-
Notifications
You must be signed in to change notification settings - Fork 1
/
hao.ttl
1315 lines (1167 loc) · 63.4 KB
/
hao.ttl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix obi: <http://purl.obolibrary.org/obo/OBI_> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix sio: <http://semanticscience.org/resource/> .
@prefix stato: <http://purl.obolibrary.org/obo/STATO_> .
@prefix obcs: <http://purl.obolibrary.org/obo/OBCS_> .
@prefix ncit: <http://purl.obolibrary.org/obo/NCIT_> .
@prefix oboInOwl: <http://www.geneontology.org/formats/oboInOwl#> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix hao: <https://purl.org/heals/hao/> .
@prefix : <https://purl.org/heals/hao/> .
<https://purl.org/heals/hao/>
rdf:type owl:Ontology ;
dct:title "Health Analysis Ontology"^^xsd:string ;
dct:creator "Sabbir M. Rashid"^^xsd:string, "Alexander New"^^xsd:string, "Miao Qi"^^xsd:string,"Shruthi Chari"^^xsd:string, "John S. Erickson"^^xsd:string, "Deborah L. McGuinness"^^xsd:string, "Kristin P. Bennett"^^xsd:string ;
dct:created "2018-05-15T12:00:00"^^xsd:dateTime ;
dct:modified "2019-08-27T14:30:00"^^xsd:dateTime ;
dct:description "The Health Analysis Ontology includes attributes useful for informing analysis design, summarizing analysis results for later comparison, and for generating reports. It captures the data domain and analysis workflow in cartridges that represent domain knowledge, analytics knowledge, and other components of the analysis pipeline"^^xsd:string ;
owl:imports
<http://semanticscience.org/ontology/sio-subset-labels.owl>;
dct:license <http://www.apache.org/licenses/LICENSE-2.0> ;
owl:versionIRI <https://purl.org/heals/hao/0.9/> .
# count
sio:Count rdf:type owl:Class ;
rdfs:label "count"^^xsd:string ;
dct:description "The number of elements of a finite set of objects."^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:DimensionlessQuantity.
sio:DimensionlessQuantity rdf:type owl:Class ;
rdfs:label "dimensionless quantity"^^xsd:string ;
dct:description "A dimensionless quantity is a quantity that has no associated unit."^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Quantity.
# Max
sio:MaximalValue rdf:type owl:Class ;
rdfs:label "maximal value"^^xsd:string ;
dct:description "A maximal value is largest value of an attribute for the entities in the defined set."^^xsd:string;
sio:hasSynonym "max"^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Quantity.
# Min
sio:MinimalValue rdf:type owl:Class ;
rdfs:label "minimal value"^^xsd:string ;
dct:description "A minimal value is smallest value of an attribute for the entities in the defined set."^^xsd:string;
sio:hasSynonym "min"^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Quantity.
# Mode
sio:Mode rdf:type owl:Class ;
rdfs:label "mode"^^xsd:string ;
dct:description "A mode is the value that appears most often in a set of data."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:CentralityMeasure .
sio:CentralityMeasure rdf:type owl:Class ;
rdfs:label "centrality measure"^^xsd:string ;
dct:description "A central tendency measure is a central value or a typical value for a probability distribution."^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Quantity.
sio:Conjunctionand rdf:type owl:Class ;
rdfs:label "conjunction (and)"^^xsd:string ;
dct:description "AND is a logical operator that has the value true if both of its operands are true, otherwise a value of false."^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:LogicalOperator.
sio:LogicalOperator rdf:type owl:Class ;
rdfs:label "logical operator"^^xsd:string ;
dct:description "A logical operator is a unary or binary relation to construct logical expressions."^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:MathematicalEntity.
sio:Quantity rdf:type owl:Class ;
rdfs:label "quantity"^^xsd:string ;
dct:description "A quantity is an informational entity that gives the magnitude of a property."^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:MeasurementValue.
sio:MeasurementValue rdf:type owl:Class ;
rdfs:label "measurement value"^^xsd:string ;
dct:description "A measurement value is a quantitative description that reflects the magnitude of some attribute."^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Number.
# Mean
sio:Mean rdf:type owl:Class ;
rdfs:label "mean"^^xsd:string ;
dct:description "A mean is the central tendency of a collection of numbers taken as the sum of the numbers divided by the size of the collection."^^xsd:string;
sio:hasSynonym "arithmeritic mean"^^xsd:string;
sio:hasSynonym "average"^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:CentralityMeasure .
# Number
sio:Number rdf:type owl:Class ;
rdfs:label "number"^^xsd:string ;
dct:description "A number is a mathematical object used to count, label, and measure."^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:MathematicalEntity .
# Algorithm
sio:Algorithm rdf:type owl:Class ;
rdfs:label "algorithm"^^xsd:string ;
dct:description "An algorithm is an effective method expressed as a finite list of well-defined instructions for calculating a function."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:MathematicalEntity .
# Mathematical Entity
sio:MathematicalEntity rdf:type owl:Class ;
rdfs:label "mathematical entity"^^xsd:string ;
dct:description "A mathematical entity is an information content entity that are components of a mathematical system or can be defined in mathematical terms."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:InformationContentEntity .
sio:InformationContentEntity rdf:type owl:Class ;
rdfs:label "information content entity"^^xsd:string ;
dct:description "Information content entity is an object that requires some background knowledge or procedure to correctly interpret."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Object .
sio:Object rdf:type owl:Class ;
rdfs:label "object"^^xsd:string ;
dct:description "An object is an entity that is wholly identifiable at any instant of time during which it exists."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Entity .
# Likelihood
sio:Likelihood rdf:type owl:Class ;
rdfs:label "likelihood"^^xsd:string ;
dct:description "Likelihood is the hypothetical probability that an event that has already occurred would yield a specific outcome."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Quantity.
# Control Variable
sio:ControlVariable rdf:type owl:Class ;
rdfs:label "control variable"^^xsd:string ;
dct:description " A control variable that is believed to alter the dependent or independent variables, but may not actually be the focus of the experiment. So that variable will be kept constant or monitored to try to minimise its effect on the experiment."^^xsd:string ;
sio:hasSynonym "controlled variable"^^xsd:string;
sio:hasSynonym "extraneous variable"^^xsd:string;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Variable .
# Variable
sio:Variable rdf:type owl:Class ;
rdfs:label "variable"^^xsd:string ;
dct:description "A variable is a value that may change within the scope of a given problem or set of operations."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasProperty ;
owl:someValuesFrom ncit:C42645
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:BaseRate
],
[
a owl:Restriction ;
owl:onProperty sio:hasProperty ;
owl:someValuesFrom obi:0200000
], sio:MathematicalEntity .
# p-value
obi:0000175 rdf:type owl:Class ;
rdfs:label "p-value"^^xsd:string ;
skos:definition "A quantitative confidence value that represents the probability of obtaining a result at least as extreme as that actually obtained, assuming that the actual value was the result of chance alone."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/OBI_0000175>;
rdfs:subClassOf sio:InformationContentEntity .
# FWER adjusted p-value (BH p-value)
obi:0001265 rdf:type owl:Class ;
rdfs:label "FWER adjusted p-value"^^xsd:string ;
skos:definition "A quantitative confidence value resulting from a multiple testing error correction method which adjusts the p-value used as input to control for Type I error in the context of multiple pairwise tests."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/OBI_0001265>;
rdfs:subClassOf sio:InformationContentEntity .
# data transformation
obi:0200000 rdf:type owl:Class ;
rdfs:label "data transformation"^^xsd:string ;
skos:definition "A planned process that produces output data from input data."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/OBI_0200000>;
rdfs:subClassOf sio:Process .
# Process
sio:Process rdf:type owl:Class ;
rdfs:label "process"^^xsd:string ;
dct:description "A process is an entity that is identifiable only through the unfolding of time, has temporal parts, and unless otherwise specified/predicted, cannot be identified from any instant of time in which it exists."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Entity .
# scale factors transformation
hao:Standardization rdf:type owl:Class ;
rdfs:label "Standardization Transformation"^^xsd:string ;
skos:definition "Mathematical transformation is applied to univariate random variables. The transformed distribution is shifted and scaled so it has a mean of zero and a variance of one."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf obi:0200000 .
# logarithmic transformation
obi:0200094 rdf:type owl:Class ;
rdfs:label "logarithmic transformation"^^xsd:string ;
skos:definition "A logarithmic transformation is a data transformation consisting in the application of the logarithm function with a given base a (where a>0 and a is not equal to 1) to a (one dimensional) positive real number input. The logarithm function with base a can be defined as the inverse of the exponential function with the same base. See e.g. http://en.wikipedia.org/wiki/Logarithm."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/OBI_0200094>;
rdfs:subClassOf obi:0200000 .
# regression coefficient
stato:0000565 rdf:type owl:Class ;
rdfs:label "regression coefficient"^^xsd:string ;
skos:definition "A regression coefficient is a data item generated by a type of data transformation called a regression, which aims to model a response variable by expression the predictor variables as part of a function where variable terms are modified by a number. A regression coefficient is one such number."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000565>;
rdfs:subClassOf sio:InformationContentEntity .
# nObs - study group population size
stato:0000088 rdf:type owl:Class ;
rdfs:label "study group population size"^^xsd:string ;
skos:definition "Statistical sample size is a count evaluating the number of individual experimental units."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000088>;
rdfs:subClassOf sio:Count .
# standard error of estimate
stato:0000562 rdf:type owl:Class ;
rdfs:label "standard error of estimate"^^xsd:string ;
skos:definition "It is a measure of how precise is an estimate of the statistical parameter is.Standard error is the estimated standard deviation of an estimate. It measures the uncertainty associated with the estimate. Compared with the standard deviations of the underlying distribution, which are usually unknown, standard errors can be calculated from observed data."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000562>;
rdfs:subClassOf sio:Quantity.
# standard error of the mean
stato:0000037 rdf:type owl:Class ;
rdfs:label "standard error of the mean"^^xsd:string ;
skos:definition "The standard error of the mean (SEM) is data item denoting the standard deviation of the sample-mean's estimate of a population mean.It is calculated by dividing the sample standard deviation (i.e., the sample-based estimate of the standard deviation of the population) by the square root of n , the size (number of observations) of the sample."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000037>;
rdfs:subClassOf sio:Quantity.
# standard deviation
stato:0000237 rdf:type owl:Class ;
rdfs:label "standard deviation"^^xsd:string ;
skos:definition "The standard deviation of a random variable, statistical population, data set, or probability distribution is a measure of variation which correspond to the average distance from the mean of the data set to any given point of that dataset. It also corresponds to the square root of its variance."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000237>;
rdfs:subClassOf sio:Quantity.
# variable
stato:0000258 rdf:type owl:Class ;
rdfs:label "variable"^^xsd:string ;
skos:definition "A variable is a data item which can assume any of a set of values, either as determined by an agent or as randomly occuring through observation."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000258>;
rdfs:subClassOf sio:Variable .
# continuous variable
stato:0000251 rdf:type owl:Class ;
rdfs:label "continuous variable"^^xsd:string ;
skos:definition "A continuous variable is one for which, within the limits the variable ranges, any value is possible."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000251>;
rdfs:subClassOf stato:0000258 .
# binary variable
hao:BinaryVariable rdf:type owl:Class ;
rdfs:label "binary variable"^^xsd:string ;
skos:definition "A binary variable is a variable taking values of 0 and 1."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf stato:0000258 .
# categorical variable
stato:0000252 rdf:type owl:Class ;
rdfs:label "categorical variable"^^xsd:string ;
skos:definition "A categorical variable is a variable which that can only assume a finite number of value and cast observation in a small number of categories."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000252>;
rdfs:subClassOf stato:0000258 .
# regression model
stato:0000390 rdf:type owl:Class ;
rdfs:label "regression model"^^xsd:string ;
skos:definition "A regression model is a statistical model used in a type of analysis knowns as regression analysis, whereby a function is used to determine the relation between a response variable and an independent variable , with a set of unknown parameters."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000390>;
rdfs:subClassOf sio:Model .
sio:Model rdf:type owl:Class ;
rdfs:label "model"^^xsd:string ;
dct:description "A model is a representation of some thing."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:Hyperparameter
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:Parameter
],
[
a owl:Restriction ;
owl:onProperty sio:hasComponentPart ;
owl:someValuesFrom sio:Variable
],
[
a owl:Restriction ;
owl:onProperty sio:hasComponentPart ;
owl:someValuesFrom ncit:C73619
], sio:Representation .
sio:Representation rdf:type owl:Class ;
rdfs:label "representation"^^xsd:string ;
dct:description "A representation is a entity that in some way represents another entity (or attribute thereof)."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:InformationContentEntity .
# binomial logistic regression for analysis of dichotomous dependent variable
stato:0000149 rdf:type owl:Class ;
rdfs:label "binomial logistic regression for analysis of dichotomous dependent variable"^^xsd:string ;
skos:definition "Binomial logistic regression model is a model which attempts to explain data distribution associated with *dichotomous* response/dependent variable in terms of values assumed by the independent variable uses a function of predictor/independent variable(s): the function used in this instance of regression modeling is logistic function."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000149>;
rdfs:subClassOf stato:0000390 .
# linear regression for analysis of continuous dependent variable
stato:0000108 rdf:type owl:Class ;
rdfs:label "linear regression for analysis of continuous dependent variable"^^xsd:string ;
skos:definition "Linear regression model is a model which attempts to explain data distribution associated with response/dependent variable in terms of values assumed by the independent variable uses a linear function or linear combination of the regression parameters and the predictor/independent variable(s).Linear regression modeling makes a number of assumptions, which includes homoskedasticity (constance of variance)."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000108>;
rdfs:subClassOf stato:0000390 .
# confounding variable specification
obcs:0000039 rdf:type owl:Class ;
rdfs:label "confounding variable specification"^^xsd:string ;
skos:definition "A variable specification that specifies a variable that may have a causal impact on both the independent variable and dependent variable; ignoring a confounding variable may bias empirical estimates of the causal effect of the independent variable."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/OBCS_0000039>;
rdfs:subClassOf sio:InformationContentEntity .
# data distribution
stato:0000161 rdf:type owl:Class ;
rdfs:label "data distribution"^^xsd:string ;
skos:definition "Variable distribution is data item which denotes the spatial resolution of data point making up a variable. variable distribution may be compared to a known probability distribution using goodness of fit test or plotting a quantile-quantile plot for visual assessment of the fit."^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000161>;
rdfs:subClassOf sio:InformationContentEntity .
# normal distribution
stato:0000227 rdf:type owl:Class ;
rdfs:label "normal distribution"^^xsd:string ;
skos:definition "A normal distribution is a continuous probability distribution described by a probability distribution function described here: http://mathworld.wolfram.com/NormalDistribution.html"^^xsd:string ;
rdfs:isDefinedBy <http://purl.obolibrary.org/obo/STATO_0000227>;
rdfs:subClassOf stato:0000161 .
hao:RightSkewed rdf:type owl:Class ;
rdfs:label "right skewed data distribution"^^xsd:string ;
skos:definition "A right skewed data distribution is a characteristic of univariate random variables denoting some sort of asymmetry in distribution. Often indicated by having a mean greater than the median, and a left-hand tail that is shorter than the right-hand tail."^^xsd:string ;
skos:example "Most environmental exposure risk factor distributions"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf stato:0000161 .
hao:LeftSkewed rdf:type owl:Class ;
rdfs:label "left skewed data distribution"^^xsd:string ;
skos:definition "A left skewed data distribution is a characteristic of univariate random variables denoting some sort of asymmetry in distribution. Often indicated by having a mean less than the median, and a right-hand tail that is longer than the left-hand tail."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf stato:0000161 .
hao:Component rdf:type owl:Class ;
rdfs:label "component"^^xsd:string ;
skos:definition "A component is a category of data tables in NHANES."^^xsd:string ;
skos:example "Laboratory"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:InformationContentEntity .
sio:Category rdf:type owl:Class ;
rdfs:label "category"^^xsd:string ;
dct:description "A category is a class of entities having particular shared characteristics."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Concept .
sio:Concept rdf:type owl:Class ;
rdfs:label "concept"^^xsd:string ;
dct:description "A concept is term that refers to a generalization of a set of attributes or entities."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Term .
sio:Term rdf:type owl:Class ;
rdfs:label "term"^^xsd:string ;
dct:description "A term is a word or phrase used to denote one or more entities."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Phrase .
sio:Phrase rdf:type owl:Class ;
rdfs:label "phrase"^^xsd:string ;
dct:description "A phrase is a group of words functioning as a single unit in the syntax of a sentence."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:LanguageEntity .
sio:LanguageEntity rdf:type owl:Class ;
rdfs:label "language entity"^^xsd:string ;
dct:description "A language entity implements some language specification for the visual interpretation and is part of some document."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:InformationContentEntity .
hao:RiskFactorCategory rdf:type owl:Class ;
rdfs:label "risk factor category"^^xsd:string ;
skos:definition "Risk factor category is a category of similar potential risk factors, where 'similarity' is defined by domain experts."^^xsd:string ;
skos:example "Polyaromatic hydrocarbons"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:FileKey
], sio:Category .
hao:Code rdf:type owl:Class ;
rdfs:label "code"^^xsd:string ;
skos:definition "A code is a string sequence used to represent a constructed response variable in data tables."^^xsd:string ;
skos:example "hyp"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:InformationContentEntity .
hao:Cartridge rdf:type owl:Class ;
rdfs:label "cartridge"^^xsd:string ;
skos:definition "A cartridge is the minimal necessary analysis components from the HAO are stored in modular serializations called cartridges. Given a KG, a cartridge is a subgraph containing application-specific (in this case, analysis-specific) vocabularies that link to the KG’s existing elements and extend the range of problems it may be applied to. In STA, cartridges are loaded and modifiedas the user chooses how to construct their risk analysis study."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:InformationContentEntity .
hao:Alex a sio:Person ;
rdfs:label "Alexander New" .
hao:InputCartridge rdf:type owl:Class ;
rdfs:label "input cartridge"^^xsd:string ;
skos:definition "An input cartridge is a type of cartridge used to define input parameters / configurations when constructing a study."^^xsd:string ;
skos:example "Response variable cartridge defining hypertension"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf hao:Cartridge .
hao:OutputCartridge rdf:type owl:Class ;
rdfs:label "output cartridge"^^xsd:string ;
skos:definition "An output cartridge is a type of cartridge that stores an analysis’ statistical findings and links to input cartridges used to define them."^^xsd:string ;
skos:example "Results cartridge describing environmental risk factors for hypertension in obese women"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasSource ;
owl:someValuesFrom hao:InputCartridge
], hao:Cartridge.
hao:RiskFactorCartridge rdf:type owl:Class ;
rdfs:label "risk factor cartridge"^^xsd:string ;
skos:definition "A risk factor cartridge describes categories of semantically similar risk factors and details how they should be modeled."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom ncit:C17103
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom ncit:C54420
], hao:InputCartridge .
hao:CohortCartridge rdf:type owl:Class ;
rdfs:label "cohort cartridge"^^xsd:string ;
skos:definition "A cohort cartridge lists the inclusion criteria used to determine if a given subject may be included in the user’s study."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:UseCohort
],
[
a owl:Restriction ;
owl:onProperty sio:isAbout ;
owl:someValuesFrom stato:0000203
], hao:InputCartridge .
stato:0000203 rdf:type owl:Class;
rdfs:subClassOf stato:0000193;
rdfs:label "cohort";
skos:definition "a cohort is a study group population where the members are human beings which meet inclusion criteria and undergo a longitudinal design" .
stato:0000193 rdf:type owl:Class;
rdfs:label "study group population";
rdfs:subClassOf sio:Collection;
skos:definition "is a population whose individual members realize (may be expressed as) a combination of inclusion rule values specifications or resulting from a sampling process (e.g. recruitment followed by randomization to group) on which a number of measurements will be carried out, which may be used as input to statistical tests and statistical inference." .
ncit:C73619 a owl:Class ;
rdfs:label "Feature" ;
rdfs:subClassOf obo:NCIT_C25447 ;
obo:IAO_0000115 "A prominent or identifiable aspect, region, or site of interest." ;
obo:IAO_0000412 obo:ncit.owl ;
obo:NCIT_NHC0 "C73619" ;
obo:NCIT_P106 "Qualitative Concept" ;
obo:NCIT_P108 "Feature" ;
obo:NCIT_P207 "C2348519" ;
obo:NCIT_P366 "Feature" ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom sio:Variable
],
[
a owl:Restriction ;
owl:onProperty sio:hasProperty ;
owl:someValuesFrom hao:FeatureUsage
];
oboInOwl:hasExactSynonym "Feature" .
ncit:C25447 a owl:Class ;
rdfs:label "Characteristic" ;
obo:IAO_0000115 "The distinguishing qualities or prominent aspect of a person, object, action, process, or substance." ;
obo:IAO_0000412 obo:ncit.owl ;
obo:NCIT_A11 obo:NCIT_C20189 ;
obo:NCIT_NHC0 "C25447" ;
obo:NCIT_P106 "Conceptual Entity" ;
obo:NCIT_P108 "Characteristic" ;
obo:NCIT_P207 "C1521970" ;
obo:NCIT_P322 "NICHD" ;
obo:NCIT_P366 "Characteristics" ;
obo:NCIT_P371 "Characteristic" ;
oboInOwl:hasExactSynonym "Characteristic" , "Features" , "Feature" , "Characteristics" ;
oboInOwl:inSubset <http://purl.oboInOwllibrary.org/oboInOwl/NCIT_C90259> , <http://purl.oboInOwllibrary.org/oboInOwl/NCIT_C89506> .
hao:ParametersCartridge rdf:type owl:Class ;
rdfs:label "parameters cartridge"^^xsd:string ;
skos:definition "A parameters cartridge contains rules to complete the chosen analysis workflow. "^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:isAbout ;
owl:someValuesFrom sio:Parameter
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:Metric
],
[
a owl:Restriction ;
owl:onProperty sio:hasMeasurementValue ;
owl:someValuesFrom hao:MinPositive
],
[
a owl:Restriction ;
owl:onProperty sio:hasPart ;
owl:someValuesFrom hao:Hyperparameter
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:CadreCount
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom sio:MaximalValue
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:FeatureUsage
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom sio:MinimalValue
],
[
a owl:Restriction ;
owl:onProperty sio:hasProperty ;
owl:someValuesFrom sio:Model
], hao:InputCartridge .
hao:ResponseCartridge rdf:type owl:Class ;
rdfs:label "response cartridge"^^xsd:string ;
skos:definition "A response variable cartridge provides the analysis concepts and background domain axioms necessary to model a given disease"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:AnalysisQuestion
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:TargetVariable
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom obcs:0000039
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom sio:Variable
],
[
a owl:Restriction ;
owl:onProperty sio:hasProperty ;
owl:someValuesFrom sio:Model
],
[
a owl:Restriction ;
owl:onProperty prov:wasDerivedFrom ;
owl:someValuesFrom xsd:string
], hao:InputCartridge .
hao:ResultsCartridge rdf:type owl:Class ;
rdfs:label "results cartridge"^^xsd:string ;
dct:description "Quantification of subpopulation-specific discovered associations between the risk factor and the response variable using regression coefficients, standard errors, and p-values"^^xsd:string ;
skos:definition "A results cartridge is a type of output cartridge describing a single study’s statistical findings and constituent input cartridges."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasPart ;
owl:someValuesFrom hao:CadreList
], [
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom sio:StatisticalAssociation
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:Result
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:StatisticalEstimate
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom obi:0000175
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom stato:0000562
], hao:OutputCartridge .
hao:CadreList rdf:type owl:Class ;
rdfs:label "cadre list" ;
skos:definition "A cadre list contains the information of a list of cadres."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:List ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasPart ;
owl:someValuesFrom hao:Cadre
] .
hao:Cadre rdf:type owl:Class ;
rdfs:label "cadre" ;
skos:definition "A cadre is a probabilistic subpopulation produced by SCM. Cadres are similar to clusters, but they are identified via supervised learning and may incorporate feature selection or weighting in their definitions."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:CadreSize
],
[
a owl:Restriction ;
owl:onProperty sio:isAssociatedWith ;
owl:someValuesFrom sio:Parameter
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:CenterParameter
],
[
a owl:Restriction ;
owl:onProperty sio:hasIdentifier ;
owl:someValuesFrom hao:CadreIndex
], stato:0000203 .
# significance threshold
hao:Threshold rdf:type owl:Class ;
rdfs:label "threshold"^^xsd:string ;
skos:definition "A threshold is the minimal value to show some significance exist."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:InformationalQuality .
sio:InformationalQuality rdf:type owl:Class ;
rdfs:label "informational quality"^^xsd:string ;
dct:description "An informational quality is a quality that pertains to information."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Quality .
sio:Quality rdf:type owl:Class ;
rdfs:label "quality"^^xsd:string ;
dct:description "A quality is an attribute that is intrinsically associated with its bearer (or its parts), but whose presence/absence and observed/measured value may vary."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Attribute .
hao:StudyVariable rdf:type owl:Class ;
rdfs:label "study variable"^^xsd:string ;
skos:definition "A study variable is a variable that potentially has a significant association with the response variable"^^xsd:string ;
skos:example "Urinary cadmium"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf stato:0000258 .
hao:TargetVariable rdf:type owl:Class ;
rdfs:label "target variable"^^xsd:string ;
skos:definition "A target variable is a variable used as response variable / target feature in modeling analyses"^^xsd:string ;
skos:example "Hypertension"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf stato:0000258 .
ncit:C42645 rdf:type owl:Class ;
rdfs:label "data type"^^xsd:string ;
skos:definition "A data type is the type of response variable data."^^xsd:string ;
skos:example "Binary variable"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:Attribute .
ncit:C54420 rdf:type owl:Class ;
rdfs:label "exception"^^xsd:string ;
skos:definition "An exception is the variable name in risk factor tables that have names that look like risk factors but aren’t."^^xsd:string ;
skos:example "URXUCR"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:Attribute .
hao:Condition rdf:type owl:Class ;
rdfs:label "condition"^^xsd:string ;
skos:definition "A condition is a mathematical definition of component of response variable definition, containing relationship, right-hand side, and left-hand side."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf ncit:C25652 .
ncit:C25652 a owl:Class ;
rdfs:label "Requirement" ;
obo:IAO_0000115 "Something that is a necessary condition; something that is obligatory." ;
obo:IAO_0000412 obo:ncit.owl ;
obo:NCIT_NHC0 "C25652" ;
obo:NCIT_P106 "Functional Concept" ;
obo:NCIT_P108 "Requirement" ;
obo:NCIT_P207 "C1514873" ;
obo:NCIT_P366 "Required" ;
rdfs:subClassOf sio:Entity;
oboInOwl:hasExactSynonym "Requirement" , "Required" , "Mandatory" , "Requisite" .
hao:Conjunction rdf:type owl:Class ;
rdfs:label "conjunction"^^xsd:string ;
skos:definition "A conjunction is a mathematical operator used to combine expressions in response variable definitions."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
skos:example "prod"^^xsd:string ;
rdfs:subClassOf sio:Conjunctionand .
hao:RHS rdf:type owl:Class ;
rdfs:label "right hand side"^^xsd:string ;
skos:definition "Right-hand side of expression in response variable definitions."^^xsd:string ;
skos:example "90"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf ncit:C80488 .
hao:LHS rdf:type owl:Class ;
rdfs:label "left hand side"^^xsd:string ;
skos:definition "Left-hand side of expression in response variable definitions"^^xsd:string ;
skos:example "sbp"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf ncit:C80488 .
ncit:C80488 a owl:Class ;
rdfs:label "Expression" ;
obo:IAO_0000115 "A combination of symbols that represents a value." ;
obo:IAO_0000412 obo:ncit.owl ;
obo:NCIT_NHC0 "C80488" ;
obo:NCIT_P106 "Classification" ;
obo:NCIT_P108 "Expression" ;
obo:NCIT_P207 "C2911684" ;
obo:NCIT_P366 "Expression_String" ;
rdfs:subClassOf sio:InformationContentEntity;
oboInOwl:hasExactSynonym "Expression" .
hao:Relationship rdf:type owl:Class ;
rdfs:label "relationship"^^xsd:string ;
skos:definition "Mathematical operator used in response variable definitions."^^xsd:string ;
skos:example "Greater-than-or-equal"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:LogicalOperator .
hao:AnalysisQuestion rdf:type owl:Class ;
rdfs:label "analysis question"^^xsd:string ;
skos:definition "An analysis question is a natural language description of what question a given analysis answers."^^xsd:string ;
skos:example "Are higher exposure amounts of a risk factor significantly associated with the presence of heart disease?"^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:Question .
sio:Definition rdf:type owl:Class ;
rdfs:label "definition"^^xsd:string ;
dct:description "A definition is a description that succintly characterizes an entity."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:Description .
sio:Description rdf:type owl:Class ;
rdfs:label "description"^^xsd:string ;
dct:description "A description is language entity in which elements of a language (formal or natural) are used to characterize an entity."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf sio:LanguageEntity .
hao:FileKey rdf:type owl:Class ;
rdfs:label "file key"^^xsd:string ;
skos:definition "A file key is a character sequence mapping risk factor categories to data table filenames."^^xsd:string ;
skos:example "Data table filenames containing 'ins' contain risk factor measurements of the category Organophosphate Insecticides "^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:InformationContentEntity .
hao:Note rdf:type owl:Class;
rdfs:label "note"^^xsd:string ;
skos:definition "A note to describe the data in the file."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:Description .
hao:ModelCartridge rdf:type owl:Class ;
rdfs:label "model cartridge"^^xsd:string ;
dct:description "The hyperparameters used to train a model, the parameter estimates learned during training, and the rules by which it is applied to new observations."^^xsd:string ;
skos:definition "A model cartridge assocatiated with a .pkl file gives the parameters and hyperparameters of the associated SCM. The SCM class contains methods to assign observations to new cadres. "^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:isAbout ;
owl:someValuesFrom sio:Model
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom ncit:C17103
], hao:OutputCartridge .
hao:SubpopulationCartridge rdf:type owl:Class ;
rdfs:label "subpopulation cartridge"^^xsd:string ;
dct:description "Summary statistics characterizing discovered subpopulations, including within-subpopulation variable means and rates."^^xsd:string ;
skos:definition "A subpopulation cartridges gives 'Table 1s' (cohort-description tables) of discovered subpopulations."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:CadreCount
],
[
a owl:Restriction ;
owl:onProperty sio:hasComponentPart ;
owl:someValuesFrom hao:CadreSizeList
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:BaseRate
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:SubpopulationCharacteristic
], hao:OutputCartridge .
hao:ModelParameter rdf:type owl:Class ;
rdfs:label "model parameter"^^xsd:string ;
skos:definition "A model parameter is a data item which is part of a model and which is meant to characterize an theoretical or unknown population. A model parameter may be estimated by considering the properties of samples presumably taken from the theoritecal population."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:Parameter .
hao:Metric rdf:type owl:Class ;
rdfs:label "metric"^^xsd:string ;
skos:definition "A metric describes how to choose the best model. For population health, this is the Bayesian Information Criterion (BIC); for other problems, it could be (e.g.) generalization error."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:MeasurementValue .
hao:TargetPrediction rdf:type owl:Class ;
rdfs:label "target prediction"^^xsd:string ;
skos:definition "A target prediction function maps a subject record to a subpopulation-specific score. If the analysis problem is classification, the score gives that subject's risk of having a condition. If the analysis problem is regression, the score is a scaled estimate of the subject's response variable value."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf ncit:C54156 .
ncit:C54156 a owl:Class ;
rdfs:label "Prediction" ;
obo:IAO_0000115 "An extrapolation of given data into the future." ;
obo:IAO_0000412 obo:ncit.owl ;
obo:NCIT_NHC0 "C54156" ;
obo:NCIT_P106 "Idea or Concept" ;
obo:NCIT_P108 "Prediction" ;
obo:NCIT_P207 "C0681842" ;
obo:NCIT_P366 "Prediction" ;
rdfs:subClassOf sio:DataItem;
oboInOwl:hasExactSynonym "Predicted" , "Prediction" .
hao:CadreAssignment rdf:type owl:Class ;
rdfs:label "cadre assignment function"^^xsd:string ;
skos:definition "A cadre assignment function maps a subject record to a probability distribution characterizing that subject's probability of belonging to one of M cadres."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:Function .
hao:CadreModel rdf:type owl:Class ;
rdfs:label "cadre model"^^xsd:string ;
dct:description "A specialized kind of supervized cadre model technique that discovers sub-populations or cadres"^^xsd:string ;
rdfs:subClassOf sio:Model .
hao:Sharpness rdf:type owl:Class ;
rdfs:label "sharpness"^^xsd:string ;
skos:definition "The sharpness hyperparameter affects how quickly, as a subject's attributes shift, their cadre assignment function shifts."^^xsd:string ;
rdfs:subClassOf hao:Hyperparameter .
hao:RegularizationStrength rdf:type owl:Class ;
rdfs:label "regularization strength"^^xsd:string ;
skos:definition "Regularization strength, a nonnegative number, controls the tradeoff between a model that is simple and one that fits the training data well."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf hao:Hyperparameter .
hao:RegularizationStrengthD rdf:type owl:Class ;
rdfs:label "regularization strength d"^^xsd:string ;
skos:definition "Regularization strength for the d parameter."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf hao:RegularizationStrength .
hao:RegularizationStrengthW rdf:type owl:Class ;
rdfs:label "regularization strength W"^^xsd:string ;
skos:definition "Regularization strength for the W parameter."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf hao:RegularizationStrength .
hao:ElasticNetMixingWeight rdf:type owl:Class ;
rdfs:label "elastic net mixing weight"^^xsd:string ;
skos:definition "The elastic net mixing weight, a number between 0 and 1, controls whether a given parameter's regularization looks more like l1 regularization or l2 regularization."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf hao:Hyperparameter .
hao:ElasticNetMixingWeightW rdf:type owl:Class ;
rdfs:label "elastic net mixing weight W"^^xsd:string ;
skos:definition "Alpha W, the elastic net mixing weights for the W parameter."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf hao:ElasticNetMixingWeight .
hao:ElasticNetMixingWeightD rdf:type owl:Class ;
rdfs:label "elastic net mixing weight D"^^xsd:string ;
skos:definition "Alpha d, the elastic net mixing weights for the d parameter."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf hao:ElasticNetMixingWeight .
sio:DataAnalysis rdf:type owl:Class ;
rdfs:label "data analysis" ;
dct:description "Data analysis is a process of inspecting, cleaning, transforming, and modeling data with the goal of highlighting useful information, suggesting conclusions, and supporting decision making."^^xsd:string ;
rdfs:isDefinedBy <http://semanticscience.org/ontology/sio.owl>;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasImplementation ;
owl:someValuesFrom hao:AnalysisWorkflow
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:AnalysisQuestion
] .
hao:AnalysisWorkflow rdf:type owl:Class ;
rdfs:label "analysis workflow" ;
rdfs:subClassOf sio:Workflow ;
skos:definition "An analysis workflow is a set of steps used to begin and complete an analysis. It includes defining the problem, preparing the data, training a statistical model, and representing the results."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasComponentPart ;
owl:someValuesFrom hao:InputCartridge
],
[
a owl:Restriction ;
owl:onProperty sio:isImplementationOf ;
owl:someValuesFrom sio:Model
],
[
a owl:Restriction ;
owl:onProperty sio:hasComponentPart ;
owl:someValuesFrom hao:OutputCartridge
] .
hao:FeatureUsage rdf:type owl:Class ;
rdfs:label "feature usage"^^xsd:string ;
skos:definition "How to divide supplied features into cadre-assignment and target-prediction categories."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf [
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:TargetPrediction
],
[
a owl:Restriction ;
owl:onProperty sio:hasAttribute ;
owl:someValuesFrom hao:CadreAssignment
], prov:Usage .
hao:Hyperparameter rdf:type owl:Class ;
rdfs:label "hyperparameter"^^xsd:string ;
skos:definition "During model selection, a model is trained with every hyperparameter configuration, and a best model is chosen with respect to a supplied metric."^^xsd:string ;
prov:wasAttributedTo hao:Alex ;
rdfs:subClassOf sio:Parameter .