main/java/module-info.java b/isopret-gui/src/main/java/module-info.java
index 2b8797d..5f56d53 100644
--- a/isopret-gui/src/main/java/module-info.java
+++ b/isopret-gui/src/main/java/module-info.java
@@ -33,8 +33,6 @@
     exports org.jax.isopret.gui.service.impl to spring.beans, spring.core;
     exports org.jax.isopret.gui.controller to spring.beans, spring.context;
 
-
-
     opens org.jax.isopret.gui to spring.core;
     opens org.jax.isopret.gui.configuration to spring.core;
     opens org.jax.isopret.gui.controller to spring.core;
diff --git a/isopret-io/pom.xml b/isopret-io/pom.xml
index d559363..0aefd90 100644
--- a/isopret-io/pom.xml
+++ b/isopret-io/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.jax.isopret</groupId>
         <artifactId>isopret</artifactId>
-        <version>1.3.0</version>
+        <version>1.3.1</version>
     </parent>
     <packaging>jar</packaging>
     <artifactId>isopret-io</artifactId>
diff --git a/pom.xml b/pom.xml
index 4a51a7f..6528fcd 100644
--- a/pom.xml
+++ b/pom.xml
@@ -6,11 +6,11 @@
     <parent>
         <groupId>org.springframework.boot</groupId>
         <artifactId>spring-boot-starter-parent</artifactId>
-        <version>3.2.0</version>
+        <version>3.3.0</version>
     </parent>
     <groupId>org.jax.isopret</groupId>
     <artifactId>isopret</artifactId>
-    <version>1.3.0</version>
+    <version>1.3.1</version>
     <modules>
         <module>isopret-core</module>
         <module>isopret-cli</module>
@@ -128,7 +128,7 @@
                 <plugin>
                     <groupId>org.apache.maven.plugins</groupId>
                     <artifactId>maven-javadoc-plugin</artifactId>
-                    <version>3.2.0</version>
+                    <version>3.6.3</version>
                     <configuration>
                         <javadocExecutable>${java.home}/bin/javadoc</javadocExecutable>
                         <doclint>none</doclint>
@@ -146,7 +146,7 @@
                 <plugin>
                     <groupId>org.apache.maven.plugins</groupId>
                     <artifactId>maven-source-plugin</artifactId>
-                    <version>3.2.1</version>
+                    <version>3.3.1</version>
                     <executions>
                         <execution>
                             <id>attach-sources</id>
@@ -160,7 +160,7 @@
                 <plugin>
                     <groupId>org.apache.maven.plugins</groupId>
                     <artifactId>maven-compiler-plugin</artifactId>
-                    <version>3.8.1</version>
+                    <version>3.13.0</version>
                     <configuration>
                         <source>${java.version}</source>
                         <target>${java.version}</target>
@@ -169,7 +169,7 @@
                 <plugin>
                     <groupId>org.apache.maven.plugins</groupId>
                     <artifactId>maven-surefire-plugin</artifactId>
-                    <version>3.0.0-M5</version>
+                    <version>3.2.3</version>
                 </plugin>
             </plugins>
         </pluginManagement>
@@ -179,7 +179,7 @@
             <plugin>
                 <groupId>org.codehaus.mojo</groupId>
                 <artifactId>versions-maven-plugin</artifactId>
-                <version>2.7</version>
+                <version>2.16.2</version>
                 <configuration>
                     <generateBackupPoms>false</generateBackupPoms>
                 </configuration>