Building in docker

Dockerfile

@@ -0,0 +1,37 @@
+# tagged version, not latest! 
+FROM rocker/geospatial:3.5.2 
+
+# install node and npm (see https://nodejs.org/en/download/package-manager/#debian-and-ubuntu-based-linux-distributions)
+RUN sudo apt-get install -y curl &&\
+  sudo apt-get install -y gnupg &&\
+  curl -sL https://deb.nodesource.com/setup_10.x | sudo -E bash - &&\
+  sudo apt-get update &&\
+  sudo apt-get install -y nodejs &&\
+  sudo apt-get install -y build-essential
+
+RUN sudo npm install -g\
+  webpack\
+  webpack-cli\
+  d3-geo-projection
+
+#bring in DOI root cert.  Remove this statement for non-USGS persons
+RUN /usr/bin/wget -O /usr/lib/ssl/certs/DOIRootCA.crt http://sslhelp.doi.net/docs/DOIRootCA2.cer && \
+	ln -sf /usr/lib/ssl/certs/DOIRootCA.crt /usr/lib/ssl/certs/`openssl x509 -hash -noout -in /usr/lib/ssl/certs/DOIRootCA.crt`.0 && \
+	echo "\\n\\nca-certificate = /usr/lib/ssl/certs/DOIRootCA.crt" >> /etc/wgetrc;
+
+RUN Rscript -e 'installed.packages()'
+#Note that version rocker images are already set up to use the MRAN mirror corresponding to the 
+#date of the R version, so package dates are already set (unless forcing another repo)
+RUN Rscript -e  'devtools::install_github("richfitz/remake")' && \
+    Rscript -e  'install.packages("grithub", repos = c(getOption("repos"), "https://owi.usgs.gov/R"))' && \
+    Rscript -e 	'devtools::install_github("USGS-VIZLAB/[email protected]")' 
+    #note that most common packages will already be installed as part of the geospatial image	
+RUN    install2.r --error \
+	sbtools \
+	geojsonio \
+	dataRetrieval\
+	bit64
+
+RUN mkdir /home/rstudio/gage-conditions
+RUN chown rstudio /home/rstudio/gage-conditions
+WORKDIR /home/rstudio/gage-conditions

Jenkinsfile

@@ -0,0 +1,35 @@
+pipeline {
+    agent none 
+    stages {
+        stage('Checkout repo') {
+            agent any 
+            steps {
+                sh 'wget -O DOIRootCA2.cer http://sslhelp.doi.net/docs/DOIRootCA2.cer'
+                git "https://github.com/wdwatkins/gage-conditions"
+            }
+        }
+        stage('build viz') {
+            agent {
+                dockerfile {
+                    args '-v ${WORKSPACE}:/home/rstudio/gage-conditions'
+                } 
+            }
+            steps {
+                sh 'mkdir -p target' 
+                sh '''
+                    Rscript -e 'vizlab::vizmake("dv_sites_sp")' 
+                    Rscript -e "remake::make(remake_file = 'map_preprocess.yml')"
+                    Rscript -e "vizlab::vizmake()"
+                   '''
+            }
+        }
+        stage('push to S3') {
+            agent any
+            steps { 
+                sh 'aws s3 sync ./target/ s3://dev-owi.usgs.gov/vizlab/water-use-15/ --exclude "*.svg" --exclude "*.json"; \
+                    aws s3 sync ./target/ s3://dev-owi.usgs.gov/vizlab/water-use-15/ --exclude "*" --include "*.svg" --content-type "image/svg+xml"; \
+                    aws s3 sync ./target/ s3://dev-owi.usgs.gov/vizlab/water-use-15/ --exclude "*" --include "*.json" --content-type "application/json"'
+            }
+        }
+    }
+}

docker-compose.yml

@@ -0,0 +1,18 @@
+version: "3"
+services:
+  docker-dev-mode:
+    image: gage-conditions
+    build:
+      context: .
+      dockerfile: Dockerfile
+    ports:
+      - "8787:8787"
+    volumes:
+       - gage-conditions-data:/home/rstudio/gage-conditions
+    environment:
+      - ROOT=TRUE
+      - PASSWORD=mypass
+
+volumes:
+  gage-conditions-data:
+

scripts/fetch/dv_data.R

@@ -12,7 +12,7 @@ fetch.dv_data <- function(viz){
   sites <- deps[["sites"]]
 
   startDate <- paste0(year, "-01-01")
-  endDate <- paste0(year, "-12-31")
+  endDate <- paste0(year, "-01-02")
 
   dv_sites_data <- lapply(sites, FUN = function(x){
     d <- renameNWISColumns(

scripts/fetch/dv_sites.R

@@ -12,7 +12,7 @@ fetch.dv_sites <- function(viz){
   year <- deps[["year"]][["year"]]
 
   startDate <- paste0(year, "-01-01")
-  endDate <- paste0(year, "-12-31")
+  endDate <- paste0(year, "-01-02")
   hucs <- zeroPad(1:21, 2)
 
   sites <- c()

viz.yaml

@@ -18,7 +18,7 @@ info:
       version: 0.9-7
     dataRetrieval:
       repo: CRAN
-      version: 2.7.4
+      version: 2.7.3
     dplyr:
       repo: CRAN
       version: 0.7.4
@@ -28,6 +28,12 @@ info:
     sp:
       repo: CRAN
       version: 1.2.7
+    sbtools:
+      repo: CRAN
+      version: 1.1.6
+    geojsonio:
+      repo: CRAN
+      version: 0.6.0
   contributors:
     -
       name: Lindsay Carr