Merge pull request #183 from UUPharmacometrics/dev

Update master to 0.4.10
UUPharmacometrics · Jun 7, 2020 · 4ec50de · 4ec50de
2 parents 64231e3 + 98d3399
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: xpose
 Type: Package
 Title: Diagnostics for Pharmacometric Models
-Version: 0.4.9
+Version: 0.4.10
 Authors@R: c(
       person('Benjamin', 'Guiastrennec',
              role  = c('aut', 'cre', 'cph'),
@@ -19,7 +19,7 @@ Authors@R: c(
              role  = c('aut', 'cph'),
              email = '[email protected]'))
 Description: Diagnostics for non-linear mixed-effects (population) 
-    models from 'NONMEM' <http://www.iconplc.com/innovation/nonmem/>. 
+    models from 'NONMEM' <https://www.iconplc.com/innovation/nonmem/>. 
     'xpose' facilitates data import, creation of numerical run summary 
     and provide 'ggplot2'-based graphics for data exploration and model 
     diagnostics.

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,6 @@
+# xpose 0.4.10
+* Compatibility fix for vpc 1.3.0
+
 # xpose 0.4.9
 * Compatibility fix for dplyr 1.0.0 and vpc 1.2.0
 

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/about.html b/docs/articles/about.html
diff --git a/docs/articles/about_files/header-attrs-2.2/header-attrs.js b/docs/articles/about_files/header-attrs-2.2/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/access_xpdb_data.html b/docs/articles/access_xpdb_data.html
diff --git a/docs/articles/access_xpdb_data_files/header-attrs-2.2/header-attrs.js b/docs/articles/access_xpdb_data_files/header-attrs-2.2/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/customize_plots.html b/docs/articles/customize_plots.html
diff --git a/docs/articles/customize_plots_files/header-attrs-2.2/header-attrs.js b/docs/articles/customize_plots_files/header-attrs-2.2/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/faq.html b/docs/articles/faq.html
diff --git a/docs/articles/faq_files/header-attrs-2.2/header-attrs.js b/docs/articles/faq_files/header-attrs-2.2/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/import_model_outputs.html b/docs/articles/import_model_outputs.html
diff --git a/docs/articles/import_model_outputs_files/header-attrs-2.2/header-attrs.js b/docs/articles/import_model_outputs_files/header-attrs-2.2/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/interactive_plots.html b/docs/articles/interactive_plots.html
diff --git a/docs/articles/interactive_plots_files/header-attrs-2.2/header-attrs.js b/docs/articles/interactive_plots_files/header-attrs-2.2/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/introduction.html b/docs/articles/introduction.html
diff --git a/docs/articles/introduction_files/header-attrs-2.2/header-attrs.js b/docs/articles/introduction_files/header-attrs-2.2/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/multiple_pages.html b/docs/articles/multiple_pages.html
diff --git a/docs/articles/multiple_pages_files/header-attrs-2.2/header-attrs.js b/docs/articles/multiple_pages_files/header-attrs-2.2/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/docs/articles/plot_list.html b/docs/articles/plot_list.html
diff --git a/docs/articles/plot_list_files/header-attrs-2.2/header-attrs.js b/docs/articles/plot_list_files/header-attrs-2.2/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});