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Release/v3.4.0 #44

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ellendejong
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@ellendejong ellendejong commented Dec 30, 2024 •
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rernst and others added 30 commits December 15, 2023 15:59
@rernst
Refactor to support mount points
ce320b4
@ellendejong
Merge pull request #36 from UMCUGenetics/release/v3.3.0
116b1c4 
Release/v3.3.0 to dev
@ellendejong
renamed log_file_writer
39bf33d
@ellendejong
fix flake8
4fd6894
@ellendejong
rename branches in github workflows
d58452b
@ellendejong
Merge pull request #38 from UMCUGenetics/fix/github_workflow_actions_…
3668298 
…branch

Fix/GitHub workflow actions branch (to dev)
@ellendejong
split line date and run_folder
da4cbbc
@rernst
Merge branch 'development' into feature/glims
473cba4
@rernst
Fix action_if_file_missing
3a46ec1
@rernst
Some PR suggestions
4953db4
@rernst
Remove bgarray references
115ef5a
@rernst
Fix first tests
bd70581
@rernst
Last tests fix
a7aea46
@rernst
Catch OSError, BlockingIOError
8c3fefc
@rernst
Set set_up_test scope to class.
764fcd0
@rernst
Merge pull request #34 from UMCUGenetics/feature/glims
2bd8ac6 
Support multiple mount points
@ellendejong
Merge remote-tracking branch 'origin/development' into feature/fix_va…
855b0ec 
…riable
@ellendejong
flake8: > 127 chrs
65c013c
@fdekievit
resolved merge conflicts
53356b6
@fdekievit
Merge pull request #41 from UMCUGenetics/hotfix/3.3.1
3df7dde 
Hotfix/3.3.1
@ellendejong
add include/exclude to rsync command
0139915
@ellendejong
Add raw data rnaseq folder
408d967
@ellendejong
change rnaseq to transcriptomes, add required file 'workflow.done'.
1b1bb01
@ellendejong
ruff format
0134cc3
@ellendejong
Change include of RAW_data_RNAseq
76d3eb7
@ellendejong
add path location and use **
b1ad5b3
@ellendejong
Merge remote-tracking branch 'origin/development' into release/v3.4.0
e3d3f83
@ellendejong
Merge branch 'master' into development
fa8f1a0
@ellendejong
add quotes around pattern and whitespace before --include/exclude
3770229
@ellendejong
include main dir
9ca926b
@rernst rernst self-requested a review February 7, 2025 14:23
rernst
rernst approved these changes Feb 7, 2025
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All reviewed in previous pr's

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@rernst rernst rernst approved these changes

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3 participants
@ellendejong @rernst @fdekievit