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<!DOCTYPE html>
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<title>Timothy L Tickle</title>
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<p id="name">Timothy L Tickle</p>
<p id="title">Sr Software Engineer<br>Aviv Regev Lab<br>Broad Institute</p>
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<p id="email">[email protected]</p>
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<li><a href="index.html">About Me</a></li>|
<li><a href="education.html">Education</a></li>|
<li><a href="experience.html">Experience</a></li>|
<li><a href="projects.html">Projects</a></li>|
<li><a href="publications.html">Publications</a></li>|
<li><a href="talks_awards.html">Talks - Awards</a></li>
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<p class="section_header">Peer-reviewed Publications<span class="style"><br /></span></p>
<p class="publication_text">W. Garrett, M. Rooks, P. Veiga, L. Wardwell-Scott, N. Segata, <span class="publication_name">T. Tickle</span>, C. A. Gallini, M. Michaud, C. Beal, J. van Hylckama Vlieg, S. Ballal, X. Morgan, J. Glickman, D. Gevers, and C. Huttenhower, "Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission", ISME Journal, 2014.<br>(Highlighted in Nature Review Gastroenterology)</p>
<p class="publication_link"><a title="http://www.jci.org/articles/view/75436" href="http://www.jci.org/articles/view/75436">http://www.jci.org/articles/view/75436</a><br><br></p>
<p class="publication_text">Y. Haberman, <span class="publication_name">T. Tickle</span>, P. Dexheimer, M. Kim, D. Tang, R. Karns, R. Baldassano, J. Noe, J. Rosh, J. Markowitz, M. Heyman, A. Griffiths, W. Crandall, D. Mack, S. Baker, C. Huttenhower, D. Keljo, J. Hyams, S. Kugathasan, T. Walters, B. Aronow, R. Xavier, D. Gevers, and L. Denson, "Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature", The Journal of Clinical Investigation, 2014.</p>
<p class="publication_link"><a title="http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej20143a.html" href="http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej20143a.html">http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej20143a.html</a><br><br></p>
<p class="publication_text"><span class="publication_name">T. L. Tickle</span>, N. Segata, L. Waldron, U. Weingart, and C. Huttenhower, "Two-stage microbial community experimental design," ISME Journal, 2013.</p>
<p class="publication_link"><a title="http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej2013139a.html" href="http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej2013139a.html">http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej2013139a.html</a><br><br></p>
<p class="publication_text">N. Segata, D. Boernigen, <span class="publication_name">T. L. Tickle</span>, X. C. Morgan, W. S. Garrett, and C. Huttenhower, "Computational metaomics for microbial community studies," Molecular Systems Biology, vol. 9, 2013.<br>( Selected for F1000Prime )</p>
<p class="publication_link"><a title="http://msb.embopress.org/content/9/1/666" href="http://msb.embopress.org/content/9/1/666">http://msb.embopress.org/content/9/1/666</a><br><br></p>
<p class="publication_text"><span class="publication_name">T. L. Tickle</span>, H. Sokol, X. Morgan, D. Gevers, K. Devaney, D. Ward, J. Reyes, S. Shah, N. LeLeiko, S. Snapper, A. Bousvaros, J. Korzenik, B. Sands, R. Xavier, and C. Huttenhower, "Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment," Genome Biology, vol. 13, no. R79, 2012.</p>
<p class="publication_link"><a title="http://genomebiology.com/content/13/9/R79" href="http://genomebiology.com/content/13/9/R79">http://genomebiology.com/content/13/9/R79</a><br><br></p>
<p class="publication_text"><span class="publication_name">T. L. Tickle</span>, Data Mining the Serous Ovarian Tumor Transcriptome. PhD thesis, University of North Carolina at Charlotte, 2011.<br><br></p>
<p class="publication_text">Z. Mostafavi, <span class="publication_name">T. L. Tickle</span>, J. Zhang, K. Bennett, J. Vachris, M. Spencer, M. T. Mostafavi, and D. Tait, "Correlation analysis of hox, erbb and igfbp family gene expression in ovarian cancer," Cancer Investigation, vol. 26, pp. 990-998, 2008.</p>
<p class="publication_link"><a title="http://www.ncbi.nlm.nih.gov/pubmed/19093257" href="http://www.ncbi.nlm.nih.gov/pubmed/19093257">http://www.ncbi.nlm.nih.gov/pubmed/19093257</a><br><br></p>
<p class="publication_text">A. Fodor, <span class="publication_name">T. L. Tickle</span>, and C. Richardson, "Towards the uniform distribution of null p values on affymetrix microarrays," Genome Biology, vol. 8, no. 5, 2007.</p>
<p class="publication_link"><a title="http://genomebiology.com/content/8/5/R69" href="http://genomebiology.com/content/8/5/R69">http://genomebiology.com/content/8/5/R69</a><br><br></p>
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<p>Copyright © Timothy L Tickle 2013. All rights reserved. Designed by Timothy L Tickle.</p>
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