Windows path issues

[woldmuyn]

Issue

• Python version: Python 3.10.6
• Operating System: Windows

Description

Path errors on Windows when executing woldmuyn_long_COVID.py
Due to code is executing from COVID19-Model folder

Fix

os.path.join(abs_dir,file_path)

• utils.py line 387

residence_time_distributions = pd.read_excel(os.path.join(abs_dir,'../../../data/covid19_DTM/interim/model_parameters/hospitals/',age_path,'sciensano_hospital_parameters.xlsx'), sheet_name='residence_times', index_col=0, header=[0,1])

• utils.py line 389

bootstrap_fractions = np.load(os.path.join(abs_dir,'../../../data/covid19_DTM/interim/model_parameters/hospitals/',age_path,'sciensano_bootstrap_fractions.npy'))

• model_parameters.py line 368

base_samples_dict = load_samples_dict(os.path.join(abs_dir,samples_path,base_dict_name), age_stratification_size=age_stratification_size)

Comment

Probably more similar issues in code