diff --git a/Manifest.toml b/Manifest.toml index f547f03e8..8961d6461 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,17 +2,12 @@ julia_version = "1.10.4" manifest_format = "2.0" -project_hash = "5c04d0df46fb1c805bf8047598793163b46031af" +project_hash = "4dbb593d041b187abd261fc4e92a2df5baf55b80" [[deps.ADTypes]] -git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0" +git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.7.1" -weakdeps = ["ChainRulesCore", "EnzymeCore"] - - [deps.ADTypes.extensions] - ADTypesChainRulesCoreExt = "ChainRulesCore" - ADTypesEnzymeCoreExt = "EnzymeCore" +version = "0.2.7" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -71,9 +66,9 @@ version = "0.1.37" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.4" +version = "3.7.2" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -119,9 +114,9 @@ weakdeps = ["Libtask"] [[deps.AdvancedVI]] deps = ["ADTypes", "Bijectors", "DiffResults", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "187f67ab998f25208651262fee9539d845016b26" +git-tree-sha1 = "3e97de1a2ccce08978cd80570d8cbb9ff3f08bd3" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.5" +version = "0.2.6" weakdeps = ["Enzyme", "Flux", "ReverseDiff", "Zygote"] [deps.AdvancedVI.extensions] @@ -164,20 +159,16 @@ uuid = "68821587-b530-5797-8361-c406ea357684" version = "3.5.1+1" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "f54c23a5d304fb87110de62bace7777d59088c34" +deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.15.0" +version = "7.7.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = "CUDSS" - ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceReverseDiffExt = "ReverseDiff" - ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -185,11 +176,7 @@ version = "7.15.0" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -226,9 +213,9 @@ version = "0.4.7" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "71f605effb24081b09cae943ba39ef9ca90c04f4" +git-tree-sha1 = "0b816941273b5b162be122a6c94d706e3b3125ca" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.7.2" +version = "0.17.38" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -264,21 +251,36 @@ git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" +[[deps.BenchmarkTools]] +deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" +uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" +version = "1.5.0" + [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "49491db48b1c70eefa5115e626100dbd6c0ff4c0" +deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "6e686c360af8375162531708acb824ae1182b1d5" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.12" -weakdeps = ["DistributionsAD", "ForwardDiff", "LazyArrays", "ReverseDiff", "Tracker", "Zygote"] +version = "0.13.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" BijectorsReverseDiffExt = "ReverseDiff" + BijectorsTapirExt = "Tapir" BijectorsTrackerExt = "Tracker" BijectorsZygoteExt = "Zygote" + [deps.Bijectors.weakdeps] + DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" @@ -291,16 +293,10 @@ uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.6" [[deps.BoundaryValueDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools"] -git-tree-sha1 = "6e039db00f02e8880f7f614fa82529b452404e57" +deps = ["ArrayInterface", "BandedMatrices", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "NonlinearSolve", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "TruncatedStacktraces", "UnPack"] +git-tree-sha1 = "f7392ce20e6dafa8fee406142b1764de7d7cd911" uuid = "764a87c0-6b3e-53db-9096-fe964310641d" -version = "5.9.1" - - [deps.BoundaryValueDiffEq.extensions] - BoundaryValueDiffEqODEInterfaceExt = "ODEInterface" - - [deps.BoundaryValueDiffEq.weakdeps] - ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" +version = "4.0.1" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -398,6 +394,12 @@ git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" version = "0.15.7" +[[deps.CodecBzip2]] +deps = ["Bzip2_jll", "TranscodingStreams"] +git-tree-sha1 = "e7c529cc31bb85b97631b922fa2e6baf246f5905" +uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" +version = "0.8.4" + [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" @@ -448,11 +450,6 @@ git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.0" -[[deps.CommonWorldInvalidations]] -git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" -uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.0.0" - [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" @@ -591,9 +588,9 @@ version = "0.1.2" [[deps.DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] -git-tree-sha1 = "f84e4ef36cb68b77fe10c77bdf59c980709f6fdf" +git-tree-sha1 = "e40378efd2af7658d0a0579aa9e15b17137368f4" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.47.4" +version = "5.44.0" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -608,44 +605,38 @@ uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" version = "0.4.0" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "72950e082d2241a1da1c924147943e2918471af9" +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +git-tree-sha1 = "0d9982e8dee851d519145857e79a17ee33ede154" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.152.2" +version = "6.130.0" [deps.DiffEqBase.extensions] - DiffEqBaseCUDAExt = "CUDA" - DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" - DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" DiffEqBaseReverseDiffExt = "ReverseDiff" - DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" + DiffEqBaseZygoteExt = "Zygote" [deps.DiffEqBase.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "91e10deadcf1e33168bac3140eb0ea8cc4dfa5d7" +deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "d0b94b3694d55e7eedeee918e7daee9e3b873399" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.7.0" +version = "2.35.0" weakdeps = ["OrdinaryDiffEq", "Sundials"] [[deps.DiffEqNoiseProcess]] @@ -672,45 +663,9 @@ version = "1.15.1" [[deps.DifferentialEquations]] deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] -git-tree-sha1 = "81042254a307980b8ab5b67033aca26c2e157ebb" +git-tree-sha1 = "96a19f498504e4a3b39524196b73eb60ccef30e9" uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa" -version = "7.13.0" - -[[deps.DifferentiationInterface]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "5fd57942dde7449335f585b3a4236e1fa2de0fd5" -uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.12" - - [deps.DifferentiationInterface.extensions] - DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" - DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = "Enzyme" - DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" - DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" - DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = "ForwardDiff" - DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" - DifferentiationInterfaceReverseDiffExt = "ReverseDiff" - DifferentiationInterfaceSymbolicsExt = "Symbolics" - DifferentiationInterfaceTapirExt = "Tapir" - DifferentiationInterfaceTrackerExt = "Tracker" - DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] - - [deps.DifferentiationInterface.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" - FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" - FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tapir = "07d77754-e150-4737-8c94-cd238a1fb45b" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +version = "7.10.0" [[deps.DispatchDoctor]] deps = ["MacroTools", "Preferences"] @@ -755,7 +710,6 @@ deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "Fil git-tree-sha1 = "f4dd7727b07b4b7fff5ff4149118ee06e83dfab7" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" version = "0.6.55" -weakdeps = ["ForwardDiff", "LazyArrays", "ReverseDiff", "Tracker"] [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -763,6 +717,12 @@ weakdeps = ["ForwardDiff", "LazyArrays", "ReverseDiff", "Tracker"] DistributionsADReverseDiffExt = "ReverseDiff" DistributionsADTrackerExt = "Tracker" + [deps.DistributionsAD.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" @@ -788,9 +748,9 @@ version = "3.4.7" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "c19523087706fe315f297252f54f3f6a2ae7ce85" +git-tree-sha1 = "79ff677df43bbad59ee704819ec6ede5a9c71b29" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.27.2" +version = "0.28.3" weakdeps = ["ChainRulesCore", "EnzymeCore", "ForwardDiff", "MCMCChains", "ReverseDiff", "ZygoteRules"] [deps.DynamicPPL.extensions] @@ -820,28 +780,18 @@ version = "1.0.4" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "Preferences", "Printf", "Random"] -git-tree-sha1 = "8a795c432ab969250d3f325e225f8320e5f4e503" +git-tree-sha1 = "3fb48f9c18de1993c477457265b85130756746ae" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.12.30" +version = "0.11.20" +weakdeps = ["SpecialFunctions"] [deps.Enzyme.extensions] - EnzymeBFloat16sExt = "BFloat16s" - EnzymeChainRulesCoreExt = "ChainRulesCore" - EnzymeLogExpFunctionsExt = "LogExpFunctions" EnzymeSpecialFunctionsExt = "SpecialFunctions" - EnzymeStaticArraysExt = "StaticArrays" - - [deps.Enzyme.weakdeps] - BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" - SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "8f205a601760f4798a10f138c3940f0451d95188" +git-tree-sha1 = "1bc328eec34ffd80357f84a84bb30e4374e9bd60" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.8" +version = "0.6.6" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -849,9 +799,9 @@ weakdeps = ["Adapt"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "7fc2bc158446ff552092e239750244e13566c451" +git-tree-sha1 = "32d418c804279c60dd38ac7868126696f3205a4f" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.143+0" +version = "0.0.102+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -882,12 +832,6 @@ git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.Expronicon]] -deps = ["MLStyle", "Pkg", "TOML"] -git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" -uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" -version = "0.8.5" - [[deps.ExternalDocstrings]] git-tree-sha1 = "1224740fc4d07c989949e1c1b508ebd49a65a5f6" uuid = "e189563c-0753-4f5e-ad5c-be4293c83fb4" @@ -929,17 +873,11 @@ git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" version = "0.1.1" -[[deps.FastAlmostBandedMatrices]] -deps = ["ArrayInterface", "ArrayLayouts", "BandedMatrices", "ConcreteStructs", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "PrecompileTools", "Reexport"] -git-tree-sha1 = "a92b5820ea38da3b50b626cc55eba2b074bb0366" -uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e" -version = "0.1.3" - [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "0.2.8" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -980,10 +918,10 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] FillArraysStatisticsExt = "Statistics" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Setfield", "SparseArrays"] -git-tree-sha1 = "f9219347ebf700e77ca1d48ef84e4a82a6701882" +deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] +git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.24.0" +version = "2.23.1" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -1003,21 +941,19 @@ version = "0.8.5" [[deps.Flux]] deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] -git-tree-sha1 = "a3aa4744279a4c84e4ebb3751b25d5c65445e77c" +git-tree-sha1 = "edacf029ed6276301e455e34d7ceeba8cc34078a" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.14.18" +version = "0.14.16" [deps.Flux.extensions] FluxAMDGPUExt = "AMDGPU" FluxCUDAExt = "CUDA" FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] - FluxEnzymeExt = "Enzyme" FluxMetalExt = "Metal" [deps.Flux.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" @@ -1107,21 +1043,21 @@ version = "1.9.0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "a74c3f1cf56a3dfcdef0605f8cdb7015926aae30" +git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.3.0" +version = "9.1.0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.6" +version = "0.1.5" [[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "ab29216184312f99ff957b32cd63c2fe9c928b91" +deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] +git-tree-sha1 = "a846f297ce9d09ccba02ead0cae70690e072a119" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.26.7" +version = "0.25.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] @@ -1206,16 +1142,6 @@ git-tree-sha1 = "8e070b599339d622e9a081d17230d74a5c473293" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" version = "0.1.17" -[[deps.Hwloc]] -deps = ["CEnum", "Hwloc_jll", "Printf"] -git-tree-sha1 = "6a3d80f31ff87bc94ab22a7b8ec2f263f9a6a583" -uuid = "0e44f5e4-bd66-52a0-8798-143a42290a1d" -version = "3.3.0" -weakdeps = ["AbstractTrees"] - - [deps.Hwloc.extensions] - HwlocTrees = "AbstractTrees" - [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "5e19e1e4fa3e71b774ce746274364aef0234634e" @@ -1315,9 +1241,9 @@ uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.3.0" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.1.1" [[deps.IterTools]] git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" @@ -1360,23 +1286,26 @@ uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" [[deps.JumpProcesses]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "f8235862db5cf813a52859ff82205d0f22f09a64" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "UnPack"] +git-tree-sha1 = "c451feb97251965a9fe40bacd62551a72cc5902c" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.13.3" +version = "9.10.1" weakdeps = ["FastBroadcast"] + [deps.JumpProcesses.extensions] + JumpProcessFastBroadcastExt = "FastBroadcast" + [[deps.KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" +git-tree-sha1 = "884c2968c2e8e7e6bf5956af88cb46aa745c854b" uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.6.0" +version = "0.4.1" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "0fac59881e91c7233a9b0d47f4b7d9432e534f0f" +git-tree-sha1 = "ed7167240f40e62d97c1f5f7735dea6de3cc5c49" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.23" +version = "0.9.18" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -1406,12 +1335,6 @@ git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.2+0" -[[deps.LBFGSB]] -deps = ["L_BFGS_B_jll"] -git-tree-sha1 = "e2e6f53ee20605d0ea2be473480b7480bd5091b5" -uuid = "5be7bae1-8223-5378-bac3-9e7378a2f6e6" -version = "0.4.1" - [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" @@ -1420,9 +1343,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "2470e69781ddd70b8878491233cd09bc1bd7fc96" +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "8.1.0" +version = "6.6.3" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1432,9 +1355,9 @@ version = "8.1.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "597d1c758c9ae5d985ba4202386a607c675ee700" +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.31+0" +version = "0.0.29+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1457,12 +1380,6 @@ git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.2+0" -[[deps.L_BFGS_B_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "77feda930ed3f04b2b0fbb5bea89e69d3677c6b0" -uuid = "81d17ec3-03a1-5e46-b53e-bddc35a13473" -version = "3.0.1+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1490,16 +1407,6 @@ git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" version = "0.1.17" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "MatrixFactorizations", "SparseArrays"] -git-tree-sha1 = "35079a6a869eecace778bcda8641f9a54ca3a828" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "1.10.0" -weakdeps = ["StaticArrays"] - - [deps.LazyArrays.extensions] - LazyArraysStaticArraysExt = "StaticArrays" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1620,41 +1527,32 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "CpuId", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "ee625f4053362526950661ce3022c7a483c6f8e5" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "9f27ba34f5821a0495efb09ea3a465c31326495a" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.32.0" +version = "2.10.0" [deps.LinearSolve.extensions] - LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" - LinearSolveCUDSSExt = "CUDSS" - LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"] - LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"] + LinearSolveEnzymeExt = "Enzyme" LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolvePardisoExt = "Pardiso" - LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" [deps.LinearSolve.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" [[deps.LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random"] @@ -1720,118 +1618,76 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] SpecialFunctionsExt = "SpecialFunctions" -[[deps.LossFunctions]] -deps = ["Markdown", "Requires", "Statistics"] -git-tree-sha1 = "df9da07efb9b05ca7ef701acec891ee8f73c99e2" -uuid = "30fc2ffe-d236-52d8-8643-a9d8f7c094a7" -version = "0.11.1" -weakdeps = ["CategoricalArrays"] - - [deps.LossFunctions.extensions] - LossFunctionsCategoricalArraysExt = "CategoricalArrays" - [[deps.Lux]] -deps = ["ADTypes", "Adapt", "ArgCheck", "ArrayInterface", "ChainRulesCore", "Compat", "ConcreteStructs", "ConstructionBase", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LossFunctions", "LuxCore", "LuxDeviceUtils", "LuxLib", "MacroTools", "Markdown", "NNlib", "Optimisers", "Preferences", "Random", "Reexport", "Setfield", "Statistics", "UnrolledUtilities", "WeightInitializers"] -git-tree-sha1 = "80db23a3cb1de02c82b603d10bb013e0e87e56d4" +deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "ConcreteStructs", "ConstructionBase", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxDeviceUtils", "LuxLib", "MacroTools", "Markdown", "Optimisers", "PrecompileTools", "Random", "Reexport", "Setfield", "SparseArrays", "Statistics", "TruncatedStacktraces", "WeightInitializers"] +git-tree-sha1 = "979b0437f42453b65175c6390314b2fd76eefbd4" uuid = "b2108857-7c20-44ae-9111-449ecde12c47" -version = "0.5.63" +version = "0.5.16" [deps.Lux.extensions] + LuxChainRulesExt = "ChainRules" LuxComponentArraysExt = "ComponentArrays" - LuxDynamicExpressionsExt = "DynamicExpressions" - LuxEnzymeExt = "Enzyme" - LuxFluxExt = "Flux" - LuxMLUtilsExt = "MLUtils" - LuxMPIExt = "MPI" - LuxMPINCCLExt = ["CUDA", "MPI", "NCCL"] - LuxReverseDiffExt = ["FunctionWrappers", "ReverseDiff"] - LuxSimpleChainsExt = "SimpleChains" + LuxComponentArraysReverseDiffExt = ["ComponentArrays", "ReverseDiff"] + LuxFluxTransformExt = "Flux" + LuxLuxAMDGPUExt = "LuxAMDGPU" + LuxReverseDiffExt = "ReverseDiff" LuxTrackerExt = "Tracker" LuxZygoteExt = "Zygote" [deps.Lux.weakdeps] - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" - DynamicExpressions = "a40a106e-89c9-4ca8-8020-a735e8728b6b" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" - FunctionWrappers = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" - MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" - MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" - NCCL = "3fe64909-d7a1-4096-9b7d-7a0f12cf0f6b" + LuxAMDGPU = "83120cb1-ca15-4f04-bf3b-6967d2e6b60b" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SimpleChains = "de6bee2f-e2f4-4ec7-b6ed-219cc6f6e9e5" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.LuxCore]] deps = ["Compat", "DispatchDoctor", "Functors", "Random", "Setfield"] -git-tree-sha1 = "f1312b4295c21e8681f8661d9893fd3ba522d7c9" +git-tree-sha1 = "c3aeb50a8b894f9975e6b89c0ee67ccc6f256bb3" uuid = "bb33d45b-7691-41d6-9220-0943567d0623" -version = "0.1.23" -weakdeps = ["ChainRulesCore", "EnzymeCore", "MLDataDevices"] - - [deps.LuxCore.extensions] - LuxCoreChainRulesCoreExt = "ChainRulesCore" - LuxCoreEnzymeCoreExt = "EnzymeCore" - LuxCoreMLDataDevicesExt = "MLDataDevices" +version = "0.1.19" [[deps.LuxDeviceUtils]] -deps = ["Adapt", "ChainRulesCore", "Functors", "LuxCore", "Preferences", "Random", "UnrolledUtilities"] -git-tree-sha1 = "494db99a113c3a5a0b637d788a65494732f4558e" +deps = ["Adapt", "ChainRulesCore", "Functors", "LuxCore", "Preferences", "Random", "SparseArrays"] +git-tree-sha1 = "cffc2222bf9dc01730f6fc904266f8056abb8e83" uuid = "34f89e08-e1d5-43b4-8944-0b49ac560553" -version = "0.1.27" +version = "0.1.11" [deps.LuxDeviceUtils.extensions] - LuxDeviceUtilsAMDGPUExt = "AMDGPU" - LuxDeviceUtilsCUDAExt = "CUDA" LuxDeviceUtilsFillArraysExt = "FillArrays" - LuxDeviceUtilsGPUArraysExt = "GPUArrays" + LuxDeviceUtilsLuxAMDGPUExt = "LuxAMDGPU" LuxDeviceUtilsLuxCUDAExt = "LuxCUDA" - LuxDeviceUtilsMetalExt = ["GPUArrays", "Metal"] - LuxDeviceUtilsRecursiveArrayToolsExt = "RecursiveArrayTools" - LuxDeviceUtilsReverseDiffExt = "ReverseDiff" - LuxDeviceUtilsSparseArraysExt = "SparseArrays" - LuxDeviceUtilsTrackerExt = "Tracker" + LuxDeviceUtilsMetalExt = "Metal" LuxDeviceUtilsZygoteExt = "Zygote" - LuxDeviceUtilsoneAPIExt = ["GPUArrays", "oneAPI"] [deps.LuxDeviceUtils.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + LuxAMDGPU = "83120cb1-ca15-4f04-bf3b-6967d2e6b60b" LuxCUDA = "d0bbae9a-e099-4d5b-a835-1c6931763bda" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.LuxLib]] -deps = ["ArrayInterface", "ChainRulesCore", "Compat", "CpuId", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Hwloc", "KernelAbstractions", "LinearAlgebra", "LoopVectorization", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Octavian", "Polyester", "Random", "Reexport", "SLEEFPirates", "Static", "StaticArraysCore", "Statistics", "UnrolledUtilities"] -git-tree-sha1 = "f8a0c63f8b03718dcbf6f326b864f0d2189b1350" +deps = ["ChainRulesCore", "FastClosures", "KernelAbstractions", "LuxCore", "Markdown", "NNlib", "PrecompileTools", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "b1f81a8aa8313c1f1b4cbfb18733db17c023427e" uuid = "82251201-b29d-42c6-8e01-566dec8acb11" -version = "0.3.42" +version = "0.3.14" [deps.LuxLib.extensions] - LuxLibAppleAccelerateExt = "AppleAccelerate" - LuxLibBLISBLASExt = "BLISBLAS" - LuxLibCUDAExt = "CUDA" - LuxLibMKLExt = "MKL" + LuxLibForwardDiffExt = "ForwardDiff" LuxLibReverseDiffExt = "ReverseDiff" LuxLibTrackerAMDGPUExt = ["AMDGPU", "Tracker"] LuxLibTrackerExt = "Tracker" + LuxLibTrackercuDNNExt = ["CUDA", "Tracker", "cuDNN"] LuxLibcuDNNExt = ["CUDA", "cuDNN"] [deps.LuxLib.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - AppleAccelerate = "13e28ba4-7ad8-5781-acae-3021b1ed3924" - BLISBLAS = "6f275bd8-fec0-4d39-945b-7e95a765fa1e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - MKL = "33e6dc65-8f57-5167-99aa-e5a354878fb2" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" @@ -1854,40 +1710,6 @@ git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2024.2.0+0" -[[deps.MLDataDevices]] -deps = ["Adapt", "ChainRulesCore", "Functors", "Preferences", "Random", "UnrolledUtilities"] -git-tree-sha1 = "0999f1ff93d3bca8c8da74470b4c8758b3cedadf" -uuid = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" -version = "1.0.1" - - [deps.MLDataDevices.extensions] - MLDataDevicesAMDGPUExt = "AMDGPU" - MLDataDevicesCUDAExt = "CUDA" - MLDataDevicesFillArraysExt = "FillArrays" - MLDataDevicesGPUArraysExt = "GPUArrays" - MLDataDevicesMetalExt = ["GPUArrays", "Metal"] - MLDataDevicesRecursiveArrayToolsExt = "RecursiveArrayTools" - MLDataDevicesReverseDiffExt = "ReverseDiff" - MLDataDevicesSparseArraysExt = "SparseArrays" - MLDataDevicesTrackerExt = "Tracker" - MLDataDevicesZygoteExt = "Zygote" - MLDataDevicescuDNNExt = ["CUDA", "cuDNN"] - MLDataDevicesoneAPIExt = ["GPUArrays", "oneAPI"] - - [deps.MLDataDevices.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" - [[deps.MLDataPattern]] deps = ["LearnBase", "MLLabelUtils", "Random", "SparseArrays", "StatsBase"] git-tree-sha1 = "e99514e96e8b8129bb333c69e063a56ab6402b5b" @@ -1961,17 +1783,17 @@ version = "0.4.2" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" -[[deps.MatrixFactorizations]] -deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"] -git-tree-sha1 = "6731e0574fa5ee21c02733e397beb133df90de35" -uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87" -version = "2.2.0" +[[deps.MathOptInterface]] +deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] +git-tree-sha1 = "c0fe113e9c72aa0c9a185fd3c5ca1daa51de1486" +uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" +version = "1.31.1" -[[deps.MaybeInplace]] -deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "1b9e613f2ca3b6cdcbfe36381e17ca2b66d4b3a1" -uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" -version = "0.1.3" +[[deps.MathProgBase]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "9abbe463a1e9fc507f12a69e7f29346c2cdc472c" +uuid = "fdba3010-5040-5b88-9595-932c9decdf73" +version = "0.7.8" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] @@ -2043,6 +1865,12 @@ git-tree-sha1 = "816620e3aac93e5b5359e4fdaf23ca4525b00ddf" uuid = "6f286f6a-111f-5878-ab1e-185364afe411" version = "0.10.3" +[[deps.MutableArithmetics]] +deps = ["LinearAlgebra", "SparseArrays", "Test"] +git-tree-sha1 = "d0a6b1096b584a2b88efb70a92f8cb8c881eb38a" +uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" +version = "1.4.6" + [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" @@ -2050,16 +1878,10 @@ uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" version = "7.8.3" [[deps.NLopt]] -deps = ["NLopt_jll"] -git-tree-sha1 = "3b887e2ef56be3309e68d2546c6178e2d2fa9a60" +deps = ["MathOptInterface", "MathProgBase", "NLopt_jll"] +git-tree-sha1 = "5a7e32c569200a8a03c3d55d286254b0321cd262" uuid = "76087f3c-5699-56af-9a33-bf431cd00edd" -version = "1.0.2" - - [deps.NLopt.extensions] - NLoptMathOptInterfaceExt = ["MathOptInterface"] - - [deps.NLopt.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" +version = "0.6.5" [[deps.NLopt_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2127,36 +1949,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "bcd8812e751326ff1d4b2dd50764b93df51f143b" +deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "e10debcea868cd6e51249e8eeaf191c25f68a640" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.14.0" - - [deps.NonlinearSolve.extensions] - NonlinearSolveBandedMatricesExt = "BandedMatrices" - NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" - NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" - NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" - NonlinearSolveMINPACKExt = "MINPACK" - NonlinearSolveNLSolversExt = "NLSolvers" - NonlinearSolveNLsolveExt = "NLsolve" - NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" - NonlinearSolveSpeedMappingExt = "SpeedMapping" - NonlinearSolveSymbolicsExt = "Symbolics" - NonlinearSolveZygoteExt = "Zygote" - - [deps.NonlinearSolve.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" - FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" - LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" - MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" - NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" - NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" - SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" - SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +version = "1.10.1" [[deps.ObjectFile]] deps = ["Reexport", "StructIO"] @@ -2169,20 +1965,6 @@ git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" version = "0.5.5" -[[deps.Octavian]] -deps = ["CPUSummary", "IfElse", "LoopVectorization", "ManualMemory", "PolyesterWeave", "PrecompileTools", "Static", "StaticArrayInterface", "ThreadingUtilities", "VectorizationBase"] -git-tree-sha1 = "92410e147bdcaf9e2f982a7cc9b1341fc5dd1a77" -uuid = "6fd5a793-0b7e-452c-907f-f8bfe9c57db4" -version = "0.3.28" - - [deps.Octavian.extensions] - ForwardDiffExt = "ForwardDiff" - HyperDualNumbersExt = "HyperDualNumbers" - - [deps.Octavian.weakdeps] - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - HyperDualNumbers = "50ceba7f-c3ee-5a84-a6e8-3ad40456ec97" - [[deps.OffsetArrays]] git-tree-sha1 = "1a27764e945a152f7ca7efa04de513d473e9542e" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" @@ -2243,13 +2025,11 @@ deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89" uuid = "429524aa-4258-5aef-a3af-852621145aeb" version = "1.9.4" +weakdeps = ["MathOptInterface"] [deps.Optim.extensions] OptimMOIExt = "MathOptInterface" - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] git-tree-sha1 = "6572fe0c5b74431aaeb0b18a4aa5ef03c84678be" @@ -2257,18 +2037,12 @@ uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" version = "0.3.3" [[deps.Optimization]] -deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Pkg", "Printf", "ProgressLogging", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "81abd38353faaf0297a964fa6115a54c6a066cab" +deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"] +git-tree-sha1 = "1aa7ffea6e171167e9cae620d749e16d5874414a" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "3.26.3" - -[[deps.OptimizationBase]] -deps = ["ADTypes", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "Reexport", "Requires", "SciMLBase", "SparseArrays"] -git-tree-sha1 = "dcb1f85b0da580e2363c0197b0366406031a69cd" -uuid = "bca83a33-5cc9-4baa-983d-23429ab6bcbb" -version = "1.2.0" +version = "3.19.3" - [deps.OptimizationBase.extensions] + [deps.Optimization.extensions] OptimizationEnzymeExt = "Enzyme" OptimizationFiniteDiffExt = "FiniteDiff" OptimizationForwardDiffExt = "ForwardDiff" @@ -2278,7 +2052,7 @@ version = "1.2.0" OptimizationTrackerExt = "Tracker" OptimizationZygoteExt = "Zygote" - [deps.OptimizationBase.weakdeps] + [deps.Optimization.weakdeps] Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -2291,15 +2065,15 @@ version = "1.2.0" [[deps.OptimizationNLopt]] deps = ["NLopt", "Optimization", "Reexport"] -git-tree-sha1 = "83b7f5218c6ff83f65fff32923630fe8be9f5131" +git-tree-sha1 = "dc1b76eae7c47ae77560803587911d4d219af531" uuid = "4e6fcdb7-1186-4e1f-a706-475e75c168bb" -version = "0.2.2" +version = "0.1.8" [[deps.OptimizationOptimJL]] deps = ["Optim", "Optimization", "Reexport", "SparseArrays"] -git-tree-sha1 = "43870d726f883a47d158beebb1fc3c9fab1da9d6" +git-tree-sha1 = "bea24fb320d58cb639e3cbc63f8eedde6c667bd3" uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.3.2" +version = "0.1.14" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2313,10 +2087,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.3" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "a8b2d333cd90562b58b977b4033739360b37fb1f" +deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "f0f43037c0ba045e96f32d65858eb825a211b817" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.87.0" +version = "6.58.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -2331,9 +2105,9 @@ version = "0.11.31" [[deps.PSIS]] deps = ["LinearAlgebra", "LogExpFunctions", "Printf", "RecipesBase", "Statistics"] -git-tree-sha1 = "336b7fb8f3c767a934378b7edb2ca8687bee1515" +git-tree-sha1 = "72a16ef4d76e0cb071d704ff50dc086b6715d2f9" uuid = "ce719bf2-d5d0-4fb9-925d-10a81b42ad04" -version = "0.9.5" +version = "0.7.2" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -2359,16 +2133,17 @@ git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" version = "2.8.1" +[[deps.PartialFunctions]] +deps = ["MacroTools"] +git-tree-sha1 = "47b49a4dbc23b76682205c646252c0f9e1eb75af" +uuid = "570af359-4316-4cb7-8c74-252c00c2016b" +version = "1.2.0" + [[deps.Pathfinder]] -deps = ["Distributions", "Folds", "ForwardDiff", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"] -git-tree-sha1 = "3c3cf5686422e6255351fe9c20520d9f1001fadb" +deps = ["Accessors", "Distributions", "Folds", "ForwardDiff", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"] +git-tree-sha1 = "9276ab48cb3a900e0bca214912c756d52625dadb" uuid = "b1d3bc72-d0e7-4279-b92f-7fa5d6d2d454" -version = "0.8.8" -weakdeps = ["Accessors", "DynamicHMC", "DynamicPPL", "MCMCChains", "Turing"] - - [deps.Pathfinder.extensions] - PathfinderDynamicHMCExt = "DynamicHMC" - PathfinderTuringExt = ["Accessors", "DynamicPPL", "MCMCChains", "Turing"] +version = "0.7.0" [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" @@ -2485,6 +2260,10 @@ version = "2.3.2" deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +[[deps.Profile]] +deps = ["Printf"] +uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" + [[deps.ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" @@ -2598,28 +2377,20 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "b034171b93aebc81b3e1890a036d13a9c4a9e3e0" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.27.0" +version = "2.38.10" [deps.RecursiveArrayTools.extensions] - RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" - RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" - RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] - RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2722,29 +2493,20 @@ uuid = "26aad666-b158-4e64-9d35-0e672562fa48" version = "0.1.1" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "7f0e208db50f5fee2386b6d8dc9608d580059331" +deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] +git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.48.1" +version = "1.98.1" +weakdeps = ["Zygote"] [deps.SciMLBase.extensions] - SciMLBaseChainRulesCoreExt = "ChainRulesCore" - SciMLBaseMakieExt = "Makie" - SciMLBasePartialFunctionsExt = "PartialFunctions" - SciMLBasePyCallExt = "PyCall" - SciMLBasePythonCallExt = "PythonCall" - SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" - - [deps.SciMLBase.weakdeps] - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" - PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" - PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" - PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" - RCall = "6f49c342-dc21-5d91-9882-a32aef131414" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + ZygoteExt = "Zygote" + +[[deps.SciMLNLSolve]] +deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] +git-tree-sha1 = "765b788339abd7d983618c09cfc0192e2b6b15fd" +uuid = "e9a6253c-8580-4d32-9898-8661bb511710" +version = "0.1.9" [[deps.SciMLOperators]] deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "StaticArraysCore"] @@ -2754,16 +2516,10 @@ version = "0.3.9" weakdeps = ["SparseArrays"] [[deps.SciMLSensitivity]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SciMLStructures", "SparseDiffTools", "StaticArrays", "StaticArraysCore", "Statistics", "StochasticDiffEq", "SymbolicIndexingInterface", "Tracker", "TruncatedStacktraces", "Zygote"] -git-tree-sha1 = "0b677567d07f4447f79f6e12a01db5c4dc02e54f" +deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "EllipsisNotation", "Enzyme", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEq", "Parameters", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLOperators", "SparseDiffTools", "StaticArrays", "StaticArraysCore", "Statistics", "StochasticDiffEq", "Tracker", "TruncatedStacktraces", "Zygote"] +git-tree-sha1 = "3b0fde1944502bd736bcdc3d0df577dddb54d189" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.64.0" - -[[deps.SciMLStructures]] -deps = ["ArrayInterface"] -git-tree-sha1 = "20ad3e7c137156c50c93c888d0f2bc5b7883c729" -uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.4.2" +version = "7.51.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -2817,17 +2573,14 @@ uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.1.0" [[deps.SimpleNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "4d7a7c177bcb4c6dc465f09db91bfdb28c578919" +deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.12.0" -weakdeps = ["ChainRulesCore", "ReverseDiff", "Tracker", "Zygote"] +version = "0.1.23" +weakdeps = ["NNlib"] [deps.SimpleNonlinearSolve.extensions] - SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" - SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" - SimpleNonlinearSolveTrackerExt = "Tracker" - SimpleNonlinearSolveZygoteExt = "Zygote" + SimpleNonlinearSolveNNlibExt = "NNlib" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -2856,9 +2609,9 @@ version = "1.10.0" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "c9e5d7ee75cf6a1ca3a22c9a6a4ef451792cf62b" +git-tree-sha1 = "cce98ad7c896e52bb0eded174f02fc2a29c38477" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.20.0" +version = "2.18.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -2880,12 +2633,6 @@ git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" version = "0.1.2" -[[deps.SparseMatrixColorings]] -deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "ad048e784b816e4de5553a13f1daf148412f3dbd" -uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.6" - [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" @@ -2909,10 +2656,10 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] -git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603" +deps = ["IfElse"] +git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.1.1" +version = "0.8.10" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] @@ -2988,16 +2735,16 @@ uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" version = "0.15.7" [[deps.SteadyStateDiffEq]] -deps = ["ConcreteStructs", "DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "Reexport", "SciMLBase"] -git-tree-sha1 = "ea7119de1cdd294c9b0d8e8ce6a120711c7904c8" +deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport", "SciMLBase"] +git-tree-sha1 = "2ca69f4be3294e4cd987d83d6019037d420d9fc1" uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f" -version = "2.3.0" +version = "1.16.1" [[deps.StochasticDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "b47f8ccc5bd06d5f7a643bf6671365ab9d6595d9" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "b341540a647b39728b6d64eaeda82178e848f76e" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.67.0" +version = "6.62.0" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] @@ -3058,9 +2805,9 @@ version = "7.2.1+1" [[deps.Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "e15f5a73f0d14b9079b807a9d1dac13e4302e997" +git-tree-sha1 = "71dc65a2d7decdde5500299c9b04309e0138d1b4" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.24.0" +version = "4.20.1" [[deps.Sundials_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "SuiteSparse_jll", "libblastrampoline_jll"] @@ -3069,10 +2816,10 @@ uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" version = "5.2.2+0" [[deps.SymbolicIndexingInterface]] -deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "c9fce29fb41a10677e24f74421ebe31220b81ad0" +deps = ["DocStringExtensions"] +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.28" +version = "0.2.2" [[deps.TOML]] deps = ["Dates"] @@ -3222,10 +2969,10 @@ uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" version = "1.5.0" [[deps.Turing]] -deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "OrderedCollections", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "8b19dc437b1af6da764aa09c14db571f93fe7a30" +deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "a11ea6fcba56924d2dd151b3ec5a6dd553a3b65c" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.32.3" +version = "0.33.3" weakdeps = ["DynamicHMC", "Optim"] [deps.Turing.extensions] @@ -3272,11 +3019,6 @@ git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8" uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" version = "1.6.4" -[[deps.UnrolledUtilities]] -git-tree-sha1 = "b73f7a7c25a2618c5052c80ed32b07e471cc6cb0" -uuid = "0fe1646c-419e-43be-ac14-22321958931b" -version = "0.1.2" - [[deps.UnsafeAtomics]] git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" @@ -3284,9 +3026,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "4073c836c2befcb041e5fe306cb6abf621eb3140" +git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.2.0" +version = "0.1.5" [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" @@ -3330,24 +3072,16 @@ uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" version = "1.4.2" [[deps.WeightInitializers]] -deps = ["ArgCheck", "ChainRulesCore", "ConcreteStructs", "GPUArraysCore", "LinearAlgebra", "Random", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "33ce5777ca44b33f708ccbc67ea51b68a68b7bdd" +deps = ["ChainRulesCore", "LinearAlgebra", "PartialFunctions", "PrecompileTools", "Random", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "f0e6760ef9d22f043710289ddf29e4a4048c4822" uuid = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d" -version = "1.0.1" +version = "0.1.7" [deps.WeightInitializers.extensions] - WeightInitializersAMDGPUExt = ["AMDGPU", "GPUArrays"] - WeightInitializersCUDAExt = ["CUDA", "GPUArrays"] - WeightInitializersGPUArraysExt = "GPUArrays" - WeightInitializersMetalExt = ["Metal", "GPUArrays"] - WeightInitializersoneAPIExt = ["oneAPI", "GPUArrays"] + WeightInitializersCUDAExt = "CUDA" [deps.WeightInitializers.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] diff --git a/Project.toml b/Project.toml index fff43cebe..cdfa84dd5 100644 --- a/Project.toml +++ b/Project.toml @@ -52,4 +52,4 @@ UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [compat] -Turing = "0.32" +Turing = "0.33" diff --git a/_quarto.yml b/_quarto.yml index 66dc267c1..856afea87 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -32,7 +32,7 @@ website: text: Team right: # Current version - - text: "v0.31" + - text: "v0.33" menu: - text: Changelog href: https://turinglang.org/docs/changelog.html