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Use Pharmpy v1.4.0
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@rikardn
rikardn committed Dec 4, 2024
1 parent ae3e8cb commit b61e3e2
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion pharmpy
Submodule pharmpy updated 57 files
+1 −1 .bumpversion.cfg
+8 −2 .github/workflows/main.yml
+3 −0 .mailmap
+33 −0 CHANGELOG.rst
+1 −0 MANIFEST.in
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+3 −3 docs/amd_pkpd.rst
+1 −1 docs/conf.py
+1 −1 docs/getting_started.rst
+68 −3 docs/iivsearch.rst
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+12 −0 docs/modelfit.rst
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+10 −10 lint-requirements.txt
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+20 −20 requirements.txt
+4 −3 setup.py
+1 −1 src/pharmpy/__init__.py
+1 −0 src/pharmpy/cli.py
+14 −13 src/pharmpy/deps/altair.py
+3 −3 src/pharmpy/modeling/common.py
+31 −15 src/pharmpy/modeling/data.py
+2 −3 src/pharmpy/modeling/estimation_steps.py
+33 −23 src/pharmpy/modeling/tmdd.py
+3 −0 src/pharmpy/reporting/conf.py
+5 −0 src/pharmpy/reporting/reporting.py
+10 −0 src/pharmpy/tools/__init__.py
+148 −84 src/pharmpy/tools/amd/run.py
+79 −4 src/pharmpy/tools/context.py
+213 −105 src/pharmpy/tools/covsearch/tool.py
+1 −1 src/pharmpy/tools/estmethod/tool.py
+6 −3 src/pharmpy/tools/external/nonmem/run.py
+13 −2 src/pharmpy/tools/iivsearch/algorithms.py
+33 −40 src/pharmpy/tools/iivsearch/tool.py
+1 −1 src/pharmpy/tools/mfl/grammar.py
+37 −41 src/pharmpy/tools/mfl/parse.py
+2 −2 src/pharmpy/tools/mfl/statement/feature/direct_effect.py
+2 −2 src/pharmpy/tools/mfl/statement/feature/effect_comp.py
+1 −1 src/pharmpy/tools/modelsearch/tool.py
+6 −8 src/pharmpy/tools/retries/tool.py
+54 −21 src/pharmpy/tools/run.py
+1 −1 src/pharmpy/tools/vpc/psn_vpc.py
+1 −1 src/pharmpy/tools/wrap.py
+5 −0 src/pharmpy/workflows/contexts/baseclass.py
+1 −1 src/pharmpy/workflows/contexts/local_directory.py
+3 −3 test-requirements.txt
+16 −0 tests/integration/test_iivsearch.py
+1 −1 tests/integration/test_structsearch.py
+3 −3 tests/tools/conftest.py
+51 −7 tests/tools/test_amd.py
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+1 −1 tests/tools/test_estmethod.py
+45 −0 tests/tools/test_iivsearch.py
+43 −0 tests/tools/test_mfl.py
+9 −11 tests/tools/test_run.py
+5 −1 tests/tools/test_structsearch.py

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