diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index 38b21a4b2..e4d561939 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "b45878f3df6dffef908d7ec87e98124988d559f6" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index 7e11ea98b..7ddabed3a 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "a0a3ca6aa1eb54296a719c0190365d414d855bc0" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index 0485ee814..eeb369f38 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "e25051313213ab9b94363dd6ade21d1145ab1ba1" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,26 +225,26 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.12" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -255,15 +278,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -277,15 +304,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -332,10 +359,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,7 +371,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -357,9 +384,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -389,9 +416,9 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -401,9 +428,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -445,9 +472,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -459,21 +486,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -505,20 +533,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -533,9 +573,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -555,16 +595,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -574,9 +614,9 @@ version = "3.3.10+0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" +git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" +version = "1.16.2" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] @@ -589,12 +629,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -611,10 +652,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -651,19 +692,19 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] @@ -673,21 +714,21 @@ version = "1.9.0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -714,9 +755,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -748,10 +789,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -759,18 +800,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -790,9 +836,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -801,9 +847,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -819,15 +865,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -837,9 +883,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -854,27 +900,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -883,9 +939,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -901,12 +957,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -926,21 +976,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -994,10 +1049,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1011,11 +1066,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1025,6 +1081,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1035,9 +1092,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1055,22 +1112,22 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLDataPattern]] deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] @@ -1086,9 +1143,9 @@ version = "0.5.4" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MLLabelUtils]] deps = ["LearnBase", "MappedArrays", "StatsBase"] @@ -1098,9 +1155,9 @@ version = "0.5.7" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1112,15 +1169,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1150,7 +1207,7 @@ version = "0.7.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1160,9 +1217,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1195,24 +1252,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1223,12 +1283,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1238,9 +1298,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1250,9 +1310,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1261,26 +1321,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1296,7 +1356,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1306,15 +1366,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1344,15 +1404,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1372,15 +1432,15 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1399,14 +1459,14 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1448,20 +1508,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1495,10 +1561,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1523,28 +1589,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1553,15 +1626,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1602,19 +1675,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1633,13 +1707,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1656,7 +1731,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1672,9 +1747,9 @@ version = "0.33.21" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1689,9 +1764,9 @@ version = "0.7.3" [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1700,25 +1775,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1727,9 +1808,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "b69f8338df046774bd975b13be9d297eca5efacb" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.1.0+2023d" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1745,9 +1826,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1782,25 +1863,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1816,22 +1900,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1861,9 +1934,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1906,9 +1979,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -1924,9 +1997,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1935,9 +2008,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1947,9 +2020,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2098,7 +2171,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2108,9 +2181,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2119,10 +2192,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2145,7 +2218,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2166,10 +2239,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2186,12 +2259,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index 57e2e897d..66936824f 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "7168816b9d483eadc3c00203d16ab269e5dc5bfd" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -98,9 +121,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -129,9 +152,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -141,9 +164,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -169,9 +192,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -190,20 +213,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -219,15 +242,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -241,9 +268,9 @@ weakdeps = ["InverseFunctions"] [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -290,10 +317,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -302,7 +329,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -315,9 +342,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -353,15 +380,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -406,21 +433,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -452,20 +480,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -480,9 +520,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -502,16 +542,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -536,12 +576,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -552,10 +593,10 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[deps.Flux]] -deps = ["Adapt", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] -git-tree-sha1 = "b97c3fc4f3628b8835d83789b09382961a254da4" +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "fd7b23aa8013a7528563d429f6eaf406f60364ed" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.14.6" +version = "0.14.12" [deps.Flux.extensions] FluxAMDGPUExt = "AMDGPU" @@ -576,10 +617,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -616,43 +657,43 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8" +git-tree-sha1 = "47e4686ec18a9620850bad110b79966132f14283" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "9.0.0" +version = "10.0.2" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -679,9 +720,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -697,9 +738,9 @@ version = "0.3.23" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5" +git-tree-sha1 = "5d8c5713f38f7bc029e26627b687710ba406d0dd" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.10" +version = "0.4.12" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -713,10 +754,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -724,18 +765,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -755,9 +801,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -766,9 +812,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -784,9 +830,9 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -796,9 +842,9 @@ version = "0.2.4" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -808,9 +854,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -825,27 +871,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -854,9 +910,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -872,12 +928,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -891,21 +941,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -959,10 +1014,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -976,11 +1031,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -990,6 +1046,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1000,9 +1057,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1020,28 +1077,28 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1050,15 +1107,15 @@ version = "0.4.17" [[deps.MLUtils]] deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "3504cdb8c2bc05bde4d4b09a81b01df88fcbbba0" +git-tree-sha1 = "b45738c2e3d0d402dffa32b2c1654759a2ac35a4" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.3" +version = "0.4.4" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1070,15 +1127,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1102,13 +1159,13 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1150,10 +1207,13 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1163,19 +1223,19 @@ version = "1.3.5+1" [[deps.OneHotArrays]] deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] -git-tree-sha1 = "5e4029759e8699ec12ebdf8721e51a659443403c" +git-tree-sha1 = "963a3f28a2e65bb87a68033ea4a616002406037d" uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.4" +version = "0.2.5" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1185,9 +1245,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1197,9 +1257,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1208,26 +1268,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1243,7 +1303,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1253,15 +1313,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1285,9 +1345,9 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyPrint]] git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" @@ -1295,10 +1355,10 @@ uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" version = "0.2.0" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1318,29 +1378,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1382,20 +1442,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1435,10 +1501,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1463,28 +1529,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1493,9 +1566,9 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1542,19 +1615,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1573,13 +1647,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1596,7 +1671,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1612,9 +1687,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1628,25 +1703,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1661,9 +1742,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1688,25 +1769,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1722,22 +1806,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1767,9 +1840,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1812,21 +1885,21 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1836,9 +1909,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1987,7 +2060,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1997,9 +2070,9 @@ version = "1.5.5+0" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "16848c23e7961e099a4152ba0d10db887f412ee9" +git-tree-sha1 = "4ddb4470e47b0094c93055a3bcae799165cc68f1" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.65" +version = "0.6.69" [deps.Zygote.extensions] ZygoteColorsExt = "Colors" @@ -2013,9 +2086,9 @@ version = "0.6.65" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2024,10 +2097,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2050,7 +2123,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2071,10 +2144,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2091,12 +2164,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index be8f1d5cc..0e1edd828 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "22534c8a743be6cd79b588fb185e78dd8614a6d2" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index c72f859f0..49f941d5d 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "9182614b755dc32fb5fc91ef98f1dbba04d8ffaf" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,26 +225,26 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.12" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -255,15 +278,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -277,15 +304,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -332,10 +359,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,7 +371,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -357,9 +384,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -395,9 +422,9 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -407,9 +434,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -451,9 +478,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -465,21 +492,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -511,20 +539,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -539,9 +579,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -561,16 +601,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -592,9 +632,9 @@ version = "0.1.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" +git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" +version = "1.16.2" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] @@ -607,12 +647,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -629,10 +670,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -669,19 +710,19 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] @@ -691,21 +732,21 @@ version = "1.9.0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -732,9 +773,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -766,10 +807,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -777,18 +818,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -808,9 +854,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -819,9 +865,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -837,9 +883,9 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -849,9 +895,9 @@ version = "0.2.4" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -861,9 +907,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -878,27 +924,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -907,9 +963,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -925,12 +981,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -944,21 +994,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1012,10 +1067,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1029,11 +1084,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1043,6 +1099,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1053,9 +1110,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1073,28 +1130,28 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1103,15 +1160,15 @@ version = "0.4.17" [[deps.MLUtils]] deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "3504cdb8c2bc05bde4d4b09a81b01df88fcbbba0" +git-tree-sha1 = "b45738c2e3d0d402dffa32b2c1654759a2ac35a4" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.3" +version = "0.4.4" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1123,15 +1180,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1161,7 +1218,7 @@ version = "0.7.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1171,9 +1228,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1212,24 +1269,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1240,12 +1300,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1255,9 +1315,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1267,9 +1327,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1278,26 +1338,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1313,7 +1373,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1323,15 +1383,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1361,9 +1421,9 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyPrint]] git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" @@ -1371,10 +1431,10 @@ uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" version = "0.2.0" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1394,15 +1454,15 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1421,14 +1481,14 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1470,20 +1530,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1517,10 +1583,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1545,28 +1611,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1575,15 +1648,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1635,19 +1708,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1666,13 +1740,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1689,7 +1764,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1705,9 +1780,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1722,9 +1797,9 @@ version = "0.7.3" [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1733,25 +1808,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1760,9 +1841,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "b69f8338df046774bd975b13be9d297eca5efacb" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.1.0+2023d" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1778,9 +1859,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1815,25 +1896,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1849,22 +1933,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1894,9 +1967,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1939,9 +2012,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -1957,9 +2030,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1968,9 +2041,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1980,9 +2053,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2131,7 +2204,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2141,9 +2214,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2152,10 +2225,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2178,7 +2251,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2199,10 +2272,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2219,12 +2292,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index a3650ad1f..88dc05526 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "22d77437d5f9cc37590eb650c66a832d7f8185cb" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -98,9 +121,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -129,9 +152,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -141,9 +164,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -169,9 +192,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -190,20 +213,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -219,15 +242,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -241,9 +268,9 @@ weakdeps = ["InverseFunctions"] [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -290,10 +317,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -302,7 +329,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -315,9 +342,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -347,15 +374,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -400,21 +427,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -446,20 +474,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -474,9 +514,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -496,16 +536,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -518,12 +558,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -540,10 +581,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -580,37 +621,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -637,9 +678,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -665,10 +706,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -676,18 +717,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -707,9 +753,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -718,9 +764,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -736,15 +782,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -754,9 +800,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -771,27 +817,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,9 +856,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -818,12 +874,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -837,21 +887,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -905,10 +960,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -922,11 +977,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -936,6 +992,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -946,9 +1003,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -966,34 +1023,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1005,15 +1062,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1037,13 +1094,13 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1079,10 +1136,13 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1093,12 +1153,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1108,9 +1168,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1120,9 +1180,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1131,26 +1191,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1166,7 +1226,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1176,15 +1236,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1208,15 +1268,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1236,29 +1296,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1300,20 +1360,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1347,10 +1413,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1375,28 +1441,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1405,9 +1478,9 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1443,19 +1516,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1474,13 +1548,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1497,7 +1572,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1513,9 +1588,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1529,25 +1604,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1562,9 +1643,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1589,25 +1670,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1623,22 +1707,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1668,9 +1741,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1713,21 +1786,21 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1737,9 +1810,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1888,7 +1961,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1898,9 +1971,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1909,10 +1982,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1935,7 +2008,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1956,10 +2029,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -1976,12 +2049,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index 4c986bc0a..9e926d233 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "0517af877736a403423fea5e79af9a2622617f81" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,26 +225,26 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.12" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -255,15 +278,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -277,15 +304,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -332,10 +359,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,7 +371,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -357,9 +384,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -389,9 +416,9 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -401,9 +428,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -445,9 +472,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -459,21 +486,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -505,20 +533,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -533,9 +573,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -555,16 +595,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -574,9 +614,9 @@ version = "3.3.10+0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" +git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" +version = "1.16.2" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] @@ -589,12 +629,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -611,10 +652,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -651,19 +692,19 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] @@ -673,21 +714,21 @@ version = "1.9.0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -714,9 +755,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -748,10 +789,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -759,18 +800,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -790,9 +836,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -801,9 +847,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -819,15 +865,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -837,9 +883,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -854,27 +900,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -883,9 +939,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -901,12 +957,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -926,21 +976,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -994,10 +1049,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1011,11 +1066,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1025,6 +1081,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1035,9 +1092,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1055,22 +1112,22 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLDataPattern]] deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] @@ -1086,9 +1143,9 @@ version = "0.5.4" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MLLabelUtils]] deps = ["LearnBase", "MappedArrays", "StatsBase"] @@ -1098,9 +1155,9 @@ version = "0.5.7" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1112,15 +1169,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1150,7 +1207,7 @@ version = "0.7.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1160,9 +1217,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1195,24 +1252,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1223,12 +1283,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1238,9 +1298,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1250,9 +1310,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1261,26 +1321,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1296,7 +1356,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1306,15 +1366,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1344,15 +1404,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1372,15 +1432,15 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1399,14 +1459,14 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1448,20 +1508,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1495,10 +1561,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1523,28 +1589,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1553,15 +1626,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1602,19 +1675,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1633,13 +1707,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1656,7 +1731,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1672,9 +1747,9 @@ version = "0.33.21" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1689,9 +1764,9 @@ version = "0.7.3" [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1700,25 +1775,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1727,9 +1808,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "b69f8338df046774bd975b13be9d297eca5efacb" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.1.0+2023d" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1745,9 +1826,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1782,25 +1863,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1816,22 +1900,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1861,9 +1934,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1906,9 +1979,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -1924,9 +1997,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1935,9 +2008,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1947,9 +2020,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2098,7 +2171,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2108,9 +2181,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2119,10 +2192,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2145,7 +2218,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2166,10 +2239,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2186,12 +2259,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index c55a16b30..930d6a9b9 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "53f714f9c520703858bde7881fd306675a4a29d7" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,26 +225,26 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.12" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -255,15 +278,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -277,15 +304,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -332,10 +359,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,7 +371,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -357,9 +384,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -389,9 +416,9 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -401,9 +428,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -445,9 +472,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -459,21 +486,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -505,20 +533,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -533,9 +573,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -555,16 +595,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -574,9 +614,9 @@ version = "3.3.10+0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" +git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" +version = "1.16.2" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] @@ -589,12 +629,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -611,10 +652,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -651,37 +692,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -708,9 +749,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -742,10 +783,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -753,18 +794,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -784,9 +830,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -795,9 +841,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -813,15 +859,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -831,9 +877,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -848,27 +894,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -877,9 +933,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -895,12 +951,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -920,21 +970,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -988,10 +1043,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1005,11 +1060,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1019,6 +1075,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1029,9 +1086,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1049,22 +1106,22 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLDataPattern]] deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] @@ -1080,9 +1137,9 @@ version = "0.5.4" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MLLabelUtils]] deps = ["LearnBase", "MappedArrays", "StatsBase"] @@ -1092,9 +1149,9 @@ version = "0.5.7" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1106,15 +1163,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1144,7 +1201,7 @@ version = "0.7.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1154,9 +1211,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1189,24 +1246,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1217,12 +1277,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1232,9 +1292,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1244,9 +1304,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1255,26 +1315,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1290,7 +1350,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1300,15 +1360,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1338,15 +1398,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1366,15 +1426,15 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1393,14 +1453,14 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1442,20 +1502,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1489,10 +1555,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1517,28 +1583,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1547,15 +1620,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1591,19 +1664,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1622,13 +1696,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1645,7 +1720,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1661,9 +1736,9 @@ version = "0.33.21" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1672,9 +1747,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1683,25 +1758,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1710,9 +1791,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "b69f8338df046774bd975b13be9d297eca5efacb" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.1.0+2023d" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1728,9 +1809,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1765,25 +1846,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1799,22 +1883,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1844,9 +1917,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1889,9 +1962,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -1907,9 +1980,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1918,9 +1991,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1930,9 +2003,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2081,7 +2154,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2091,9 +2164,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2102,10 +2175,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2128,7 +2201,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2149,10 +2222,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2169,12 +2242,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index a8831e57e..b9c525778 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "a797d593ed4ed55905ba6ad67df963533cfbc8d6" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,26 +225,26 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.12" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -255,15 +278,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -277,15 +304,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -332,10 +359,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,13 +371,13 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.ComponentArrays]] deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "3ee12062466a73b5f9c04113375e4934f174bc2c" +git-tree-sha1 = "e3ced166fcefe2352b73f9ae3e1cf6f2c5d4e806" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.3" +version = "0.15.10" [deps.ComponentArrays.extensions] ComponentArraysAdaptExt = "Adapt" @@ -383,9 +410,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -421,9 +448,9 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -433,9 +460,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -477,9 +504,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -491,21 +518,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -537,20 +565,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -565,9 +605,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -587,16 +627,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -618,9 +658,9 @@ version = "0.1.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" +git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" +version = "1.16.2" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] @@ -633,12 +673,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -649,10 +690,10 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.4" [[deps.Flux]] -deps = ["Adapt", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] -git-tree-sha1 = "b97c3fc4f3628b8835d83789b09382961a254da4" +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "fd7b23aa8013a7528563d429f6eaf406f60364ed" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.14.6" +version = "0.14.12" [deps.Flux.extensions] FluxAMDGPUExt = "AMDGPU" @@ -673,10 +714,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -713,19 +754,19 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] @@ -735,27 +776,27 @@ version = "1.9.0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8" +git-tree-sha1 = "47e4686ec18a9620850bad110b79966132f14283" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "9.0.0" +version = "10.0.2" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -782,9 +823,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -800,9 +841,9 @@ version = "0.3.23" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5" +git-tree-sha1 = "5d8c5713f38f7bc029e26627b687710ba406d0dd" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.10" +version = "0.4.12" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -827,10 +868,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -838,18 +879,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -869,9 +915,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -880,9 +926,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -898,9 +944,9 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -910,9 +956,9 @@ version = "0.2.4" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -922,9 +968,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -939,27 +985,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -968,9 +1024,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -986,12 +1042,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1005,21 +1055,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1073,10 +1128,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1090,11 +1145,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1104,6 +1160,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1114,9 +1171,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1134,28 +1191,28 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1164,15 +1221,15 @@ version = "0.4.17" [[deps.MLUtils]] deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "3504cdb8c2bc05bde4d4b09a81b01df88fcbbba0" +git-tree-sha1 = "b45738c2e3d0d402dffa32b2c1654759a2ac35a4" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.3" +version = "0.4.4" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1184,15 +1241,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1222,7 +1279,7 @@ version = "0.7.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1232,9 +1289,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1273,24 +1330,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1300,19 +1360,19 @@ version = "1.3.5+1" [[deps.OneHotArrays]] deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] -git-tree-sha1 = "5e4029759e8699ec12ebdf8721e51a659443403c" +git-tree-sha1 = "963a3f28a2e65bb87a68033ea4a616002406037d" uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.4" +version = "0.2.5" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1322,9 +1382,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1334,9 +1394,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1345,20 +1405,20 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -1368,9 +1428,9 @@ weakdeps = ["Requires", "TOML"] [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1386,7 +1446,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1396,15 +1456,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1434,9 +1494,9 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyPrint]] git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" @@ -1444,10 +1504,10 @@ uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" version = "0.2.0" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1467,15 +1527,15 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1494,14 +1554,14 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1543,20 +1603,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1590,10 +1656,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1618,28 +1684,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1648,15 +1721,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1708,19 +1781,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1740,15 +1814,15 @@ version = "0.1.15" [[deps.Static]] deps = ["IfElse"] -git-tree-sha1 = "f295e0a1da4ca425659c57441bcb59abb035a4bc" +git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.8" +version = "0.8.10" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "03fec6800a986d191f64f5c0996b59ed526eda25" +git-tree-sha1 = "5d66818a39bb04bf328e92bc933ec5b4ee88e436" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.4.1" +version = "1.5.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -1756,13 +1830,14 @@ weakdeps = ["OffsetArrays", "StaticArrays"] StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1779,7 +1854,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1795,9 +1870,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1812,9 +1887,9 @@ version = "0.7.3" [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1823,25 +1898,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1850,9 +1931,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "b69f8338df046774bd975b13be9d297eca5efacb" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.1.0+2023d" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1868,9 +1949,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1905,25 +1986,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1939,22 +2023,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1989,9 +2062,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2034,9 +2107,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -2052,9 +2125,9 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -2063,9 +2136,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -2075,9 +2148,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2226,7 +2299,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2236,9 +2309,9 @@ version = "1.5.5+0" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "16848c23e7961e099a4152ba0d10db887f412ee9" +git-tree-sha1 = "4ddb4470e47b0094c93055a3bcae799165cc68f1" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.65" +version = "0.6.69" weakdeps = ["Colors", "Distances", "Tracker"] [deps.Zygote.extensions] @@ -2248,9 +2321,9 @@ weakdeps = ["Colors", "Distances", "Tracker"] [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2259,10 +2332,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2285,7 +2358,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2306,10 +2379,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2326,12 +2399,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index 2e7bc2723..fc5099c8d 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -515,9 +515,9 @@ version = "0.4.0" [[deps.DiffEqBase]] deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "4b525a4fb824c7c3a98d5d1b18fbaee239dfed7c" +git-tree-sha1 = "aee5798bd4f1ed1260bd1741221f9589e5ee8a90" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.147.2" +version = "6.147.3" [deps.DiffEqBase.extensions] DiffEqBaseChainRulesCoreExt = "ChainRulesCore" @@ -637,9 +637,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] -git-tree-sha1 = "0d4bfed4de78224797539954341354a36dedbac1" +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.24.8" +version = "0.24.9" weakdeps = ["ChainRulesCore", "EnzymeCore", "ForwardDiff", "MCMCChains", "ReverseDiff", "ZygoteRules"] [deps.DynamicPPL.extensions] @@ -1681,9 +1681,9 @@ version = "1.6.3" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "06e37c6c3d8cbddccc284ecf2b6d8b9b3a830f0f" +git-tree-sha1 = "287159684e32db56c82dbf545004a7884c6e5198" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.73.1" +version = "6.74.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index 54d4e80e3..8692fe7f4 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "ef462fc173a4ba83c350dd73690f805ff0c2abe7" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,9 +392,9 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -377,9 +404,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -421,9 +448,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -435,21 +462,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -481,20 +509,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -509,9 +549,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -531,16 +571,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -553,12 +593,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -575,10 +616,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -615,37 +656,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -672,9 +713,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -706,10 +747,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -717,18 +758,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -748,9 +794,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -759,9 +805,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -777,15 +823,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -795,9 +841,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -812,27 +858,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -841,9 +897,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -859,12 +915,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -878,21 +928,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -946,10 +1001,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -963,11 +1018,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -977,6 +1033,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -987,9 +1044,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1007,34 +1064,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1046,15 +1103,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1078,7 +1135,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1088,9 +1145,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1123,24 +1180,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1151,12 +1211,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1166,9 +1226,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1178,9 +1238,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1189,26 +1249,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1224,7 +1284,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1234,15 +1294,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1272,15 +1332,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1300,29 +1360,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1364,20 +1424,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1417,10 +1483,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1445,28 +1511,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1475,15 +1548,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1519,19 +1592,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1550,13 +1624,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1573,7 +1648,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1589,9 +1664,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1600,9 +1675,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1611,25 +1686,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1650,9 +1731,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1677,25 +1758,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1711,22 +1795,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1756,9 +1829,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1801,9 +1874,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1813,15 +1886,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1831,9 +1904,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1982,7 +2055,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1992,9 +2065,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2003,10 +2076,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2029,7 +2102,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2050,10 +2123,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2070,12 +2143,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/12-gplvm/Manifest.toml b/tutorials/12-gplvm/Manifest.toml index 808b6738f..622dd8f15 100644 --- a/tutorials/12-gplvm/Manifest.toml +++ b/tutorials/12-gplvm/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "390f0ff830d7e11242f044c4b0d23eedcbb7a091" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -27,27 +27,46 @@ uuid = "99985d1d-32ba-4be9-9821-2ec096f28918" version = "0.5.19" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -55,9 +74,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -71,9 +90,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -82,10 +101,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -104,9 +127,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -135,9 +158,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -147,9 +170,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -175,9 +198,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -196,26 +219,26 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.12" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -249,15 +272,19 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -271,9 +298,9 @@ weakdeps = ["InverseFunctions"] [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -320,10 +347,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -332,7 +359,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -345,9 +372,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -377,9 +404,9 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -389,9 +416,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -433,9 +460,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -447,21 +474,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -493,20 +521,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -521,9 +561,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -543,16 +583,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -562,9 +602,9 @@ version = "3.3.10+0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" +git-tree-sha1 = "c5c28c245101bd59154f649e19b038d15901b5dc" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.1" +version = "1.16.2" [[deps.FilePathsBase]] deps = ["Compat", "Dates", "Mmap", "Printf", "Test", "UUIDs"] @@ -577,12 +617,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -599,10 +640,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -639,37 +680,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -696,9 +737,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -730,10 +771,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -741,18 +782,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -772,9 +818,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -783,9 +829,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -801,15 +847,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -819,15 +865,15 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.KernelFunctions]] deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"] -git-tree-sha1 = "d1e34d1ae87ac280a0cfca85ea3d610f25ea6a5f" +git-tree-sha1 = "654dead9bd3313311b61087ab7a0cf2b7a935cb1" uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392" -version = "0.10.57" +version = "0.10.63" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -842,27 +888,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -871,9 +927,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -889,12 +945,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -908,21 +958,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -976,10 +1031,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -993,11 +1048,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1007,6 +1063,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -1017,9 +1074,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1037,34 +1094,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1076,15 +1133,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1114,13 +1171,13 @@ version = "0.7.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1156,10 +1213,13 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1170,12 +1230,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1185,9 +1245,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1197,9 +1257,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1208,26 +1268,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1243,7 +1303,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1253,15 +1313,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1291,15 +1351,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1319,15 +1379,15 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.RData]] deps = ["CategoricalArrays", "CodecZlib", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] @@ -1346,14 +1406,14 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1395,20 +1455,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1448,10 +1514,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1476,28 +1542,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1506,15 +1579,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1550,19 +1623,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1581,13 +1655,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1604,7 +1679,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1620,9 +1695,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1636,25 +1711,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1663,9 +1744,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "b69f8338df046774bd975b13be9d297eca5efacb" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.1.0+2023d" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1675,9 +1756,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1712,25 +1793,28 @@ weakdeps = ["RecipesBase"] [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1746,22 +1830,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1791,9 +1864,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1836,9 +1909,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -1848,9 +1921,9 @@ version = "1.4.2" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1859,9 +1932,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1871,9 +1944,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -2022,7 +2095,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2032,9 +2105,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2043,10 +2116,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2069,7 +2142,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2090,10 +2163,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2110,12 +2183,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index 03b27bc5a..913b04f81 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "8465c369abb7f6ef05a55c9b93c53a6097762489" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index 9868d2594..57a2e7fcd 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "31266805170f7b1d6aa8609e6114be070df1b249" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -98,9 +121,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -129,9 +152,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -141,9 +164,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -169,9 +192,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -190,9 +213,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -202,15 +225,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -239,10 +266,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -251,7 +278,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -285,15 +312,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -338,21 +365,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -384,20 +412,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -411,9 +451,9 @@ version = "0.1.10" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -426,21 +466,16 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" @@ -464,9 +499,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] @@ -474,9 +509,9 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] @@ -496,10 +531,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -507,18 +542,25 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -538,9 +580,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -555,9 +597,9 @@ version = "1.5.0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -567,37 +609,41 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" +version = "1.3.1" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] @@ -612,21 +658,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -649,11 +700,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -663,6 +715,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -673,9 +726,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -693,34 +746,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -734,7 +787,7 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] @@ -753,13 +806,13 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -795,20 +848,23 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -818,25 +874,25 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PrecompileTools]] deps = ["Preferences"] @@ -846,15 +902,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -874,23 +930,23 @@ version = "1.9.0" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -928,20 +984,26 @@ uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -969,10 +1031,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -997,28 +1059,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1048,19 +1117,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1079,13 +1149,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1102,7 +1173,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1118,9 +1189,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1134,25 +1205,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1167,9 +1244,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1188,9 +1265,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] @@ -1198,9 +1275,9 @@ weakdeps = ["PDMats"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1216,22 +1293,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1261,32 +1327,32 @@ version = "0.1.3" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" diff --git a/tutorials/15-gaussian-processes/Manifest.toml b/tutorials/15-gaussian-processes/Manifest.toml index 4beb82d5d..db82f16d6 100644 --- a/tutorials/15-gaussian-processes/Manifest.toml +++ b/tutorials/15-gaussian-processes/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "6b58e2d02b44e64312fc865e24484ed638995104" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -27,27 +27,46 @@ uuid = "99985d1d-32ba-4be9-9821-2ec096f28918" version = "0.5.19" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -55,9 +74,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -71,9 +90,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -82,10 +101,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -104,9 +127,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -135,9 +158,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -147,9 +170,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -175,9 +198,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -196,26 +219,26 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "679e69c611fff422038e9e21e270c4197d49d918" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.12" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,9 +280,9 @@ weakdeps = ["InverseFunctions"] [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -302,10 +329,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -314,7 +341,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -327,9 +354,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -359,15 +386,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataDeps]] -deps = ["HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"] -git-tree-sha1 = "6e8d74545d34528c30ccd3fa0f3c00f8ed49584c" +deps = ["HTTP", "Libdl", "Reexport", "SHA", "Scratch", "p7zip_jll"] +git-tree-sha1 = "8ae085b71c462c2cb1cfedcb10c3c877ec6cf03f" uuid = "124859b0-ceae-595e-8997-d05f6a7a8dfe" -version = "0.7.11" +version = "0.7.13" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] @@ -377,9 +404,9 @@ version = "1.6.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -421,9 +448,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -435,21 +462,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -481,20 +509,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -509,9 +549,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -531,16 +571,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -559,12 +599,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -581,10 +622,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -621,37 +662,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -678,9 +719,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -712,10 +753,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -723,18 +764,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -754,9 +800,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -765,9 +811,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -783,15 +829,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -801,15 +847,15 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.KernelFunctions]] deps = ["ChainRulesCore", "Compat", "CompositionsBase", "Distances", "FillArrays", "Functors", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Random", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "TensorCore", "Test", "ZygoteRules"] -git-tree-sha1 = "d1e34d1ae87ac280a0cfca85ea3d610f25ea6a5f" +git-tree-sha1 = "654dead9bd3313311b61087ab7a0cf2b7a935cb1" uuid = "ec8451be-7e33-11e9-00cf-bbf324bd1392" -version = "0.10.57" +version = "0.10.63" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -824,27 +870,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -853,9 +909,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -871,12 +927,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -890,21 +940,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -958,10 +1013,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -975,11 +1030,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -989,6 +1045,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -999,9 +1056,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1019,34 +1076,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1058,15 +1115,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1090,13 +1147,13 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1132,10 +1189,13 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1146,12 +1206,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1161,9 +1221,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1173,9 +1233,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1184,26 +1244,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1219,7 +1279,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1229,15 +1289,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1267,15 +1327,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1295,29 +1355,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1359,20 +1419,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1412,10 +1478,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1440,28 +1506,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1470,15 +1543,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1514,19 +1587,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1545,13 +1619,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1568,7 +1643,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1584,9 +1659,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1600,25 +1675,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1633,9 +1714,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1660,25 +1741,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1694,22 +1778,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1739,9 +1812,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1784,9 +1857,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -1796,9 +1869,9 @@ version = "1.4.2" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" @@ -1807,9 +1880,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1819,9 +1892,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1970,7 +2043,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1980,9 +2053,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1991,10 +2064,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2017,7 +2090,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2038,10 +2111,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2058,12 +2131,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index f10c27030..fe1607e58 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-01-contributing-guide/Manifest.toml b/tutorials/docs-01-contributing-guide/Manifest.toml index f10c27030..fe1607e58 100644 --- a/tutorials/docs-01-contributing-guide/Manifest.toml +++ b/tutorials/docs-01-contributing-guide/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-02-contributing-style-guide/Manifest.toml b/tutorials/docs-02-contributing-style-guide/Manifest.toml index f10c27030..fe1607e58 100644 --- a/tutorials/docs-02-contributing-style-guide/Manifest.toml +++ b/tutorials/docs-02-contributing-style-guide/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml index 7ac49d08b..431c5b057 100644 --- a/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml +++ b/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "5d3b8b9eb7683443ea8ae96e6fef297715042a31" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml index f10c27030..fe1607e58 100644 --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-05-for-developers-compiler/Manifest.toml b/tutorials/docs-05-for-developers-compiler/Manifest.toml index f10c27030..fe1607e58 100644 --- a/tutorials/docs-05-for-developers-compiler/Manifest.toml +++ b/tutorials/docs-05-for-developers-compiler/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-06-for-developers-interface/Manifest.toml b/tutorials/docs-06-for-developers-interface/Manifest.toml index 0d130560a..001dfbf84 100644 --- a/tutorials/docs-06-for-developers-interface/Manifest.toml +++ b/tutorials/docs-06-for-developers-interface/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "c2c40f5436f7cfb3d611046e88c24da658e5bf55" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-07-for-developers-variational-inference/Manifest.toml b/tutorials/docs-07-for-developers-variational-inference/Manifest.toml index f10c27030..fe1607e58 100644 --- a/tutorials/docs-07-for-developers-variational-inference/Manifest.toml +++ b/tutorials/docs-07-for-developers-variational-inference/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-08-using-turing/Manifest.toml b/tutorials/docs-08-using-turing/Manifest.toml index f10c27030..fe1607e58 100644 --- a/tutorials/docs-08-using-turing/Manifest.toml +++ b/tutorials/docs-08-using-turing/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-09-using-turing-advanced/Manifest.toml b/tutorials/docs-09-using-turing-advanced/Manifest.toml index ec051a138..9213bb2a7 100644 --- a/tutorials/docs-09-using-turing-advanced/Manifest.toml +++ b/tutorials/docs-09-using-turing-advanced/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "4c0c886318004c9a56b597cb6e8faf8fe1ac07ac" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-10-using-turing-autodiff/Manifest.toml b/tutorials/docs-10-using-turing-autodiff/Manifest.toml index 9d02faacd..d91b766bc 100644 --- a/tutorials/docs-10-using-turing-autodiff/Manifest.toml +++ b/tutorials/docs-10-using-turing-autodiff/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "1d294e4a0b1aaa2dd4a0a7a26be6fadb17d7ea42" @@ -260,9 +260,9 @@ version = "1.63.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "aef70bb349b20aa81a82a19704c3ef339d4ee494" +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.22.1" +version = "1.23.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -347,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -504,9 +504,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] -git-tree-sha1 = "60a3a231813a89bd796a639d5ce389386e89f4e3" +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.24.7" +version = "0.24.9" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -672,15 +672,15 @@ version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -903,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -922,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1100,7 +1099,7 @@ version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1124,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1200,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1245,7 +1244,7 @@ version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1273,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1288,10 +1287,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1358,7 +1357,7 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] @@ -1407,22 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "27ee1c03e732c488ecce1a25f0d7da9b5d936574" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.3.3" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1490,13 +1493,14 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "09324a0ae70c52a45b91b236c62065f78b099c37" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.15.2" +version = "2.29.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" @@ -1506,6 +1510,7 @@ version = "2.15.2" [deps.SciMLBase.weakdeps] ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" @@ -1513,10 +1518,10 @@ version = "2.15.2" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.7" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1576,6 +1581,7 @@ version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1624,7 +1630,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1679,14 +1685,14 @@ deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "be414bfd80c2c91197823890c66ef4b74f5bf5fe" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.1" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1771,17 +1777,6 @@ version = "0.4.80" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" @@ -2042,7 +2037,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2089,7 +2084,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2130,12 +2125,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml index 25fbf5198..490cf513c 100644 --- a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml +++ b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "f6bac772a1c0780a37a1f9e868095eea94af1f8e" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -476,25 +504,37 @@ version = "0.6.8" [[deps.DynamicHMC]] deps = ["ArgCheck", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "LogExpFunctions", "ProgressMeter", "Random", "SimpleUnPack", "Statistics", "TensorCast"] -git-tree-sha1 = "055d04934849867c54ffa346d69dabbed470a419" +git-tree-sha1 = "9285af003a31272b4105c8e80d90b99eaf4b8c05" uuid = "bbc10e6e-7c05-544b-b16e-64fede858acb" -version = "3.4.6" +version = "3.4.7" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -509,9 +549,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -531,16 +571,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -553,12 +593,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -575,10 +616,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -615,19 +656,19 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -637,15 +678,15 @@ version = "0.1.5" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -672,9 +713,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -700,10 +741,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -711,18 +752,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -742,9 +788,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -753,9 +799,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -771,15 +817,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -789,9 +835,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -806,27 +852,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -835,9 +891,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -853,12 +909,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -878,21 +928,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -946,10 +1001,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -963,11 +1018,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -977,6 +1033,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -987,9 +1044,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1007,34 +1064,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1046,15 +1103,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1078,7 +1135,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1088,9 +1145,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1123,24 +1180,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1151,12 +1211,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1166,9 +1226,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1178,9 +1238,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1189,26 +1249,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1224,7 +1284,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1234,15 +1294,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1266,15 +1326,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1294,29 +1354,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1358,20 +1418,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1405,10 +1471,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1433,28 +1499,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1463,15 +1536,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1507,19 +1580,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1538,13 +1612,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1561,7 +1636,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1577,9 +1652,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1588,9 +1663,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.Strided]] deps = ["LinearAlgebra", "TupleTools"] @@ -1605,25 +1680,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1644,9 +1725,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1677,25 +1758,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1717,27 +1801,16 @@ git-tree-sha1 = "64df189c13692b9581924775109cb14a6b5aef8d" uuid = "24ddb15e-299a-5cc3-8414-dbddc482d9ca" version = "0.1.15" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.TupleTools]] -git-tree-sha1 = "155515ed4c4236db30049ac1495e2969cc06be9d" +git-tree-sha1 = "41d61b1c545b06279871ef1a4b5fcb2cac2191cd" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.4.3" +version = "1.5.0" [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1767,9 +1840,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1812,9 +1885,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1824,15 +1897,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1842,9 +1915,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1993,7 +2066,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2003,9 +2076,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -2014,10 +2087,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2040,7 +2113,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2061,10 +2134,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2081,12 +2154,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-12-using-turing-guide/Manifest.toml b/tutorials/docs-12-using-turing-guide/Manifest.toml index 55921a6fd..235c83af2 100644 --- a/tutorials/docs-12-using-turing-guide/Manifest.toml +++ b/tutorials/docs-12-using-turing-guide/Manifest.toml @@ -1,6 +1,6 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "b7d5f57d9eda90053bb4603ac4234cf8d9b7d1b7" @@ -266,9 +266,9 @@ version = "1.63.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "aef70bb349b20aa81a82a19704c3ef339d4ee494" +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.22.1" +version = "1.23.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -359,7 +359,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -516,9 +516,9 @@ version = "0.6.8" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] -git-tree-sha1 = "60a3a231813a89bd796a639d5ce389386e89f4e3" +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.24.7" +version = "0.24.9" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -700,15 +700,15 @@ version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -931,12 +931,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -950,21 +944,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1140,7 +1139,7 @@ version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1164,7 +1163,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1252,12 +1251,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1303,7 +1302,7 @@ version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1337,7 +1336,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1352,10 +1351,10 @@ uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1432,7 +1431,7 @@ deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] @@ -1481,22 +1480,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "27ee1c03e732c488ecce1a25f0d7da9b5d936574" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.3.3" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1558,13 +1561,14 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces"] -git-tree-sha1 = "09324a0ae70c52a45b91b236c62065f78b099c37" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.15.2" +version = "2.29.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" @@ -1574,6 +1578,7 @@ version = "2.15.2" [deps.SciMLBase.weakdeps] ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" @@ -1581,10 +1586,10 @@ version = "2.15.2" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "51ae235ff058a64815e0a2c34b1db7578a06813d" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.7" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1644,6 +1649,7 @@ version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1692,7 +1698,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1747,14 +1753,14 @@ deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -git-tree-sha1 = "be414bfd80c2c91197823890c66ef4b74f5bf5fe" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.1" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1839,17 +1845,6 @@ version = "0.4.80" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" @@ -2115,7 +2110,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2162,7 +2157,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2203,12 +2198,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml index fcde28eba..8f320ae8d 100644 --- a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml +++ b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "f00de2f83fe88b91151dd081220b759ce23173e6" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -98,9 +121,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -129,9 +152,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -141,9 +164,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -169,9 +192,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -190,9 +213,9 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -202,15 +225,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -239,10 +266,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -251,7 +278,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -285,15 +312,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -338,21 +365,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -384,20 +412,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -411,9 +451,9 @@ version = "0.1.10" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -426,21 +466,16 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" - [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" @@ -464,9 +499,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] @@ -474,9 +509,9 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] @@ -496,10 +531,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -507,18 +542,25 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -538,9 +580,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -555,9 +597,9 @@ version = "1.5.0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -567,37 +609,41 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" +version = "1.3.1" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] @@ -612,21 +658,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -649,11 +700,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -663,6 +715,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -673,9 +726,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -693,34 +746,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -734,7 +787,7 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Memoization]] deps = ["MacroTools"] @@ -759,13 +812,13 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -801,20 +854,23 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -824,25 +880,25 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PrecompileTools]] deps = ["Preferences"] @@ -852,15 +908,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -880,23 +936,23 @@ version = "1.9.0" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -934,20 +990,26 @@ uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -975,10 +1037,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1003,28 +1065,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1054,19 +1123,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1085,13 +1155,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1108,7 +1179,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1124,9 +1195,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1140,25 +1211,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1173,9 +1250,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1194,9 +1271,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] @@ -1204,9 +1281,9 @@ weakdeps = ["PDMats"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1222,22 +1299,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1267,32 +1333,32 @@ version = "0.1.3" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" diff --git a/tutorials/docs-14-using-turing-quick-start/Manifest.toml b/tutorials/docs-14-using-turing-quick-start/Manifest.toml index f10c27030..fe1607e58 100644 --- a/tutorials/docs-14-using-turing-quick-start/Manifest.toml +++ b/tutorials/docs-14-using-turing-quick-start/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml index 0151bbac4..fd65d3db7 100644 --- a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml +++ b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "d42320247f27a85a88c7c5de8259eefe9da423db" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,46 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.35" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -49,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -65,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -110,9 +133,9 @@ version = "3.5.1+1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -141,9 +164,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -153,9 +176,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -181,9 +204,9 @@ version = "0.1.1" [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -202,20 +225,20 @@ version = "0.13.7" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.8" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+1" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -231,15 +254,19 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.23.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.ChangesOfVariables]] deps = ["LinearAlgebra", "Test"] @@ -253,15 +280,15 @@ weakdeps = ["InverseFunctions"] [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.7" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.4" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] @@ -308,10 +335,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +347,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +360,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "9c4708e3ed2b799e6124b5673a712dda0b596a9b" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.3.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -365,15 +392,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -415,9 +442,9 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.11" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -429,21 +456,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -475,20 +503,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -503,9 +543,9 @@ version = "0.0.20230411+0" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.10" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,16 +565,16 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.1" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -547,12 +587,13 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" @@ -569,10 +610,10 @@ uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" version = "2.13.93+0" [[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" +deps = ["Logging", "Printf"] +git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +version = "0.4.3" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -609,37 +650,37 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] +git-tree-sha1 = "ff38ba61beff76b8f4acad8ab0c97ef73bb670cb" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.3.9+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +git-tree-sha1 = "3458564589be207fa6a77dbbf8b97674c9836aab" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.2" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "77f81da2964cc9fa7c0127f941e8bce37f7f1d70" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.2+0" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -666,9 +707,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +git-tree-sha1 = "ac7b73d562b8f4287c3b67b4c66a5395a19c1ae8" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.2" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] @@ -694,10 +735,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -705,18 +746,23 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -736,9 +782,9 @@ uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -747,9 +793,9 @@ version = "1.0.0" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.7" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] @@ -765,15 +811,15 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "3336abae9a713d2210bb57ab484b1e065edd7d23" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.0.2+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -783,9 +829,9 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -800,27 +846,37 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "3.0.0+1" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" +version = "15.0.7+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -829,9 +885,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.1+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.3.1" [[deps.Latexify]] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] @@ -847,12 +903,6 @@ version = "0.16.1" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -866,21 +916,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -934,10 +989,10 @@ uuid = "89763e89-9b03-5906-acba-b20f662cd828" version = "4.5.1+1" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e5edc369a598dfde567269dc6add5812cfa10cd5" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.39.3+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -951,11 +1006,12 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,6 +1021,7 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" @@ -975,9 +1032,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -995,34 +1052,34 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "03ae109be87f460fe3c96b8a0dbbf9c7bf840bd5" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.2" +version = "1.9.5" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1034,15 +1091,15 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.Measures]] git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" @@ -1066,7 +1123,7 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" [[deps.MultivariateStats]] deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] @@ -1076,9 +1133,9 @@ version = "0.10.2" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1111,24 +1168,27 @@ version = "1.0.0" [[deps.NearestNeighbors]] deps = ["Distances", "StaticArrays"] -git-tree-sha1 = "2c3726ceb3388917602169bed973dbc97f1b51a8" +git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" -version = "0.4.13" +version = "0.4.16" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.Observables]] -git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" +git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" -version = "0.5.4" +version = "0.5.5" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1139,12 +1199,12 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1154,9 +1214,9 @@ version = "1.4.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1166,9 +1226,9 @@ version = "0.5.5+0" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1177,26 +1237,26 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.2+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.42.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "3d8af7d689bd228a3a6c2298a4e6d5f5944accb8" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.26" +version = "0.11.31" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -1212,7 +1272,7 @@ version = "0.42.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1222,15 +1282,15 @@ version = "3.1.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.5" +version = "1.4.0" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "c4fa93d7d66acad8f6f4ff439576da9d2e890ee0" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.39.0" +version = "1.40.1" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1254,15 +1314,15 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.7" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] @@ -1282,29 +1342,29 @@ version = "1.9.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" +git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" +version = "6.5.3+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1346,20 +1406,26 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1393,10 +1459,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1421,28 +1487,35 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.4.0" +version = "2.29.0" [deps.SciMLBase.extensions] + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -1451,15 +1524,15 @@ version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" +version = "1.4.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1495,19 +1568,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1526,13 +1600,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1549,7 +1624,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1565,9 +1640,9 @@ version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,9 +1651,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "3b1dcbf62e469a67f6733ae493401e53d92ff543" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1587,25 +1662,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1626,9 +1707,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1653,25 +1734,28 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1687,22 +1771,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1732,9 +1805,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" +git-tree-sha1 = "3c793be6df9dd77a0cf49d80984ef9ff996948fa" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" +version = "1.19.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -1777,9 +1850,9 @@ version = "1.21.0+1" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.31.0+0" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] @@ -1789,15 +1862,15 @@ version = "0.6.6" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" +git-tree-sha1 = "07e470dabc5a6a4254ffebc29a1b3fc01464e105" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" +version = "2.12.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1807,9 +1880,9 @@ version = "1.1.34+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "37195dcb94a5970397ad425b95a9a26d0befce3a" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.6.0+0" [[deps.Xorg_libICE_jll]] deps = ["Libdl", "Pkg"] @@ -1958,7 +2031,7 @@ version = "1.5.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1968,9 +2041,9 @@ version = "1.5.5+0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] @@ -1979,10 +2052,10 @@ uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" version = "3.2.9+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.43.0+0" [[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2005,7 +2078,7 @@ version = "0.15.1+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2026,10 +2099,10 @@ uuid = "36db933b-70db-51c0-b978-0f229ee0e533" version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "1ea2ebe8ffa31f9c324e8c1d6e86b4165b84a024" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.43+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2046,12 +2119,12 @@ version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml index 6a0fc46ca..347249341 100644 --- a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml +++ b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.1" manifest_format = "2.0" project_hash = "6559f27b923d65d4f9f21538db968bd03760e383" [[deps.ADTypes]] -git-tree-sha1 = "f5c25e8a5b29b5e941b7408bc8cc79fea4d9ef9a" +git-tree-sha1 = "41c37aa88889c171f1300ceac1313c06e891d245" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.6" +version = "0.2.6" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,27 +21,27 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "b0489adc45a7c8cf0d8e2ddf764f89c1c3decebd" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.2.0" [[deps.AbstractPPL]] deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +git-tree-sha1 = "917ad8da4becae82028aba80b7e25197f0c76dd1" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.7.0" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +git-tree-sha1 = "cb96992f1bec110ad211b7e410e57ddf7944c16f" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.33" +version = "0.1.35" [deps.Accessors.extensions] AccessorsAxisKeysExt = "AxisKeys" @@ -58,9 +58,9 @@ version = "0.1.33" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "0fb305e0253fd4e833d486914367a2ee2c2e78d0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -68,9 +68,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "dfa0e3508fc3df81d28624b328f3b937c1df8bc2" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.1" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -84,9 +84,9 @@ version = "0.5.5" [[deps.AdvancedMH]] deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +git-tree-sha1 = "16589dbdd36c782ff01700908e962b303474f641" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.1" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -95,10 +95,14 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "StatsFuns"] +git-tree-sha1 = "672f7ce648e06f93fceefde463c5855d77b6915a" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.5.4" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] @@ -117,9 +121,9 @@ version = "1.1.1" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -148,9 +152,9 @@ version = "0.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] @@ -160,9 +164,9 @@ version = "0.4.7" [[deps.BangBang]] deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.3.40" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -186,11 +190,17 @@ git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" +[[deps.BenchmarkTools]] +deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" +uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" +version = "1.5.0" + [[deps.Bijectors]] deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +git-tree-sha1 = "199dc2c4151db557549a0ad8888ce1a60337ff42" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.13.8" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" @@ -208,10 +218,16 @@ version = "0.13.7" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.Bzip2_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" +version = "1.0.8+1" + [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.Calculus]] deps = ["LinearAlgebra"] @@ -221,15 +237,15 @@ version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "4e42872be98fa3343c4f8458cbda8c5c6a6fa97c" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.63.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" +git-tree-sha1 = "575cd02e080939a33b6df6c5853d14924c08e35b" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.18.0" +version = "1.23.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -245,6 +261,18 @@ weakdeps = ["InverseFunctions"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" +[[deps.CodecBzip2]] +deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"] +git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb" +uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" +version = "0.8.2" + +[[deps.CodecZlib]] +deps = ["TranscodingStreams", "Zlib_jll"] +git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73" +uuid = "944b1d66-785c-5afd-91f1-9de20f533193" +version = "0.7.4" + [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" @@ -262,10 +290,10 @@ uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "c955881e3c981181362ae4088b35995446298b80" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.14.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -274,7 +302,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.0+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -308,21 +336,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1fb174f0d48fe7d142e1109a10636bc1d14f5ac2" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.17" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -367,21 +389,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7c302d7a5fec5214eb8a5a4c466dcf7a51fcf169" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.107" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "060a19f3f879773399a7011676eb273ccc265241" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.54" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -413,20 +436,32 @@ uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" version = "0.6.8" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test"] +git-tree-sha1 = "6fe2424f8f47c0fecd01349a2a77987f3c988393" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.24.9" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLReverseDiffExt = ["ReverseDiff"] + DynamicPPLZygoteRulesExt = ["ZygoteRules"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" @@ -445,9 +480,9 @@ version = "0.1.1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -460,20 +495,21 @@ uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "35f0c0f345bff2c6d636f95fdb136323b5a796ef" +git-tree-sha1 = "5b93957f6dcd33fc343044af3d48c215be2562f1" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.7.0" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.9.3" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" +git-tree-sha1 = "73d1214fec245096717847c62d389a5d2ac86504" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.21.1" +version = "2.22.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -487,15 +523,15 @@ version = "2.21.1" [[deps.Folds]] deps = ["Accessors", "BangBang", "Baselet", "DefineSingletons", "Distributed", "ExternalDocstrings", "InitialValues", "MicroCollections", "Referenceables", "Requires", "Test", "ThreadedScans", "Transducers"] -git-tree-sha1 = "638109532de382a1f99b1aae1ca8b5d08515d85a" +git-tree-sha1 = "7eb4bc88d8295e387a667fd43d67c157ddee76cf" uuid = "41a02a25-b8f0-4f67-bc48-60067656b558" -version = "0.2.8" +version = "0.2.10" -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" + [deps.Folds.extensions] + FoldsOnlineStatsBaseExt = "OnlineStatsBase" + + [deps.Folds.weakdeps] + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] @@ -520,9 +556,9 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +git-tree-sha1 = "166c544477f97bbadc7179ede1c1868e0e9b426b" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.4.7" [[deps.Future]] deps = ["Random"] @@ -530,9 +566,33 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" + +[[deps.HDF5]] +deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" +uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" +version = "0.17.1" + + [deps.HDF5.extensions] + MPIExt = "MPI" + + [deps.HDF5.weakdeps] + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + +[[deps.HDF5_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"] +git-tree-sha1 = "e4591176488495bf44d7456bd73179d87d5e6eab" +uuid = "0234f1f7-429e-5d53-9886-15a909be8d59" +version = "1.14.3+1" + +[[deps.Hwloc_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ca0f6bf568b4bfc807e7537f081c81e35ceca114" +uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" +version = "2.10.0+0" [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] @@ -545,12 +605,6 @@ git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" -[[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" - [[deps.InplaceOps]] deps = ["LinearAlgebra", "Test"] git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" @@ -558,10 +612,10 @@ uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" version = "0.3.0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "5fdf2fe6724d8caabf43b557b84ce53f3b7e2f6b" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +version = "2024.0.2+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -569,18 +623,25 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.15.1" + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] @@ -595,14 +656,14 @@ uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.3.0" [[deps.IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -615,11 +676,17 @@ git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" version = "1.5.0" +[[deps.JSON]] +deps = ["Dates", "Mmap", "Parsers", "Unicode"] +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +version = "0.21.4" + [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +git-tree-sha1 = "c7753cc3febe006708ce6798482004241f7d890b" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.17" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -629,37 +696,41 @@ version = "0.9.10" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +git-tree-sha1 = "fee018a29b60733876eb557804b5b109dd3dd8a7" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.8" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "ddab4d40513bce53c8e3157825e245224f74fae7" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" +version = "6.6.0" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "0.0.29+0" [[deps.LRUCache]] -git-tree-sha1 = "d36130483e3b6e4cd88d81633b596563264f15db" +git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" uuid = "8ac3fa9e-de4c-5943-b1dc-09c6b5f20637" -version = "1.5.0" +version = "1.6.1" +weakdeps = ["Serialization"] + + [deps.LRUCache.extensions] + SerializationExt = ["Serialization"] [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" - -[[deps.Lazy]] -deps = ["MacroTools"] -git-tree-sha1 = "1370f8202dac30758f3c345f9909b97f53d87d3f" -uuid = "50d2b5c4-7a5e-59d5-8109-a42b560f39c0" -version = "0.15.1" +version = "1.3.1" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] @@ -674,21 +745,26 @@ version = "0.2.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" -version = "0.6.3" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "7.84.0+0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.10.2+0" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -717,9 +793,9 @@ version = "2.1.1" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "7841ebecc60703fa978cbe9623e1a37dcaf96b75" +git-tree-sha1 = "9c50732cd0f188766b6217ed6a2ebbdaf9890029" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.6.1" +version = "1.7.0" [deps.LogDensityProblemsAD.extensions] LogDensityProblemsADADTypesExt = "ADTypes" @@ -743,9 +819,9 @@ version = "1.6.1" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "18144f3e9cbe9b15b070288eef858f71b291ce37" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.27" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -763,34 +839,52 @@ uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.0.3" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "Formatting", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "8778ea7283a0bf0d7e507a0235adfff38071493b" +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "d28056379864318172ff4b7958710cfddd709339" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.3" +version = "6.0.6" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "56c61163890d15d45901de423be0ad91855a2cd7" +git-tree-sha1 = "8ba8b1840d3ab5b38e7c71c23c3193bb5cbc02b5" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.7" +version = "0.3.10" [[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "eb006abbd7041c28e0d16260e50a24f8f9104913" +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "72dc3cf284559eb8f53aa593fe62cb33f83ed0c0" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.2.0+0" +version = "2024.0.0+0" [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "381d99f0af76d98f50bd5512dcf96a99c13f8223" +git-tree-sha1 = "14bd8088cf7cd1676aa83a57004f8d23d43cd81e" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.9.3" +version = "1.9.5" + +[[deps.MPICH_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "656036b9ed6f942d35e536e249600bc31d0f9df8" +uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" +version = "4.2.0+0" + +[[deps.MPIPreferences]] +deps = ["Libdl", "Preferences"] +git-tree-sha1 = "8f6af051b9e8ec597fa09d8885ed79fd582f33c9" +uuid = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267" +version = "0.1.10" + +[[deps.MPItrampoline_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "77c3bd69fdb024d75af38713e883d0f249ce19c2" +uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" +version = "5.3.2+0" [[deps.MacroTools]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48" +git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.11" +version = "0.5.13" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -801,16 +895,22 @@ version = "0.4.2" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[deps.MathOptInterface]] +deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] +git-tree-sha1 = "679c1aec6934d322783bd15db4d18f898653be4f" +uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" +version = "1.27.0" + [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+0" +version = "2.28.2+1" [[deps.MicroCanonicalHMC]] -deps = ["AbstractMCMC", "DataFrames", "Distributed", "Distributions", "DistributionsAD", "DynamicPPL", "ForwardDiff", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "MCMCDiagnosticTools", "ProgressMeter", "Random", "Statistics"] -git-tree-sha1 = "7f48d0dbedadefa9ff57b96defa08b92ffb2bf6a" +deps = ["AbstractMCMC", "Adapt", "Distributions", "ForwardDiff", "HDF5", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "MCMCDiagnosticTools", "Markdown", "ProgressMeter", "Random", "Statistics"] +git-tree-sha1 = "36c2a6c87b7fbb68b3be89d2ea07051aeb4f3690" uuid = "234d2aa0-2291-45f7-9047-6fa6f316b0a8" -version = "0.1.0" +version = "0.1.3" [[deps.MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] @@ -818,6 +918,12 @@ git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" version = "0.1.4" +[[deps.MicrosoftMPI_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01" +uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" +version = "10.1.4+2" + [[deps.Missings]] deps = ["DataAPI"] git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" @@ -829,7 +935,13 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.10.11" +version = "2023.1.10" + +[[deps.MutableArithmetics]] +deps = ["LinearAlgebra", "SparseArrays", "Test"] +git-tree-sha1 = "302fd161eb1c439e4115b51ae456da4e9984f130" +uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" +version = "1.4.1" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -839,9 +951,9 @@ version = "7.8.3" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Pkg", "Random", "Requires", "Statistics"] -git-tree-sha1 = "3bc568de99214f72a76c7773ade218819afcc36e" +git-tree-sha1 = "877f15c331337d54cf24c797d5bcb2e48ce21221" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.7" +version = "0.9.12" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -877,20 +989,35 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" +git-tree-sha1 = "6a731f2b5c03157418a20c12195eb4b74c8f8621" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.10" +version = "1.13.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.21+4" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+0" +version = "0.8.1+2" + +[[deps.OpenMPI_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" +uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" +version = "4.1.6+0" + +[[deps.OpenSSL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "60e3045590bd104a16fefb12836c00c0ef8c7f8c" +uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" +version = "3.0.13+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -899,22 +1026,22 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" [[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" +deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "MathOptInterface", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "d024bfb56144d947d4fafcd9cb5cafbe3410b133" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.8" +version = "1.9.2" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "34205b1204cc83c43cd9cfe53ffbd3b310f6e8c5" +git-tree-sha1 = "264b061c1903bc0fe9be77cb9050ebacff66bb63" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.1" +version = "0.3.2" [[deps.Optimization]] -deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "f59193f79f8310e5eaad309ccfa8f2fa06b6703b" +deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] +git-tree-sha1 = "6da27ba028619343591106e1024677c6596bd890" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "3.19.1" +version = "3.23.0" [deps.Optimization.extensions] OptimizationEnzymeExt = "Enzyme" @@ -939,26 +1066,26 @@ version = "3.19.1" [[deps.OptimizationOptimJL]] deps = ["Optim", "Optimization", "Reexport", "SparseArrays"] -git-tree-sha1 = "d8a989697ad1037258238004306057ca866bc337" +git-tree-sha1 = "6cdc08135141c153b49372de47416ac15fed42de" uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.1.12" +version = "0.2.2" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.6.3" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "66b2fcd977db5329aa35cac121e5b94dd6472198" +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.28" +version = "0.11.31" [[deps.PSIS]] deps = ["LinearAlgebra", "LogExpFunctions", "Printf", "RecipesBase", "Statistics"] -git-tree-sha1 = "72a16ef4d76e0cb071d704ff50dc086b6715d2f9" +git-tree-sha1 = "336b7fb8f3c767a934378b7edb2ca8687bee1515" uuid = "ce719bf2-d5d0-4fb9-925d-10a81b42ad04" -version = "0.7.2" +version = "0.9.5" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -968,26 +1095,31 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" +version = "2.8.1" [[deps.Pathfinder]] -deps = ["Accessors", "Distributions", "Folds", "ForwardDiff", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"] -git-tree-sha1 = "9276ab48cb3a900e0bca214912c756d52625dadb" +deps = ["Distributions", "Folds", "ForwardDiff", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"] +git-tree-sha1 = "c1847521071c9c0eadc28dd0564b288a1968ad7a" uuid = "b1d3bc72-d0e7-4279-b92f-7fa5d6d2d454" -version = "0.7.0" +version = "0.8.3" + + [deps.Pathfinder.extensions] + PathfinderDynamicHMCExt = "DynamicHMC" + PathfinderTuringExt = ["Accessors", "DynamicPPL", "MCMCChains", "Turing"] + + [deps.Pathfinder.weakdeps] + Accessors = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" + DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" + DynamicPPL = "366bfd00-2699-11ea-058f-f148b4cae6d8" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.9.2" - -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" +version = "1.10.0" [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] @@ -1003,20 +1135,24 @@ version = "1.2.0" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" +git-tree-sha1 = "9e8fed0505b0c15b4c1295fd59ea47b411c019cf" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.1" +version = "1.4.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "6842ce83a836fbbc0cfeca0b5a4de1a4dcbdb8d1" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.2.8" +version = "2.3.1" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +[[deps.Profile]] +deps = ["Printf"] +uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" + [[deps.ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" @@ -1031,23 +1167,23 @@ version = "1.9.0" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9ebcd48c498668c7fa0e97a9cae873fbee7bfee1" +git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.1" +version = "2.9.4" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "552f30e847641591ba3f39fd1bed559b9deb0ef3" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.1" +version = "1.7.0" [[deps.RandomNumbers]] deps = ["Random", "Requires"] @@ -1085,20 +1221,26 @@ uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "dc428bb59c20dafd1ec500c3432b9e3d7e78e7f3" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.10" +version = "3.10.1" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1109,9 +1251,9 @@ version = "1.2.2" [[deps.Referenceables]] deps = ["Adapt"] -git-tree-sha1 = "e681d3bfa49cd46c3c161505caddf20f0e62aaa9" +git-tree-sha1 = "02d31ad62838181c1a3a5fd23a1ce5914a643601" uuid = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -version = "0.1.2" +version = "0.1.3" [[deps.Requires]] deps = ["UUIDs"] @@ -1132,10 +1274,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.Roots]] -deps = ["ChainRulesCore", "CommonSolve", "Printf", "Setfield"] -git-tree-sha1 = "06b5ac80ff1b88bd82df92c1c1875eea3954cd6e" +deps = ["Accessors", "ChainRulesCore", "CommonSolve", "Printf"] +git-tree-sha1 = "754acd3031a9f2eaf6632ba4850b1c01fe4460c1" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.0.20" +version = "2.1.2" [deps.Roots.extensions] RootsForwardDiffExt = "ForwardDiff" @@ -1160,34 +1302,41 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "3a281a9fce9cd62b849d7f16e412933a5fe755cb" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.98.1" +version = "2.29.0" [deps.SciMLBase.extensions] - ZygoteExt = "Zygote" + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "Lazy", "LinearAlgebra", "Setfield", "SparseArrays", "StaticArraysCore", "Tricks"] -git-tree-sha1 = "65c2e6ced6f62ea796af251eb292a0e131a3613b" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.6" +version = "0.3.8" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" version = "3.0.0" -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.0" - [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1211,19 +1360,20 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.0" +version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1242,13 +1392,14 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "bf074c045d3d5ffd956fa0a461da38a44685d6b2" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.3" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] @@ -1265,7 +1416,7 @@ version = "3.2.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1275,15 +1426,15 @@ version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.2" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1297,25 +1448,31 @@ uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.3.4" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +git-tree-sha1 = "251bb311585143931a306175c3b7ced220300578" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.8" [[deps.TOML]] deps = ["Dates"] @@ -1330,9 +1487,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.11.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1357,19 +1514,28 @@ version = "0.1.0" [[deps.Tracker]] deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" +git-tree-sha1 = "5c942be30a85ac75d14e9e527b55504031e1bbd3" uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" +version = "0.2.31" weakdeps = ["PDMats"] [deps.Tracker.extensions] TrackerPDMatsExt = "PDMats" +[[deps.TranscodingStreams]] +git-tree-sha1 = "54194d92959d8ebaa8e26227dbe3cdefcdcd594f" +uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" +version = "0.10.3" +weakdeps = ["Random", "Test"] + + [deps.TranscodingStreams.extensions] + TestExt = ["Test", "Random"] + [[deps.Transducers]] deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.80" [deps.Transducers.extensions] TransducersBlockArraysExt = "BlockArrays" @@ -1385,22 +1551,11 @@ version = "0.4.78" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "7cf779c99fbf6b2adfd3b5650ffdac21c0165489" +deps = ["ADTypes", "AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "afb5bb484e67bb4179507baff464da9c4d18b307" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.3" +version = "0.30.5" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" @@ -1435,32 +1590,38 @@ version = "0.1.3" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.0.0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.5" + +[[deps.libaec_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" +uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" +version = "1.1.2+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.8.0+1" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2"