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PlasmidFinder.md

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Executing PlasmidFinder

Use the below code to execute PlasmidFinder Abel. Dont need to mention the BLAST location. Contact Jeevan if you have any issues.

conda activate PlasmidFinder

DB="/work/projects/nn9305k/src/PlasmidFinder/PlasmidFinder_DB/plasmidfinder_db/"

python /work/projects/nn9305k/src/PlasmidFinder/plasmidfinder/plasmidfinder.py -p $DB 

conda deactivate PlasmidFinder